CcUC05G094210.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC05G094210.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	THO complex subunit 4D
Location	CicolChr05: 13476577 .. 13486209 (-)
Sequence length	1343
RNA-Seq Expression	CcUC05G094210.1
Synteny	CcUC05G094210.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTCCTTTGGATATGTCACTAGAGGATGTGATAAAGAAGAATAACCGTGAGAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGACGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGTTAGGATCAGTTCGTAGAGGTCCTCTCGGCATAAACGCACGGGCATCTGCTTACTCAATTCGCAAGGCAAGCTTCAAACTGTGATGTTTAATGCATATGCTTGAGAACCTGATATTCCTTGAAAATACATGCTCACGGGGATTTCAAATAACACTATAGTAACTCTTAACAGAAGTGGATCAGTAAAATTGTTGTTCTGTGGAGAATCTCATTGTGGGTCACCCTCTGATCCGAATCGTCTTCTGGTGTATTTGTACCATTATCTTTGCAAATATTGAATACGTGTGGGTTATCTGGGTTATTTTCAAAGGACTTTCAAGGGTGGAGACTTATATTCTTGTCGATTTATAAGCTGATATGTATTTTCCCCGTCTGGATTCTTATCTGCATGCTTTCATCAGCCCCCACGCAGAATGAAGAATGTTCAATGGCAGCATGATTTATTTGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTGAAATTGGCACAAAGTTGTATGTTTCCAACTTGGATTATGGGGTGACCAAAGAAGATATAAGGGTACAACTCAAGCCATATATATTTGACTAAAGATGCTTTCTCTTCATTTTTTTGATTAATATTCACTTGGAACCTGACGGTGAACTCAGGAGTTGTTCTCTGAGATTGGAGACCTGAAACGATTTGCAATTCATTATGACAAAAATGGTCGTCCAAGCGTAAGTTCCTCCACTGTCTTTGTAAAATTATGTAGTAATGTGTTGCTATTTGGCTTTCTCTGCAATCAAGTATCAATATTGTTTTGATAGTCACAACTGTGTGACCATTGAATCAATATTTGCTTTTGATGGATTCAACTTTATGTGTATGCAGTACTGAATATTTTTTACTTTAGTAGTTGGATAGTGCTGGAAAAAACTATTATAAGGAACTTTTGACTAGAATACATGTTACAACTTCAAGTTAATGAATAAATTATATATATTGCATGTTTTTATATAATTTCTCTTTAATGGTTTAATATTTTATTTCATGAAGAAAATTATGCTCGAAAGTAATTAATTGATCATTAGTAATATGTGGTGCAGAACTTTCCGTTTATAATTAAAATATGGATGGAATAGAAGTGATCTTATTTCGAGTAAACAAATGTTGTATTTTTAATTAACTAACCTGTGCTGGCTAGGCTCAACACACTTCATTTTAACAAGTTTGAATGTAGCTCATTTAATATATTCAGTTCATTTCAATCTAGATATCTCTAATTGTTGCTCCTCTTCATTGTCTTTGCTTATCATTATTATTCAAATTTAGTTTCTCTTAAGTTAGCATGAGATTTATAATAAAATATGATAATTACTGTATTTCTGCTTTAAGATGCATATATAAAAGTTGGCTTCCTTATCAAGCTTTAGTTGGCTGATAAACTTTCCGTTGTTTATTGAAGGGCTCAGCAGAGGTGGTATATACTCGAAGