CcUC06G111570.1 (mRNA) Watermelon (PI 537277) v1

Overview
NameCcUC06G111570.1
TypemRNA
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr06: 2313973 .. 2318447 (+)
Sequence length1017
RNA-Seq ExpressionCcUC06G111570.1
SyntenyCcUC06G111570.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATACCGCTGTAGAGCACCAGCAGCGACTATACGATTCACCTTATTGTCATCTATTACCAGAATTTTTCGACCAAGAAGTAAACTACGGAGTGAGAGAACGGGAAGCTCTCCGTTGCGAGGATTAACCTTGATCCCCACACCCATGACTCGGTGTAGAGAGGCAGCGAGCATGCCTGCCCTCAAGGGCTTTAAGATGACAGTGGGAGTGAATGCATCAGAAATTATAGTGCTAGTTTTTGAAGAACTAATGGAGCTAGTAAGAAGAAACAGTTTGGGAGGAACCGCATAAGAATTTCTCAAGTTTTTGATAAAATGATCTGATGCGCTCGTATCCTGATCCCAAAGTTTCTGCTCAACAAAAATCATATTGATAGTCGAACCACTAATAGTCGTGGTAGACAGACATTGATTCAAGTCAGATAAGACTTCGACATTTATTCCAAGTCGTTGGATATGATATCTTGATACTTTGGCTCGAATAGGTTGATGGTCCACAACTAATGCTCTCATACCCTTAAATTCTGAGGTTGCAGTGATGGAAGTGTTCTTAATTTGTTGGGTTTTGTTATACTCACTCGAATTGGGAGATCCGTTTGTGAAAACCGCAGTGAATGTGAAGGTAGAGCCAATCTTAGGTACACTCACAAAACCAATTTCCCCCTTCATGAGGCCAACCAAACATTTGCTAATACTCAGCCCGATACCTGTTCCCCCATGAGTTCTAGAGATGGATGGTCGAACCTGCATGAAGGGAGTGAAAATGCGTGATTGGGCTTCTAGAGGAATACCAACACCCGTATCTTCCACGGATACCATGAGGTTAATAAGGTCTGGTGGAGATGGCATGAAATGACAAGCAGTGGGTCCCTCTTGACTGAATGTTCGAAATCCTGCCCAGCTGAGACGTCTATTCGCAATAGGATAGCCACTCAAGGTGCTATTTGTTGATGACTCGATCTCTAGGTCAATTGATTCAATAACCTCCTTGACGAGATTAACAGTGACAAATATGTGCCCTTTCTCTGTGAACTGCAAAATCCAAACACGCCATCTTAGCAGCTAAAAAAAAAAAAATTAGTTGTCAAATGCAATGGATTCAAGTTTCTATCAAAGAGATCATTCACTCATTTTAAGATATTTCACCATTCCATTTGTGTGCCTACACCATAATTCACAACATCAGAAGAATTTGAATGGTTACCACCCCATTTAGTACTCATTTAGATCATTTGTTCTTAATTTCCGTACGTATACATGAAAGAAACACACAATTTCAAGATAACATGGGGCATCGATCGGTGAATGTAACTGCATGCAAATCCTCATCCTTGATCATCAGAAAATCCTGTGTACGATTCCTCCCCAACCTCAGTTATCCTATTAGTTTATTTGGCAATACAGAAGAAAGCCTTGCCTTGATTGAGTTTCCCACAAGATTAGTGATGATTTGCCTAAACCTTCCAGGATCACCAATAAGCGTCTCGGGAACACTATCTGAAATGTAAACTGCCAGCTGCAATGACAACAAAATGACAAGCAAATATAAATGAGTAATAAGAACAAGACACATAGAGATGAGGTAACAGAAAAGTAAGCATGGAGGATGGTGAAGACTACAGAATTTGAAGCGTATATTACCTCCAGTCCTTTTTCTTGAGATTTCCCAGAGAAGAGTGATAAAATATCATCCAAAATTGCTCGCAGATTGAAAGGTATAGCTTCAAGCTCAAGCTTTCCAGATTCAATTTTTGCCTGATCCAAAACCTCGTTTATCAATGATACCAAAGCTTTTCCACTGTCTTGTGCAGTTTTAACGTAATCTTGTTGAGTCACATCTAAGTCAGTGTCCATAAGCAAATGCAACATTCCTGAAATATCCAAAGAAATAGGTCAGATTATTACTGCAACAGAGTATAATTTGAAGAATTTCTTAGAAAGAACTAAAGCAAAAGAGACATCGGTAAATCCTCACCTAGAACACCATTCATTGGGGTTCTAATCTCATGGGAAACAGTTGCAAGGAACTACAAAGGGATAAAGAACTCTTGAGGCTCAATTCATAGACGAATATTGAGAAGAGATAATTATAATCTTTGACTAATCAATGTCCACATACCTGGGATTTGGCAATATCAGCATCTTCTGCCCGTTTCTTGAGTACCATCATCTCATGATAATCATCCTCCACTTTGGCAATTCGGTTCAACGTTGCATGGAATATATAACCCACAAGCAATGCAATAATGAGTATGCCAATTGAAGTTGTCATTGCCAGCCATGGCCAAGGTTGTTTTTGCTTGAATCTGTGTCAGAAACATAACATTCACCATTCGGGGAATACATACTTGTCCAATATCTCAACGATTAAAATAAGCCAGATTTAGATCCCATTAAAGAGAAGAATAGTAGGGTCTTTGAATAGATGGGAAGTTCCACAAAAGAAGGAGAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATAAAGGAGGGATCACTTCAATAAAAACAATATTCTTGAAAAACATTGACATTGAGTAGAACAAACCAAGTTGAAGAGGATGCATCAAAATGGAACTATTTTTGGAGTGATTCATTTTGTTACCTGCATTGCATCTCATGCTTCCTATCAGGATCCCCAAAGTTAAGGGGGCTAACATGCTGCAACCCATCAACTGATACATCTTTACCATACATACTGATTGGATGTGATTGGTTAGTGGTATCATAAACATTCACTAGGATGGTTTGGTTGCTTGCAAGCTGTTGAAGTAACTTCTCCACCAGAGACTCGATATCAAAAACTCCGCCAAGATACCTGTTTGACAAATATAGATGCATTGGTTATTGAATTGGCAGCTTAAAATACTTCTCTTTGCAACCCATGAATTTCCACCAAATAACAGACACTATCCATTAAATTGTAAGAGTGATTATACTATACGCATCCTTCAATGATTGGTTTAACGTTTAAGTTTGGTTCAGATTTCATAAGATAAATTGCATTATTTCACTAGAGGGTACACGACCAAGAACTAGGCATATCGACTTTGATTATCAGAAGGAAGACATACCCATCTGTAGCTTGAATCCTCTCATTTGGAGTGGCATTTGAGGGAAGATCTCTTTTGTAGACTGCAAATGTAAGTATGACCCCTAGACGATTTGTTTTGATTAACCTGAATGGAGCAGTTAAGACTCCCTTTCCTGATGATCTAGCACGTAATACATTCTTACGGTCTTCCTGGTTATGCGAATAATTCAGTATTAAATTTTATGCTTGGCATACAGAAATGATATAATAATTAGTATGACATCACATGTTAGAAGCACAAAACTTTTCAGGCAGGGAATTCTGAAAATTGTACAAGTCTTATCAAAACCAGGGCCATGTGACCACCAATCTCAACTAGAAGTATGAGTATCCAAGAAAACGATTGAATTGAGAAGATTATTTGTCTACAAATGTCCACTTTGGTCCAGCACAAGATAATTGGAATCTCACTGACATGAAAAGGTTCCAAAAGATAAGAAAGGATCTCACCACTCCCGACAGCATATCGAGAGAAACGACATGAGAAATTGTGTCCTGTGCGAAGATTACAGGAGCATATTCGTCTTGGGTGGGTGATGGCTCCAGATCTTCTGGAGCATAGTCATCTTCGTGAACCGGACTTTGTTCGATTTTGTCCATCCTTTTAATTGTCCAGCCCTGTTGCTTCTCAAAATGTTCTCTTTCGGAATGGAGCACCCTTACTGCATATGCCACACCACTGGTAAGAGGCCTCTCAAAAGCAGTTCTTTCCGTGTACCTCGCAAACGTCCTCTACATGTCTTAAAGTTAGTCTTTGTTGAATAGATAATAGAAATCATACTTCAAAAGAATACAATTTGGTTCTATGAAAAAAAAAAAACACTTGAAAATGAAAGCCGAGGTGTTTTAATCCAAAAGAGAAAATAGATAATTTCAAAACTTTATTCATAATACACTGATGCCTCATGAGTAGCAAGTTCTGGTCTAACTTTAGATTTCAATGCTTATATTGTTAACATCATACATCATAACCAAACCTTGTATGGATGCAAATAAGGATTATCAATAGAACATGCTTGAATCTTTCTTCCCCCACCCCTCCTCCATGTTTAGGGGATGGGAACGGAGAGATAGAGAGAAGGAAGGAGATGAAAGAAAAAAATAAAATTGTACCTGATCTATAGCAGATGGGTTTTTGCCATGATGGAAGGTGGAGATGAGGATGGACATTGCCTGAATATGATTCATACTGACATTAAACTGATCTTGAAGCATTCTAGCCCTTTCATCACACATGCTTCCCAAGGCTTCTTTCCTCTTCTCTGTAGCTTGGGAGCTCATGTAATGGAAGATCCATACCGAAGCAAGAGTAGAGCTAAAAACCCAAGCCACCAAAAGCCTTCTCCACCATGTTTTTCCAACTTTCTTGGATCCAATATA

