CcUC05G095200.1 (mRNA) Watermelon (PI 537277) v1

Overview
NameCcUC05G095200.1
TypemRNA
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr05: 17578005 .. 17579414 (-)
Sequence length831
RNA-Seq ExpressionCcUC05G095200.1
SyntenyCcUC05G095200.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGGTACAGATACATTTTCCCTACTTTCTGTCCATCATCGTCGCGGCAGAATTCCAACTGATCATTCTCATTGATGATCTCCACGTTCAGCCTCGGCATCTTCTCTGCTAGTGTCTTGCAGCCACCAAGAGTAATCTCACAGGACGACATCCAAAGGGATCGCATTGTTTCATACTTCCCAACGTCCTGCAGAAGTGCCATGTCGCCAAACGGGCTGTCCATGATCTCAAGCTTGCGGAGTTTCTTGCAACCATTCAGTACATGAATCATTGCCTTGTCACTATCCCCAGCAAACGCTAATGAAAGCATTTCTAGATGCTTTGCATATTCACCAATGTAATAGAAGACCTGATCTGTAAGAAGGCCTGAGAGAGATAAACGTCTCAGACCTTTGCACGCTTGAACGATCGCCCCAAAACCTTCATCCAGTGCATTCCCAGTTACAGGGTCCGGTTTTGTGGGATCGAGGATGCACAACCTGAAGCGTATGAAGTTTGGGTTGTTCTTTGCTACAGTTACAAGGGCAGCATTTGTCATCTGATGGCAGAAGTATAATATAGAATGAAGTTTCGGGCAACCCATCGATATAGCAACCAAACCTTCTTCTGTGACAGCAACATTACCAGCCCCAGAGAGATCAGACGGGAAAACCCTCAATTCCTGCAATTCTTTACAAGTTGAAGCAACAACTTCCAGTCCTTTGTCTCCAATACCATCCAGAATCTGTGAAGATCAACCAAGAACACTTCTCATCATTGAAAATATATAAAACAGACCCACACATAGAGGTGAAATCATATACATATAAAGGTCTATATTGTACTTGTAGTAGTAAGGTCGGATGATCATACCCACAAGCGCTGAAGTTTCTCACAATACTGAATGACCTTTATGAGCTCGTTGCCATGAAGCCCAGGACTATAGCTCAGGTTCAAGGATGTCAAATTCGAGCAAATTGGGTAAATGGAGGCCAGGCAGCGAGGAGACACATCTAAAAAGCCAGATAAACTCCTGATAGATTTGCATTTCAGAATGGTGTTCTTGAGATTGTCATAGATCTTAGAATCTCTATCATGAACGTAAGACCCCGTGCCCAAGTCCACAAGTTGAGGAGCACATGCCAATATATTTTGCAAGGTTTCAAGAGGCACTGCACGGTTCAGCCTCAAACTCTTGAGGTTGGGAGATCTTGCCACAAGCCTCTCAAGAGCGCGCAGATTTACTTCTCCTCTGAGGCAAGCAAAATTCAGGGAGACAAGCGATGTGCAGCTCTCTGGAAAGCAGCTAAGCCAGTAATTATTATGGTCATCAATTTCATTCTCTTGCAGGTCTAGCTCCCTCAGAAACCTAAATGGAACGAAAACCCAACGGGCGGACAGAAAGCAAAACACATCAATAAACCATAA

mRNA sequence

ATGTACGCCACCAAGAGTAATCTCACAGGACGACATCCAAAGGGATCGCATTGTTTCATACTTCCCAACGTCCTGCAGAAGTGCCATGTCGCCAAACGGGCTGTCCATGATCTCAAGCTTGCGGAGTTTCTTGCAACCATTCAGTACATGAATCATTGCCTTACCTTTGCACGCTTGAACGATCGCCCCAAAACCTTCATCCAGTGCATTCCCAGTTACAGGGTCCGGTTTTGTGGGATCGAGGATGCACAACCTGAAGCGTATGAAGTTTGGGTTGTTCTTTGCTACAGTTACAAGGGCAGCATTTGTCATCTGATGGCAGAACAACATTACCAGCCCCAGAGAGATCAGACGGGAAAACCCTCAATTCCTGCAATTCTTTACAAGTTGAAGCAACAACTTCCAGTCCTTTGTCTCCAATACCATCCAGAATCTGTGAAGATCAACCAAGAACACTTCTCATCATTGAAAATATATAAAACAGACCCACACATAGAGAATGGTGTTCTTGAGATTGTCATAGATCTTAGAATCTCTATCATGAACGTAAGACCCCGTGCCCAAGTCCACAAGTTGAGGAGCACATGCCAATATATTTTGCAAGGTTTCAAGAGGCACTGCACGGTTCAGCCTCAAACTCTTGAGGTTGGGAGATCTTGCCACAAGCCTCTCAAGAGCGCGCAGATTTACTTCTCCTCTGAGGCAAGCAAAATTCAGGGAGACAAGCGATGTGCAGCTCTCTGGAAAGCAGCTAAGCCACTCCCTCAGAAACCTAAATGGAACGAAAACCCAACGGGCGGACAGAAAGCAAAACACATCAATAAACCATAA

Coding sequence (CDS)

ATGTACGCCACCAAGAGTAATCTCACAGGACGACATCCAAAGGGATCGCATTGTTTCATACTTCCCAACGTCCTGCAGAAGTGCCATGTCGCCAAACGGGCTGTCCATGATCTCAAGCTTGCGGAGTTTCTTGCAACCATTCAGTACATGAATCATTGCCTTACCTTTGCACGCTTGAACGATCGCCCCAAAACCTTCATCCAGTGCATTCCCAGTTACAGGGTCCGGTTTTGTGGGATCGAGGATGCACAACCTGAAGCGTATGAAGTTTGGGTTGTTCTTTGCTACAGTTACAAGGGCAGCATTTGTCATCTGATGGCAGAACAACATTACCAGCCCCAGAGAGATCAGACGGGAAAACCCTCAATTCCTGCAATTCTTTACAAGTTGAAGCAACAACTTCCAGTCCTTTGTCTCCAATACCATCCAGAATCTGTGAAGATCAACCAAGAACACTTCTCATCATTGAAAATATATAAAACAGACCCACACATAGAGAATGGTGTTCTTGAGATTGTCATAGATCTTAGAATCTCTATCATGAACGTAAGACCCCGTGCCCAAGTCCACAAGTTGAGGAGCACATGCCAATATATTTTGCAAGGTTTCAAGAGGCACTGCACGGTTCAGCCTCAAACTCTTGAGGTTGGGAGATCTTGCCACAAGCCTCTCAAGAGCGCGCAGATTTACTTCTCCTCTGAGGCAAGCAAAATTCAGGGAGACAAGCGATGTGCAGCTCTCTGGAAAGCAGCTAAGCCACTCCCTCAGAAACCTAAATGGAACGAAAACCCAACGGGCGGACAGAAAGCAAAACACATCAATAAACCATAA

Protein sequence

MYATKSNLTGRHPKGSHCFILPNVLQKCHVAKRAVHDLKLAEFLATIQYMNHCLTFARLNDRPKTFIQCIPSYRVRFCGIEDAQPEAYEVWVVLCYSYKGSICHLMAEQHYQPQRDQTGKPSIPAILYKLKQQLPVLCLQYHPESVKINQEHFSSLKIYKTDPHIENGVLEIVIDLRISIMNVRPRAQVHKLRSTCQYILQGFKRHCTVQPQTLEVGRSCHKPLKSAQIYFSSEASKIQGDKRCAALWKAAKPLPQKPKWNENPTGGQKAKHINKP
Homology
The following BLAST results are available for this feature:
BLAST of CcUC05G095200.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC05G095200.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC05G095200.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC05G095200.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 255..276

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CcUC05G095200CcUC05G095200gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC05G095200.1-exonCcUC05G095200.1-exon-CicolChr05:17578005..17578076exon
CcUC05G095200.1-exonCcUC05G095200.1-exon-CicolChr05:17578119..17578379exon
CcUC05G095200.1-exonCcUC05G095200.1-exon-CicolChr05:17578623..17578796exon
CcUC05G095200.1-exonCcUC05G095200.1-exon-CicolChr05:17578862..17579023exon
CcUC05G095200.1-exonCcUC05G095200.1-exon-CicolChr05:17579135..17579289exon
CcUC05G095200.1-exonCcUC05G095200.1-exon-CicolChr05:17579408..17579414exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC05G095200.1-cdsCcUC05G095200.1-cds-CicolChr05:17578005..17578076CDS
CcUC05G095200.1-cdsCcUC05G095200.1-cds-CicolChr05:17578119..17578379CDS
CcUC05G095200.1-cdsCcUC05G095200.1-cds-CicolChr05:17578623..17578796CDS
CcUC05G095200.1-cdsCcUC05G095200.1-cds-CicolChr05:17578862..17579023CDS
CcUC05G095200.1-cdsCcUC05G095200.1-cds-CicolChr05:17579135..17579289CDS
CcUC05G095200.1-cdsCcUC05G095200.1-cds-CicolChr05:17579408..17579414CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CcUC05G095200.1CcUC05G095200.1-proteinpolypeptide