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAAATGTTACTGGAGTGAATGGAAGAAGCAGGAGGACAGTTGTTCTAACGTATGTAGTATTTTTTAGTTACTGTTTCTCTTCCTTTTTGTCCCTTTTCTTAATTAATTTTAACATCTTTATAGGTAATTATTGTGTGCTTGGAGTAGAAAGTTACTGCACATTATTCTATTTCTCGGTCATTTCTATCTTGCTACTTTTAAGTTGCTTCTTATTCCCCAAAGGGAAACTATCACCGGCCTCATTCCCAATTAGTCGGATCAATAGTGTTTGAAAATCTTTCTGAAGGCATCTCTAGATTGGCTGATCAAGGTTCTCCCTTTAACATCTCAACAAATTCCAAACTTGCTTGTAGATTGACAAACAAATAACAGACTCCATTTGTTTAGCTAGTGGAATAGCTGATGCTAATAAGGAGCAGACTCAAGGATAAATCTTTATATTAGACTTGGAAAAGACCTATGAGCTAGTTAGTCAAAAACTTTCATCCAAAGACTTTGAATAGAAAGGTTCTGAGCCAATTGGGTTAGATGGAAGCTTAATTGTTTGATAGTTTACCTAGTATCAAAATTTCCATGTTCATCAATGGAAAGCCTAGAGTATGAGTTAAACTTTAAAGTTCTTAAATAGGTGATTTTGGGGGTGTTTGGGGCGCCGAGTTGAGTTTTGAATTTTGGAGTTAGGAAAAATTTGTGTTTGGGGTGCAAAGTTGTGAAGATGGAGTTGCTCGATAAATTTACAAACTTTAATAGTGTTCCCTATTGAAGTTGGTAGAGTTGAGTTATTTAACACCGACTTATAAAGTTGTTGGGCCAAACACTCCATTTTTGTCTATGTAGTACTAGATAATTGGGATAAAATATGGATTTTATTCAAATGATTGGGATGGAGGCCTAGATTCTTAGGAACCTTCCGAAGTTTGTGGAAGGTGAACTCCTATTTTTTCAATTTTCACTCTTTATTTTCCTTTTCCATGGGGGAGGGTAGTAAACTGAAACCTAAAATGTATCAATTGATACAACCCAGCTGCAATATATATCTTGAATAGAAAGCCCGTCAAATTTCTCGGAGGATCACCATGAGGAAAATTTTCAATATGGGTTGTATCAATTGATCCATTTTAGGTTTCACTTTACTACCCTCCCTCCAAGATGTTTGAAGGGCTTTCTATTTGAGATTTATATTGCAGTTGGGTTGTATCAATTGATCCATTTTAGGCTTCACTTGGACTTTAAGACTTCCAAATTCAGTTAATAATAGTAGGTTTTTTTTTTTAATGATAACAACTGCTTTCATTGAGAAAAAAATGAAAGAATACAAGGGTATACAAAAAACTAGCCCACTGGAACACCCCAACTAAAAGAAGGGTTCCAGGTAAGTAAAATGTTTCCTAAGGAATAGTTACAAAAAAGCTTCGAAACAGAAACCCAAAGGGACACATGAAATCTCACCAAATACCGAACGGTCCCTAGCTCTAAACACTCTATCATTCCTCTCCCCCCAAATGTCCCAAACAACCGCACACACCCAGCAAGCCACAAAAAAACGACCTTTCTCTCTGAAAGGCGGATGGAGGAGAAACTCCTCGATCGTTGCACGAATGTCTCTTTACCCAACAAAGCTAACATTGAACTCCTGCAAGAAGAGACTGCACATCGTCCTTGCATATTTGTAGTTCCAAAGGAGATGATCTCGATCTTCCTCAACCCTCCAATAAAGAATACAATAAAAAGGTCCCACAAGCGAAGTTCTTCTCCTAACAAGCCTATCAAAAGTGTTCACACGACCAAGCAAGACTTGCCAAATAAAAAACCTGACTGCCTTAGGAATCTTAATCCTCCAAATCACATCGAACACAGACTCCCCAATGGGAGAGGGACCCAATAACAATCTAAAGAAGGATTTGTTGCAGGAATATTGAGTTACTTTGCCTTCGTTGTTCTTCCCAGGCACAGTGAATTAGAGCCTGCTAAATCTCTTATCGATATTGAATGAAGTACAGGTCTCCGAAAATTACTATTGCTGAAATTAAACATTGAAGAATAAGGCAGCCAAAGAAAAAAACAAGCAAAATACTCCCAGAAGTAAGGCCATAGATTTTAAAATTCATGGCAGCTAAAACATCCATCCAAATGCCAAACCACCATCATAACCCATGACCCAAAATAATCTCAGCACCAATAAAAGAGGAATTTCGTCTTGAAGAGGGATAAAGAAGAGCTGCCTTTGTTTGTATACGAAGGCCACTAGAAGAATTTCTTATTCTGAATCGAAGTTGAAAATTCTGTATTGAAGCTGCTCACTCTATCAATTGGATTGCCACTAAAATCTAAAAACTTCTCTATTACACTTATATAAACTACTTCCTTGGTTTAATTAATAGTACCATAATAAAAGGGGTGAACCTTCTGATAACCCCCATAACAACCCAACATGATTTGAGGATGTATCTAGTTTGAACGTAAAATGTCAAAAGTTGGAATTTTTGGGGGTCAACCTTGATTCATACGTTCACTTTATTAAGGAATTTGGATTGCAAGGTTGGTGATTGACCAGCCACCTATCTAGGCTTGCCTCTGAATGCTGAGCATAAAACCTAATCATTTTTCGGTTTCCATCATCGAGAAAATTTAGGAAAGACTGTACTCATACATCTCTAAAGAAGGCCGATAGATTCTCATTCAAGCTATACATTGGCCAACCTTCCCATCTACTATTTACCCCTTGGCCCATCTATCCCCTCAGCATCTGCTGAAAGACTCTTTTTGAACTTTTTGTGGATGGACAACGAATAAAAGCGTTCTTAACCTTAGATGGGAAGAAGTAAGTTAACTTTTGGAGAAGGAGGCTTATGGATTGTTAACCTAAAATAGAATAGTATATCCTTGTTGGCTAAATGGATTTGGAGATTTCATAAAGAGAAATCCACCCTGTGGAGGGAAGTTATTATTTCACACATCACTTGCAAAGTTGGTAAGGTTATTGGTACTCCTGATTTGTGGATTGGTATTGAGGCTCTGAAAGACAGCTTTCCATCCTTGTTTGCTAACACAGGGTTGATTGTTTTGTGGCTGATATGTGGAACAATCTTCAGCTTCTTGGAAATTTTACCCTAGGAGATATTTGATGTATGGAGAAACTGTGATTGGGCCAGCCTTCAAATGCTCTTGTCGGTGTGAATCTCAGTGAATCCTCTGATGACATTTGGTGCTGGAATTTAGAGATGGATGTCCCCCTCTTTTCAAATTCGTTATCTTCGATGGGGGAATTGGGCTGTAAAGATCTATCTAAGCATTAAGGAAGAATTATTTCGCAAAAAGGTGAAGTTCTTTTTAGGGGAGTCAAGTCACTCATGTTTTGATACTTACGACAGCCATCAAAGGCATCCTTGGATATCCATCTCTCCTAACTGCTGCATTTTGTGCAAAATCAATGGGGAATTGCATAGTTATCTCTTGTTTTGGTGACAAGCCAACATCTTTGGGACTTCATTTGTCAAGACAAGAGTTTAGGTGGCAGATCACCTTTCCTTTTGATGTTAGGGACACTCTTTCTATTGTTTTCAGTGGAGACCTTTCCAAGGAGAAGAAGATTGTCTGTCTGAACCTCATTTGGGCTTTCTTGTGGTCTTACTGGTTGGAACGCAACTCTAGTATCTTCATAGATAAGAGGAACAAGATTGAAAATTCTGTCCCCGTTGTTACAAACATACGATTCATGGGGAGATAAAGAAATAGATCGAACCGATCGTCTGTGTGTCACCCTTTTCCAATGCAAGGAAGATTAAAAATTACATATATTAGACATATTTTCGATTTAAATATAAACAAACCAAATCCTATTTCTTAATTCTAAATCATTTTAGATCCGATCGAAATAGGATTTTCGGGATAAGGAATAAACAAACCATGGATAAATCCAAGCGACTCCCTCTTAAATCCGAACGATCTTTTCGTAGGCGTTTGCCCCCGATTCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGTCGATTTATTAGTGAACAAGGAAAAATATTATCTAGACGGGTAAATAGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATTAAAAATTACATATATTAGACATATTTTCGATTTAAATATAAACAAACCAAATCCTATTTCTTAATTCTAAATCATTTTAGATCTGATCGAAATAGGATTTTCGGGATAAGGAATAAACAAACTATGGATAAATCCAAGCGACTCCCTCTTAAATCCAAACGATCTTTTCGTAGGCGTTTGCCCCCGATTCAATCAGGGGATTGAATTGATTATAGAAACATGAGTTTAATCAGTCGATTTATTAGTGAACAAGGAAAAATATTATCTAGACGGGTAAATAGATTGACTTTAAAACAGCAACGCTTAATTACTATTGCTATAGAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAATGAGAAACAATTTGAAAGAAGCGAGTCGACCGCTAGAACTATTGGTCCTAGAACCAGGAATAAATAGGCTTACTCTTTAATTGAATTAAAATTCTAATCCAAACTCAACCGCAGATTGATGCTTTGTTCGAAAAATCCGAAAATCTAGATTTGATTGTCATGTCGTAAGAAAAAAAGAATAGTGGAAGAAGAATAAATCGTTTTTTTATTGANTCATGTCGTAAGAAAAAAAGAATAGTGGAAGAAGAATAAATCGTTTTCTTATTGAACATATTTGCTCATTTTGACTAATTTTTACTCTACCTTCTCGGAGTTCATTCTCCAGAGAACTCCATTTTAAGCATTCCGCTGCATTCTTTCCAATCTTCTTATTTTATGATCTTATTTCACATCTATTAAATACTTATCCTCTAATTCCAATCAAATTGAGCTCACCTTTTGTAGTTATAGTTGATCAAATCTCATGACCAATTGGAGATGTTTTGAACTGTTTCCTATAGAAAGAAAACCAACATGTTTTGGAATATCCTTAGAAGAACTTAAATCAACTGCCAGAGGGAAGAGCAGCCATTTTTTAGTGCTTTTCTTCGTCTTTAAATAATAGGGAAAGGCTTCATTGAGATCACCTCGGAGATAATGCTAATCCTTGACAGAAAACAGCATTTGGGAGTATTCCAAATAGTGGTTATTAGAGACAAAATAGTATGTAGTAAGTTTTGGGAGTTTAATGCTTTGAAGATATGTAATAAACACCATTTTCATCTAAATAGTTTTCAGTTCCATCATATGTAAAATCACTAAAAAGAAGTTCGATTGTGAGTACACTTCCAATGTAATGTAACTATACTAGATGCACAAATTCTTCCAACTGTCCTAAACTATCCTTTTCCGATTGCATTGTAGTTACTTCTTAAAATGCATCGACATCGTTTCTTGCTTTTAACTTGGAGAAAACTTACTCCACCTTAGAGGTAACTGTAGCATATCAATCCTCATGTCACACTGGAGGAACTTCTTGAGATTACTGAGTCACATATAGGACTTTTCTTGTAACCTATGTCATCAATGAATGTATAGAATTCTTGGGGACTTGGAGAAATCTGGAGAGGAGGTTTGAGAGTTGGTGACCTTTAATGCTTCCGTTTGGGCATTGGTCACTAGACTATTTTGTAATTATGATATCGGACAGGTTCTTTTGGACTGGAGTCCCTTCTCTAGTTCTGTTGGACTTTTGTTTTTTGGGGCTTATTTTTGTTTGTCCTTGTATTCTTTCATCTGTCTCAGAAAAAAGAAAAGAAAAGAAAAAGAAATGTTTAGATTGGCCTAATTTTGCACTGGTTTGTTAATGGTTTCTTATCTGATATAGACACTCCCTTGTCCTTGGCTGCGGTGTTGGAAACTGTCCCCCTCTGGAAATTGTATTTTGACATGTTTGATGAAAAAGAAACAGTCTGCTACAGATGATGAGTAATATTAATATTTGTTGGGTATATGCAGGCCTGAATCTGGTCGTACTGCTAGTTCTAACGTGGTCAACCCTTTTCCTGGGTAAGTTCTAATTGGACATTGCTTTGGGCATGAAATTTTTACATTCAATAGTGGAGTAGCTGGGTTTTATTGTTATTATTATACTTATAATCATGTTCTGGGATTGTTTCACTGCCTCCTAGTTGGATTGGTTTTGAAGTCATTTGTTTTTGGTTACTCGTCTCTCTGATTTTCTTTGGGGTGTTAGAATCGAGAGTTATATCTTTTCTACCTGTTAGGAAGTGTGGAAGACAAACTAATGACTTTTTTTTTTTTTTTCTTTTTTTTATTTTTTCTCTCTTCTTTTTCTTCTTATAAAAGTATTTTAAGGAAATTTTCAAATATAGCAAAATATGCCTTTGTTATTTTCTAAAATTAATATGGAGAAGAAAGAAACGAATACACGAGCAAAATATTATTTTTCTTGTAGTTTTTATTAGGTTTAATTATAAGTTTAGTCTCTAAACTTTTAAGATTTGTGCCTATATGGTCCATGAGTTTTCAAAAGTGTCTAATAGAACCCCAAACTTTCAATTTTGTATGTTGCAGATCTCTGACTTTAAAAATATCTAATAAGTCTTTTATTATTGTTTTTCTGTTTTTTTAATAAGAAACAAGTCAAAATAAAATATATTAATGGAAAGAAAACATAACCTAAAGGGCTATGGGATGAGAGGTCCCTAAGCCTAATTTGAGGAATTGGCAAAAGCCCTCCACTGTGTATTACAGTAAGAATTTTGCAAAGCTCTCACATGGATGCAGTAAGCTGTGCATTTTCCTTGTGTCTAATGGGTCGTTGACCTATTGAATATTTTTTAAAATTCATGGATCTACCATAATACAAACTTGAAACTTTAGGGTTCCATTAGATTAAAATTCAAATTTATATCCATTAAACATAGACCTTTAAAAGTTTGATTATGCTAGGCCAAAATTGGAAGTTGAGAAAGCAATCAGTGTAGGATAGGATTGAAGTCACTGGAGGTATCGTTTGGAGGGTTTTTTGTTTTTTTTTTTTTTTGGGATAGGATTGAAGGGTTACTGGTTTAAGTCTGAACTCCTATATTTATATATTTTACTTCTGTATTTTGTTTTTTAAAAAGGATTGATATTGTATATATGGTGGTTCAGCTTCTGTGACCAAATCTTTAAAAATGTTTGTCATGAGTTGGAAATGGAGTAAGATGAGTTAACTTTGCTTGAATTGGTAGAACTTGTTCTTATTGCTGTCTAGTTTTATTGAAGTTCTTGGGTTTTGTATAGTCCAAGCCGGCGTGGAGGGCTGAGGAATGCCCTTGGCCGTGGGCGAGGTGGCTGGAACCGTGGTTTAGGTCTAGGTGGAGGAGGCCGTGGCCGAGGGCGTGGTCGTGGTCGTGGTCGTGGCCGTGGCCAGGGAAAAAAGAAACCTGTGGAGAAGTCTTCAGATGAACTTGACAAGGAGCTTGAAAACTACCATGCAGAAGCCATGCAAACCTGAGGAATTTCGAATATGCAAAAATCGAAGTATGATCTGATTAAACCACTTATGTTAGCTGTGTAAGAATATATATAGCATTCTCGGGGGTGATTATTATTTTATTTTAATTTTTGTTCCAGTAGACTAGATTTGTATTTTGCCTGTTAATGGAGAATGATGCTGTTTGACCCTCTGTTATCAAAACTTCTACCTTTTTTGGTTGATCCTGAATGGAACGAGCTCGGATCATCGATCTCTCAAATAGGTAAATTGCTTTATGTATAAAGGATTTAGTTTAGTTGTCTTTATACATTGTTAAGAATGGGAATATCCTGTATTTAAAGGACCTATTCTTCAAAACCTTGTCGTCTGGCCATCACTGTACTCTTTTCACTTGCTATTGAGCTTCTCAT

