CcUC05G095840.1 (mRNA) Watermelon (PI 537277) v1

Overview
NameCcUC05G095840.1
TypemRNA
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionDNA double-strand break repair rad50 ATPase
LocationCicolChr05: 19453562 .. 19459288 (+)
Sequence length1700
RNA-Seq ExpressionCcUC05G095840.1
SyntenyCcUC05G095840.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAATCACAGTTCCTTGAAAGCCCATTATTTCGATCACGTCATCTTCAATCAGCCTCGCGAACAACAATTGAAGCAGGTCAGCATTTGCATTCGAAACACCAGTAACCACCCGGCGTCCGGAAGCTCGGATTGAACTCAACTGAAGGCTGAAGGATTCAAATACATGGCTTTAACGAACTTCATCTTGACGGTGGCCGGAGTTAGCGCCGTGGTTCTTCTTTTGAGGAGCGATGTGAAGCAATCAGCCTCAATCTTCAGGCGCAACGTCAAGCACATCCGCCAGTGGCTTGAAGAAGAATCTGCCTCTGCCTCCAAGTAATTTCTCTTTGCTCTTGGTTCTCTTTGCTTGTTTGTTCGTATTTTTCTTTTAAAGTTTTTGTGTATTTGTGCTATCGGAAATGAATCAGTAGACCATAGCAATTGATTCGATTATGTGCCCTGGGAATCTAATGCGCAGGCCATGGTAGTATTCATGTCTTTATATATATAATTTCTCAGTTTGGGGTTGCAATTGCGTAATAGTGCTCGGTGTATTGTTGGTTAACCAGAAGAAAACCTGTTTTGAATTCACTTTGGGTATAGCCATGTGGATGTTTGAATAAATCTGAACTTTCTGGGATTTATGTGGAAAGAGAGAGAATCACTATGACGGCTGATTGTTTGGTTGGTCAGCGAGTGGCCAATAAAATATTTGGGGCATGCTTTAGCGGAAATCAAAGAGAGAGGCTATTTGGAGACCCATCCAGGATAAAAAGATATTGGGGACATTAGAGTCCAACTTCGGTTCACCAGATTTTTCACATTTACGCTTTCATATTGTATATATTTATGGTCCGCATGCCTAATAAATTAGCTGGTTGAATAAACAGATTACGAATATACAAGAGAATTATTTGGGGATGGAAAGAATGAAGGAAAAATTAAATCATTTGCTGATGTGAGATATAACATTTTATCTTTGGTGTTGGGGAGGGGGTGAGAGAGAGAGAGAGAAATGAAGTTCTCCTGGCTCAAGGTTTCTCTAGAGGTTGAGGATTTGTAGGATTAAATTATTAAAGGAAAAACTGGTTTTTATTGGATGAGGGTACAAAGGTGAAGAGAAATAGTTGCTGGTAGAACATCTCCACGTTTAGACTTGTGGCCTAACAATTTTTAGTGGGAACGATACGAGGATTTCCTTTTGTGACAATAGATGGGAGAGAATCAGTTGATAAGGTGTATGTTTTGGAGTAGTTATTTTTCATTAAAAAAAGGTGTATGTTTTGGAGTATTTCAAATGTGACAGCTCTGTCAGATAAATTCATTGACTGTGAAGGATTTCTGAATGAGAAGTAAATTCCTCGAAAATTTCTATGAGATGATATTTTTCAGAAGAAGAAAGCATGTATGATGGCGTTGCTAGAAAAGACCTAGGAACAAGGAGGATATTTATGTATGACTCTAGAATCATCTGGATGTTCCTCAACTAGTCACGTTACAGAATACGTAAGAAAAAGAGGAGGTTTTAAAGAGAAATCCATTACGGTCAGTTTGAAATGGAAAAATCCCACAGAAGATTAAAGTTTTCTTTATGGACTTCGCGGTTTTGAAGCCATGAAAATCACCGGAATTACAGAAAAGGTGTTCTGATAGGGCATTTCCCTTCCCCCAAACTGGTGTCCGCTTTGTAGAGCCAAGTAGAACCAACCACATGTTTTGTTTCACTCTGATAAGCTCCACGTTTTGGAGCACAAACTTGGGATCTACAAATAACCAGATATTTCTTAATTTGTTAAAAGTCTTGGAGTAAATGCTGTGAGTAGTCAATTTAAAGACGCAGATGAAGAATTCTCTGCCTAACTTAATTATATTGATGCTGTGGTAGTCATGGTTGGATCAATAATAAAGAGAGAAATAGGGAGAGTATAAACATTTCATGAGTAAAGCTCTGGGTCATGATAAGGGGTGAGATATAGTTGCTTCTTTTACTCAAAACCTTGGTAAGAGGTTGTTTAAGTGGAGATCATGAAAGATGGAGAATATCATAGCAATATGGATAATGAAGGAAATGTTTTCATTTTCCTAACACCTGTTAGTCATGTGCTTACGGGGTGAGTATTGGCAAGAAGGCAAAGGGAAAAGAGAGTAAAGATATAGTTGAAAAATGAAAGTTACAGTTCCTTAATTTAGTGGCACCTTTTTGCATTTCAAAGATTTCCTTGCCGTCAGTTCTCTTGAGAAACTCCTTATAAATTAATCAGTCATAGTTTTGGAGTAGGCTTGCCGTGCAAAGAGAAGAGCTAGAGAATCTAATTCTTGTCCAAGGGTTTCTAAAACGTTACTTGTCTTTTAGAATTCAAAGAAAAGCCGCATTTAGTCTTGGAAGGCTAAAAAACTGATAGAGAAAGGGACTTGATTGATTGATTGACTGGCTAGGTCTACCATTGTTCTAATGTTATTATTTTATACCAATTTTCCACTTCATAGTTTTCATGGGATATATTTCTCTTGAATCTTAATCAAGTCTAGCATAAAAGGGGATGCCAAATTGATTCCTGGAATATGCTTTTGGTGTAGACTAATTTGTTATGTTGAAGTTCGTGTTCAATTCGTTGCTAGATGCCAATTTATTTTTGTCTCATATGACAATACAAAGTAAAGGACTTGAGAATAAAGTAATAGTGAAACTCCAATGCCAAAGTCTAAATGGAAATGTAACTTTTACTGTATCAGTTTATTGCTATTTGATGAAAATTACAGGCTACTTACACTTTCAAGAGTTTTGGAATCCTCCTCTTGTAGTGCTCACTCTAGTCAGTTCCATCTAACTAGTTGGCTGCCCTCACTCCTCTCAGTTGTCCTTTCTATTGTCTATACTATTATAAAATATCCTGATAGTCCCTAACCCCTACATGAAACTAACTTTCGTTTAAAAGTTAAAAGTTTTCGAGGTGTTTGGAGACTAGCGAGTTTTTTCCTAGATTATTTCTGGTCTGATTCGTGGTTGTGTTAGGAGACCCCCTTTAAGGTATGTTTTCCTAGATTATTTTGCATTGCTTCACTAACTAATGGTAGCATTAATGATCATTGGGATTCAGCCACTAGCTCTTGGACTTTAATCTTCCGAAGACAGCTAAAAGAGGAGGAAATAGCAGATTTCCAGCAGCTTCTGAGTTATCTAGGAAGCAGCAGAATTTCTCATACTTCAGATGCCCGGATATGGTCTTTGGACGCTTCAGGAAGACATTTAGTAAAATCTTTGTCAAAATACTTAAATTCCTCCTCTCCTTTGGACAAAGAAGTTTACTGGGGTCTTTGGAAATCCAAAAGTCCCAAAAGAATAAATGTGTTGATTTGGATTTTGTTTTTTGGGACACTAAATTGTTCAGCCACTCTACAAAAGAAACTCATAAATCAAAGTTTATATCTTCTATTTGCCCGTTGTGTCAAGTTAAGGATGAAGATTTACAGCATTTACTGTTTGATTGCTTCTATTCAAGCAAGTGTTGGTGGAAATTGTTCTCCTTCTTCAACTTATCTTGGGTTTTTGGGCAGTCAATCCGAGAAAACATGACCCAAATTCTGGTTGGACCGCGGCTGTTATCTAAAGCACAAATTTTGTGGCATAATGTAGTCAAGGCTTTAGTTTCTGAGATTTGGTTTGAAAGAAATGAGCAAGTTTTTCATGATAAGCCTTCAAATTGGTCAGATCAGCTTGGATCTACTCGTTTACTAGCATCTTCATGGAGTTCCTAGTCAAAGTTCTTTGAAAATTACTTTATTCAGGACATGTCTTGACTAGAATGCACTTATTCTCTATGTAATCATGTTACTAAGTTATCTTAACAGATTTCTTTGCAAACGGATATGATGAGGGTGCTAAAGATGTGTCAACCTAGTTGAGATATCTGGATGCATCTCTTGATCCTTAGTTTCTATATTCTTGTAATTTTGTTTCACTATATCCTGAGCATTAGTCTCTTTTCGTTTCATCAATGAAAAGTTATATTTCTGTTTAAAAAAAATAATAATAATAAATAAATAAATTAAAAGTTCTCTTTCTTGGGAATACTTCACCGACTGGGAAGTCGGGCTCCTATTGGCATATTTCCTTAGCCTCTAGCCTCTAGAATCTCATATCTATTTCCTTGTTTTTTTAATTATTATTATTATTATTATTATTTTAATGGTATTAGATCCAATAGCACAATATTAGCAAGTTTAATGTAGTGTAGTTATGTTTGGCCAGAAGAATATTTGAGTTGGTGAGTGAAGAATATGACAGATGCATAAATAGAAAGTAATATAAGAAGAAAAGATGTCAAGCTTATGGGTTATGGCGATTTCATAGAACCCGAGTCTTTAAGTTCTCCATTTTGGCATGTGAATGCAACAGGCTGGTGCTCCTTTTGTAGGCCATACTTTTGTAATGTAAATACGATTGTGATGTTGTTCTTTCAGGACTGTGGAGAAAACAACCAAGGAGCTGGAAGCCAAGACTTCTCATAAAGATATTCCCAAAGACGACAAGCACTAACATATTGGTCGTTTAGCAATGTAAACCTTTTATTGATTCAATTTCTCCCCACCCACCCAAATTTTGCTGTCCACTTCACTACAAAAAATATCTTTTACTTTCCAGTGTTCCTTTTCATCCAAGTTTAGTATTTGATGAAAAATGACATGCTTTTTCATTACATAGAAAGCCTAGTCTGTTAAACAAGATACCCTTTAGATCCTTTCATTTTCTAATGGAAGAGTATTGTTTTATATGATTAAGTTAAATGGCTTGGCTGTTACCTACTAATATATCTTGTCCTTCTGTTATTCTTGACTTGTAAGACAACCCAAGATCTACACTGAAATGGAATTCTGTTCTCATTTACACGCCTGATTTTAGTTGGTTATTAAAGCTAATTTGTTCAGTGGCCTATAATAATTAGAGGTGCTGGACTGCCCCCAGTGTAAAGATAATTGCTGTCTGACTTTATAGCATTTGTTGACTTCATTTTGATTATAATTATGTCTGCCTTGTTGAGATAGACAAGGAGATTGTTTTCCATCAAAATTAGTGTTTAGAAATTATACAAATTTCCCTATTCAATTCCATATTTGGTATTATTATGTCATAACTTGAGGTCAGCCTCAGCCATCTAATATAATCCTCTTGTTACATTCTGTATGTAACAGGTTACAAAGATTATTGGTGTTTCATACATAACATGTTAGTATAAAGTAAAAGTAGATATCATTTTGATATTTAAGATTTTAAAAATGATTCTCTTTGATCCTGCAGTTATTTTGGTCTCTATCTATAGGAGTGTTCAGCAAGATGATGGGAATGTTGACTGGATATTTATTTATTGGCTAGGGGTGTCTTAACGTATGTGGTTTATTGTAATGCCACGATTGGATTGAAAAGAAATATTTGTTTGTTTATTATTGTAGGAGCTTAGGGTAGGGACCCATCTCTTATCTTTCCTTTTCTCCATTTAAAGGGATTTATTTTTGGATAAATACTCCCAACCTACCAAATGCCCCAACCAAATTCCTCATGTTGTCATCTCCCAAATAACGACTCCCCCCAATAGGAACATACTTCTCTAGCTTTACAAGGTTCCTCCTCTAGTTTACTTTAATTTCTTGTTTTGATTATGGTTTGTAAAACCTAACACAAATTTGGCACACAATGACAACTCTTTAGTTCTACTTAAAAGAAAAACTCTTTAGTTTGTTTTTGTTT