mRNA sequence

CCATACCGCTGTAGAGCACCAGCAGCGACTATACGATTCACCTTATTGTCATCTATTACCAGAATTTTTCGACCAAGAAGTAAACTACGGAGTGAGAGAACGGGAAGCTCTCCGTTGCGAGGATTAACCTTGATCCCCACACCCATGACTCGGTGTAGAGAGGCAGCGAGCATGCCTGCCCTCAAGGGCTTTAAGATGACAGTGGGAGTGAATGCATCAGAAATTATAGTGCTAGTTTTTGAAGAACTAATGGAGCTAAGGAATACCAACACCCGTATCTTCCACGGATACCATGAGGTTAATAAGGTCTGGTGGAGATGGCATGAAATGACAAGCAGTGGGTCCCTCTTGACTGAATGTTCGAAATCCTGCCCAGCTGAGACGTCTATTCGCAATAGGATAGCCACTCAAGTGTCCATAAGCAAATGCAACATTCCTGAAATATCCAAAGAAATAGGTCAGATTATTACTGCAACAGAGTATAATTTGAAGAATTTCTTAGAAAGAACTAAAGCAAAAGAGACATCGGTTCCAAAAGATAAGAAAGGATCTCACCACTCCCGACAGCATATCGAGAGAAACGACATGAGAAATTGTGTCCTGTGCGAAGATTACAGGAGCATATTCGTCTTGGCCCTGTTGCTTCTCAAAATGTTCTCTTTCGGAATGGAGCACCCTTACTGCATATGCCACACCACTGGTAAGAGGCCTCTCAAAAGCAGTTCTTTCCGTGTACCTCGCAAACGTCCTCTACATGTCTTAAAATGGGTTTTTGCCATGATGGAAGGTGGAGATGAGGATGGACATTGCCTGAATATGATTCATACTGACATTAAACTGATCTTGAAGCATTCTAGCCCTTTCATCACACATGCTTCCCAAGGCTTCTTTCCTCTTCTCTGTAGCTTGGGAGCTCATGTAATGGAAGATCCATACCGAAGCAAGAGTAGAGCTAAAAACCCAAGCCACCAAAAGCCTTCTCCACCATGTTTTTCCAACTTTCTTGGATCCAATATA

Coding sequence (CDS)