mRNA sequence

ATGGCTACTCCTTTGGATATGTCACTAGAGGATGTGATAAAGAAGAATAACCGTGAGAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGACGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGTTAGGATCAGTTCGTAGAGGTCCTCTCGGCATAAACGCACGGGCATCTGCTTACTCAATTCGCAAGGCAAGCTTCAAACTAAGTGGATCAGTAAAATTGTTGTTCTGTGGAGAATCTCATTGTGGGTCACCCTCTGATCCGAATCGTCTTCTGCCCCCACGCAGAATGAAGAATGTTCAATGGCAGCATGATTTATTTGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTGAAATTGGCACAAAGTTGTATGTTTCCAACTTGGATTATGGGGTGACCAAAGAAGATATAAGGGAGTTGTTCTCTGAGATTGGAGACCTGAAACGATTTGCAATTCATTATGACAAAAATGGTCGTCCAAGCGGCTCAGCAGAGGTGGTATATACTCGAAGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAAATGTTACTGGAGTGAATGGAAGAAGCAGGAGGACAGTTGTTCTAACGCCTGAATCTGGTCGTACTGCTAGTTCTAACGTGGTCAACCCTTTTCCTGGTCCAAGCCGGCGTGGAGGGCTGAGGAATGCCCTTGGCCGTGGGCGAGGTGGCTGGAACCGTGGTTTAGGTCTAGGTGGAGGAGGCCGTGGCCGAGGGCGTGGTCGTGGTCGTGGTCGTGGCCGTGGCCAGGGAAAAAAGAAACCTGTGGAGAAGTCTTCAGATGAACTTGACAAGGAGCTTGAAAACTACCATGCAGAAGCCATGCAAACCTGAGGAATTTCGAATATGCAAAAATCGAAGTATGATCTGATTAAACCACTTATGTTAGCTGTGTAAGAATATATATAGCATTCTCGGGGGTGATTATTATTTTATTTTAATTTTTGTTCCAGTAGACTAGATTTGTATTTTGCCTGTTAATGGAGAATGATGCTGTTTGACCCTCTGTTATCAAAACTTCTACCTTTTTTGGTTGATCCTGAATGGAACGAGCTCGGATCATCGATCTCTCAAATAGGTAAATTGCTTTATGTATAAAGGATTTAGTTTAGTTGTCTTTATACATTGTTAAGAATGGGAATATCCTGTATTTAAAGGACCTATTCTTCAAAACCTTGTCGTCTGGCCATCACTGTACTCTTTTCACTTGCTATTGAGCTTCTCAT

Coding sequence (CDS)

ATGGCTACTCCTTTGGATATGTCACTAGAGGATGTGATAAAGAAGAATAACCGTGAGAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGACGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGTTAGGATCAGTTCGTAGAGGTCCTCTCGGCATAAACGCACGGGCATCTGCTTACTCAATTCGCAAGGCAAGCTTCAAACTAAGTGGATCAGTAAAATTGTTGTTCTGTGGAGAATCTCATTGTGGGTCACCCTCTGATCCGAATCGTCTTCTGCCCCCACGCAGAATGAAGAATGTTCAATGGCAGCATGATTTATTTGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTGAAATTGGCACAAAGTTGTATGTTTCCAACTTGGATTATGGGGTGACCAAAGAAGATATAAGGGAGTTGTTCTCTGAGATTGGAGACCTGAAACGATTTGCAATTCATTATGACAAAAATGGTCGTCCAAGCGGCTCAGCAGAGGTGGTATATACTCGAAGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAAATGTTACTGGAGTGAATGGAAGAAGCAGGAGGACAGTTGTTCTAACGCCTGAATCTGGTCGTACTGCTAGTTCTAACGTGGTCAACCCTTTTCCTGGTCCAAGCCGGCGTGGAGGGCTGAGGAATGCCCTTGGCCGTGGGCGAGGTGGCTGGAACCGTGGTTTAGGTCTAGGTGGAGGAGGCCGTGGCCGAGGGCGTGGTCGTGGTCGTGGTCGTGGCCGTGGCCAGGGAAAAAAGAAACCTGTGGAGAAGTCTTCAGATGAACTTGACAAGGAGCTTGAAAACTACCATGCAGAAGCCATGCAAACCTGA

Protein sequence

MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVLGSVRRGPLGINARASAYSIRKASFKLSGSVKLLFCGESHCGSPSDPNRLLPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGVNGRSRRTVVLTPESGRTASSNVVNPFPGPSRRGGLRNALGRGRGGWNRGLGLGGGGRGRGRGRGRGRGRGQGKKKPVEKSSDELDKELENYHAEAMQT

Homology

[Close]

BLAST of CcUC05G094210.1 vs. NCBI nr
Match: XP_038896761.1 (THO complex subunit 4D-like [Benincasa hispida])

HSP 1 Score: 505.4 bits (1300), Expect = 3.6e-139
Identity = 274/316 (86.71%), Postives = 280/316 (88.61%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVLGSVRRGPLGINARAS 60
           MATPLDMSLEDVIKK+NREKLRARGRARRGRGAGGSFNGGRGVV+GSVRRGPLGINARAS
Sbjct: 1   MATPLDMSLEDVIKKSNREKLRARGRARRGRGAGGSFNGGRGVVVGSVRRGPLGINARAS 60