mRNA sequence

ATGGACAATCACAGTTCCTTGAAAGCCCATTATTTCGATCACGTCATCTTCAATCAGCCTCGCGAACAACAATTGAAGCAGGCTGAAGGATTCAAATACATGGCTTTAACGAACTTCATCTTGACGGTGGCCGGAGTTAGCGCCGTGGTTCTTCTTTTGAGGAGCGATGTGAAGCAATCAGCCTCAATCTTCAGGCGCAACGTCAAGCACATCCGCCAGTGGCTTGAAGAAGAATCTGCCTCTGCCTCCAATCAATCCGAGAAAACATGACCCAAATTCTGGTTGGACCGCGGCTGTTATCTAAAGCACAAATTTTGTGGCATAATGTAGTCAAGGCTTTAGTTTCTGAGATTTGGTTTGAAAGAAATGAGCAAGTTTTTCATGATAAGCCTTCAAATTGGTCAGATCAGCTTGGATCTACTCGTTTACTAGCATCTTCATGGAGTTCCTAGTCAAAGTTCTTTGAAAATTACTTTATTCAGGACATGTCTTGACTAGAATGCACTTATTCTCTATGTAATCATGTTACTAAGTTATCTTAACAGATTTCTTTGCAAACGGATATGATGAGGGTGCTAAAGATGTGTCAACCTAGTTGAGATATCTGGATGCATCTCTTGATCCTTAGTTTCTATATTCTTGTAATTTTGTTTCACTATATCCTGAGCATTAGTCTCTTTTCGTTTCATCAATGAAAAGTTATATTTCTGTTTAAAAAAAATAATAATAATAAATAAATAAATTAAAAGTTCTCTTTCTTGGGAATACTTCACCGACTGGGAAGTCGGGCTCCTATTGGCATATTTCCTTAGCCTCTAGCCTCTAGAATCTCATATCTATTTCCTTGTTTTTTTAATTATTATTATTATTATTATTATTTTAATGGTATTAGATCCAATAGCACAATATTAGCAAGTTTAATGTAGTGTAGTTATGTTTGGCCAGAAGAATATTTGAGTTGGTGAGTGAAGAATATGACAGATGCATAAATAGAAAGTAATATAAGAAGAAAAGATGTCAAGCTTATGGGTTATGGCGATTTCATAGAACCCGAGTCTTTAAGTTCTCCATTTTGGCATGTGAATGCAACAGGCTGGTGCTCCTTTTGTAGGCCATACTTTTGTAATGTAAATACGATTGTGATGTTGTTCTTTCAGGACTGTGGAGAAAACAACCAAGGAGCTGGAAGCCAAGACTTCTCATAAAGATATTCCCAAAGACGACAAGCACTAACATATTGGTCGTTTAGCAATTTATTTTGGTCTCTATCTATAGGAGTGTTCAGCAAGATGATGGGAATGTTGACTGGATATTTATTTATTGGCTAGGGGTGTCTTAACGTATGTGGTTTATTGTAATGCCACGATTGGATTGAAAAGAAATATTTGTTTGTTTATTATTGTAGGAGCTTAGGGTAGGGACCCATCTCTTATCTTTCCTTTTCTCCATTTAAAGGGATTTATTTTTGGATAAATACTCCCAACCTACCAAATGCCCCAACCAAATTCCTCATGTTGTCATCTCCCAAATAACGACTCCCCCCAATAGGAACATACTTCTCTAGCTTTACAAGGTTCCTCCTCTAGTTTACTTTAATTTCTTGTTTTGATTATGGTTTGTAAAACCTAACACAAATTTGGCACACAATGACAACTCTTTAGTTCTACTTAAAAGAAAAACTCTTTAGTTTGTTTTTGTTT

Coding sequence (CDS)

ATGGACAATCACAGTTCCTTGAAAGCCCATTATTTCGATCACGTCATCTTCAATCAGCCTCGCGAACAACAATTGAAGCAGGCTGAAGGATTCAAATACATGGCTTTAACGAACTTCATCTTGACGGTGGCCGGAGTTAGCGCCGTGGTTCTTCTTTTGAGGAGCGATGTGAAGCAATCAGCCTCAATCTTCAGGCGCAACGTCAAGCACATCCGCCAGTGGCTTGAAGAAGAATCTGCCTCTGCCTCCAATCAATCCGAGAAAACATGA

Protein sequence

MDNHSSLKAHYFDHVIFNQPREQQLKQAEGFKYMALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEKT
Homology
[Close]
BLAST of CcUC05G095840.1 vs. NCBI nr
Match: KAG6588894.1 (hypothetical protein SDJN03_17459, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.3 bits (251), Expect = 4.5e-18
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 0 