CCATACCGCTGTAGAGCACCAGCAGCGACTATACGATTCACCTTATTGTCATCTATTACCAGAATTTTTCGACCAAGAAGTAAACTACGGAGTGAGAGAACGGGAAGCTCTCCGTTGCGAGGATTAACCTTGATCCCCACACCCATGACTCGGTGTAGAGAGGCAGCGAGCATGCCTGCCCTCAAGGGCTTTAAGATGACAGTGGGAGTGAATGCATCAGAAATTATAGTGCTAGTTTTTGAAGAACTAATGGAGCTAAGGAATACCAACACCCGTATCTTCCACGGATACCATGAGGTTAATAAGGTCTGGTGGAGATGGCATGAAATGACAAGCAGTGGGTCCCTCTTGACTGAATGTTCGAAATCCTGCCCAGCTGAGACGTCTATTCGCAATAGGATAGCCACTCAAGTGTCCATAAGCAAATGCAACATTCCTGAAATATCCAAAGAAATAGGTCAGATTATTACTGCAACAGAGTATAATTTGAAGAATTTCTTAGAAAGAACTAAAGCAAAAGAGACATCGGTTCCAAAAGATAAGAAAGGATCTCACCACTCCCGACAGCATATCGAGAGAAACGACATGAGAAATTGTGTCCTGTGCGAAGATTACAGGAGCATATTCGTCTTGGCCCTGTTGCTTCTCAAAATGTTCTCTTTCGGAATGGAGCACCCTTACTGCATATGCCACACCACTGGTAAGAGGCCTCTCAAAAGCAGTTCTTTCCGTGTACCTCGCAAACGTCCTCTACATGTCTTAAAATGGGTTTTTGCCATGATGGAAGGTGGAGATGAGGATGGACATTGCCTGAATATGATTCATACTGACATTAAACTGATCTTGAAGCATTCTAGCCCTTTCATCACACATGCTTCCCAAGGCTTCTTTCCTCTTCTCTGTAGCTTGGGAGCTCATGTAATGGAAGATCCATACCGAAGCAAGAGTAGAGCTAAAAACCCAAGCCACCAAAAGCCTTCTCCACCATGTTTTTCCAACTTTCTTGGATCCAATATA

Protein sequence

PYRCRAPAATIRFTLLSSITRIFRPRSKLRSERTGSSPLRGLTLIPTPMTRCREAASMPALKGFKMTVGVNASEIIVLVFEELMELRNTNTRIFHGYHEVNKVWWRWHEMTSSGSLLTECSKSCPAETSIRNRIATQVSISKCNIPEISKEIGQIITATEYNLKNFLERTKAKETSVPKDKKGSHHSRQHIERNDMRNCVLCEDYRSIFVLALLLLKMFSFGMEHPYCICHTTGKRPLKSSSFRVPRKRPLHVLKWVFAMMEGGDEDGHCLNMIHTDIKLILKHSSPFITHASQGFFPLLCSLGAHVMEDPYRSKSRAKNPSHQKPSPPCFSNFLGSNI
Homology
[Close]
BLAST of CcUC06G111570.1 vs. NCBI nr
Match: CBI20858.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 59.7 bits (143), Expect = 5.7e-05
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 0 

Query: 1   PYRCRAPAATIRFTLLSSITRIFRPRSKLRSERTGSSPLRGLTLIPTPMTRCR 54
           PY   APAAT+RFTLLSS TRIF PR +LR ++ G SP     L PTP  R R
Sbjct: 76  PYFFNAPAATLRFTLLSSTTRIFLPRRRLRRDKLGCSPFWQTPLFPTPRARSR 128

The following BLAST results are available for this feature:
BLAST of CcUC06G111570.1 vs. NCBI nr
Match NameE-valueIdentityDescription
CBI20858.35.7e-0558.49unnamed protein product, partial [Vitis vinifera][more]
BLAST of CcUC06G111570.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC06G111570.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC06G111570.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 313..339
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 321..339

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CcUC06G111570CcUC06G111570gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC06G111570.1-exonCcUC06G111570.1-exon-CicolChr06:2313973..2314230exon
CcUC06G111570.1-exonCcUC06G111570.1-exon-CicolChr06:2314755..2314908exon
CcUC06G111570.1-exonCcUC06G111570.1-exon-CicolChr06:2315819..2315934exon
CcUC06G111570.1-exonCcUC06G111570.1-exon-CicolChr06:2317491..2317596exon
CcUC06G111570.1-exonCcUC06G111570.1-exon-CicolChr06:2317684..2317813exon
CcUC06G111570.1-exonCcUC06G111570.1-exon-CicolChr06:2318195..2318447exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC06G111570.1-cdsCcUC06G111570.1-cds-CicolChr06:2313973..2314230CDS
CcUC06G111570.1-cdsCcUC06G111570.1-cds-CicolChr06:2314755..2314908CDS
CcUC06G111570.1-cdsCcUC06G111570.1-cds-CicolChr06:2315819..2315934CDS
CcUC06G111570.1-cdsCcUC06G111570.1-cds-CicolChr06:2317491..2317596CDS
CcUC06G111570.1-cdsCcUC06G111570.1-cds-CicolChr06:2317684..2317813CDS
CcUC06G111570.1-cdsCcUC06G111570.1-cds-CicolChr06:2318195..2318447CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CcUC06G111570.1CcUC06G111570.1-proteinpolypeptide