Query: 27  QAEGFKYMALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQS 86
           + EGF+ MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASAS   
Sbjct: 56  KVEGFELMALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASKTV 115

Query: 87  EK 89
           EK
Sbjct: 116 EK 117

[Close]
BLAST of CcUC05G095840.1 vs. NCBI nr
Match: XP_023531886.1 (uncharacterized protein LOC111794015 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 100.1 bits (248), Expect = 9.9e-18
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0 

Query: 27  QAEGFKYMALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQS 86
           + EGF+ MALTNFILTVAGVSAVV+LLRSDVKQSASIFRRNVKHIRQWLEEESASAS   
Sbjct: 53  KVEGFELMALTNFILTVAGVSAVVVLLRSDVKQSASIFRRNVKHIRQWLEEESASASKTV 112

Query: 87  EK 89
           EK
Sbjct: 113 EK 114

[Close]
BLAST of CcUC05G095840.1 vs. NCBI nr
Match: EOY02839.1 (DNA double-strand break repair rad50 ATPase [Theobroma cacao])

HSP 1 Score: 97.8 bits (242), Expect = 4.9e-17
Identity = 56/83 (67.47%), Postives = 66/83 (79.52%), Query Frame = 0 

Query: 6   SLKAHYFDHVIFNQPREQQLKQAEGFKYMALTNFILTVAGVSAVVLLLRSDVKQSASIFR 65
           SL  + FD ++ N     + K+  G+K MALTNFILTVAGVSAVVLLLRSDVKQSA+IFR
Sbjct: 50  SLSPNRFDSLVKN----FRCKRKFGYKVMALTNFILTVAGVSAVVLLLRSDVKQSAAIFR 109

Query: 66  RNVKHIRQWLEEESASASNQSEK 89
           RNVKHIR WLEEES++AS  +EK
Sbjct: 110 RNVKHIRNWLEEESSAASKAAEK 128

[Close]
BLAST of CcUC05G095840.1 vs. NCBI nr
Match: KAG7022659.1 (hypothetical protein SDJN02_16393 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.4 bits (233), Expect = 5.4e-16
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 34 MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK 89
          MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASAS   EK
Sbjct: 1  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASKTVEK 55

[Close]
BLAST of CcUC05G095840.1 vs. NCBI nr
Match: XP_038899134.1 (uncharacterized protein LOC120086491 [Benincasa hispida])

HSP 1 Score: 94.4 bits (233), Expect = 5.4e-16
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 34 MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK 89
          MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASAS   EK
Sbjct: 1  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASKTVEK 55

[Close]
BLAST of CcUC05G095840.1 vs. ExPASy TrEMBL
Match: A0A061EKL3 (DNA double-strand break repair rad50 ATPase OS=Theobroma cacao OX=3641 GN=TCM_017246 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.4e-17
Identity = 56/83 (67.47%), Postives = 66/83 (79.52%), Query Frame = 0 

Query: 6   SLKAHYFDHVIFNQPREQQLKQAEGFKYMALTNFILTVAGVSAVVLLLRSDVKQSASIFR 65
           SL  + FD ++ N     + K+  G+K MALTNFILTVAGVSAVVLLLRSDVKQSA+IFR
Sbjct: 50  SLSPNRFDSLVKN----FRCKRKFGYKVMALTNFILTVAGVSAVVLLLRSDVKQSAAIFR 109

Query: 66  RNVKHIRQWLEEESASASNQSEK 89
           RNVKHIR WLEEES++AS  +EK
Sbjct: 110 RNVKHIRNWLEEESSAASKAAEK 128

[Close]
BLAST of CcUC05G095840.1 vs. ExPASy TrEMBL
Match: A0A6J1DS71 (uncharacterized protein LOC111023400 OS=Momordica charantia OX=3673 GN=LOC111023400 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.9e-16
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 34 MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK 89
          MALTNFILTVAGVSAV+LLLRSDVKQSASIFRRNVKHIRQW+EEESASAS   EK
Sbjct: 1  MALTNFILTVAGVSAVILLLRSDVKQSASIFRRNVKHIRQWIEEESASASKTVEK 55

[Close]
BLAST of CcUC05G095840.1 vs. ExPASy TrEMBL
Match: A0A6J1J664 (uncharacterized protein LOC111482124 OS=Cucurbita maxima OX=3661 GN=LOC111482124 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.7e-16
Identity = 51/55 (92.73%), Postives = 51/55 (92.73%), Query Frame = 0 

Query: 34 MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK 89
          MALTNFILTVAGV AVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASAS   EK
Sbjct: 1  MALTNFILTVAGVGAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASKTVEK 55

[Close]
BLAST of CcUC05G095840.1 vs. ExPASy TrEMBL
Match: A0A6J1FA54 (uncharacterized protein LOC111442202 OS=Cucurbita moschata OX=3662 GN=LOC111442202 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.7e-16
Identity = 51/55 (92.73%), Postives = 51/55 (92.73%), Query Frame = 0 

Query: 34 MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK 89
          MALTNFILTVAGV AVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASAS   EK
Sbjct: 1  MALTNFILTVAGVGAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASKTVEK 55

[Close]
BLAST of CcUC05G095840.1 vs. ExPASy TrEMBL
Match: A0A7J6GS06 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_010271 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.0e-15
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 34 MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEK 89
          MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIR WLEEESASA+  +EK
Sbjct: 1  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRNWLEEESASATKAAEK 55

[Close]
BLAST of CcUC05G095840.1 vs. TAIR 10
Match: AT5G14105.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-15
Identity = 40/56 (71.43%), Postives = 50/56 (89.29%), Query Frame = 0 

Query: 34 MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRQWLEEESASASNQSEKT 90
          M LTNFILTVAGV AVV+LLRSDVKQS ++ RRNVKHIR WLEEES++AS+++ ++
Sbjct: 1  MGLTNFILTVAGVGAVVMLLRSDVKQSVTVLRRNVKHIRHWLEEESSAASSKAAES 56

The following BLAST results are available for this feature:
BLAST of CcUC05G095840.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6588894.14.5e-1888.71hypothetical protein SDJN03_17459, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023531886.19.9e-1887.10uncharacterized protein LOC111794015 [Cucurbita pepo subsp. pepo][more]
EOY02839.14.9e-1767.47DNA double-strand break repair rad50 ATPase [Theobroma cacao][more]
KAG7022659.15.4e-1694.55hypothetical protein SDJN02_16393 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_038899134.15.4e-1694.55uncharacterized protein LOC120086491 [Benincasa hispida][more]
BLAST of CcUC05G095840.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC05G095840.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A061EKL32.4e-1767.47DNA double-strand break repair rad50 ATPase OS=Theobroma cacao OX=3641 GN=TCM_01... [more]
A0A6J1DS715.9e-1690.91uncharacterized protein LOC111023400 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1J6647.7e-1692.73uncharacterized protein LOC111482124 OS=Cucurbita maxima OX=3661 GN=LOC111482124... [more]
A0A6J1FA547.7e-1692.73uncharacterized protein LOC111442202 OS=Cucurbita moschata OX=3662 GN=LOC1114422... [more]
A0A7J6GS061.0e-1590.91Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_010271 PE=4 SV=1[more]
BLAST of CcUC05G095840.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G14105.11.3e-1571.43unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35135OS05G0517800 PROTEINcoord: 22..89

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CcUC05G095840CcUC05G095840gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC05G095840.1-exonCcUC05G095840.1-exon-CicolChr05:19453562..19453642exon
CcUC05G095840.1-exonCcUC05G095840.1-exon-CicolChr05:19453712..19453881exon
CcUC05G095840.1-exonCcUC05G095840.1-exon-CicolChr05:19457101..19458102exon
CcUC05G095840.1-exonCcUC05G095840.1-exon-CicolChr05:19458842..19459288exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC05G095840.1-cdsCcUC05G095840.1-cds-CicolChr05:19453562..19453642CDS
CcUC05G095840.1-cdsCcUC05G095840.1-cds-CicolChr05:19453712..19453881CDS
CcUC05G095840.1-cdsCcUC05G095840.1-cds-CicolChr05:19457101..19457119CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC05G095840.1-three_prime_utrCcUC05G095840.1-three_prime_utr-CicolChr05:19457120..19458102three_prime_UTR
CcUC05G095840.1-three_prime_utrCcUC05G095840.1-three_prime_utr-CicolChr05:19458842..19459288three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CcUC05G095840.1CcUC05G095840.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005747 mitochondrial respiratory chain complex I