Query: 61  AYSIRKASFKLSGSVKLLFCGESHCGSPSDPNRLLPPRRMKNVQWQHDLFEDSLRASGIS 120
           AYSIRK                             PPRRMKNVQWQHDLFEDSLRASGIS
Sbjct: 61  AYSIRK-----------------------------PPRRMKNVQWQHDLFEDSLRASGIS 120

Query: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180
           GIEIGTKLYVSNLDYGV+KEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF
Sbjct: 121 GIEIGTKLYVSNLDYGVSKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180

Query: 181 AALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGVNGRSRRTVVLTPESGRTASSNV 240
           AALKRYNNVLLDG+PMKIEMLGDNAEMPVSARINVTGVNGRSRRTVVLTPESGRTASSNV
Sbjct: 181 AALKRYNNVLLDGRPMKIEMLGDNAEMPVSARINVTGVNGRSRRTVVLTPESGRTASSNV 240

Query: 241 VNPFPGPSRRGGLRNALGRGRGGWNRGLGLGGGGRGRGRGRGRGRGRGQGKKKPVEKSSD 300
           VNPFPGPS RGGLRN  GRGRGGWNRG G+GGG  G GRGRGRGRGRGQG+KKPVEKSSD
Sbjct: 241 VNPFPGPSHRGGLRNGRGRGRGGWNRGQGVGGG--GGGRGRGRGRGRGQGRKKPVEKSSD 285

Query: 301 ELDKELENYHAEAMQT 317
           ELDKELENYHAEAMQT
Sbjct: 301 ELDKELENYHAEAMQT 285

[Close]

BLAST of CcUC05G094210.1 vs. NCBI nr
Match: XP_008457020.1 (PREDICTED: THO complex subunit 4D [Cucumis melo])

HSP 1 Score: 494.6 bits (1272), Expect = 6.4e-136
Identity = 268/316 (84.81%), Postives = 274/316 (86.71%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVLGSVRRGPLGINARAS 60
           M TPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVV+GSVRRGPLGINARAS
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AYSIRKASFKLSGSVKLLFCGESHCGSPSDPNRLLPPRRMKNVQWQHDLFEDSLRASGIS 120
           AYSIRK                             PP RMKNVQWQHDLFEDSLRASGIS
Sbjct: 61  AYSIRK-----------------------------PPHRMKNVQWQHDLFEDSLRASGIS 120

Query: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180
           GI+IGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF
Sbjct: 121 GIQIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180

Query: 181 AALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGVNGRSRRTVVLTPESGRTASSNV 240
           AALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTG NGR+RRTVVLTPESGR A+ NV
Sbjct: 181 AALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGTNGRNRRTVVLTPESGRNATFNV 240

Query: 241 VNPFPGPSRRGGLRNALGRGRGGWNRGLGLGGGGRGRGRGRGRGRGRGQGKKKPVEKSSD 300
           VNPFPGPS RGGLRNA GRGRG W RG+GLGG   G GRGRGRGRGRGQG+KKPVEKSSD
Sbjct: 241 VNPFPGPSHRGGLRNARGRGRGAWTRGVGLGGS--GGGRGRGRGRGRGQGRKKPVEKSSD 285

Query: 301 ELDKELENYHAEAMQT 317
           ELDKELENYHAEAMQT
Sbjct: 301 ELDKELENYHAEAMQT 285

[Close]

BLAST of CcUC05G094210.1 vs. NCBI nr
Match: XP_004145851.1 (THO complex subunit 4D [Cucumis sativus] >KAE8650594.1 hypothetical protein Csa_011773 [Cucumis sativus])

HSP 1 Score: 490.3 bits (1261), Expect = 1.2e-134
Identity = 266/316 (84.18%), Postives = 275/316 (87.03%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVLGSVRRGPLGINARAS 60
           M TPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVV+GSVRRGPLGINARAS
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AYSIRKASFKLSGSVKLLFCGESHCGSPSDPNRLLPPRRMKNVQWQHDLFEDSLRASGIS 120
           AYSIRK                             PP RMKNVQWQHDLFEDSLRASGIS
Sbjct: 61  AYSIRK-----------------------------PPHRMKNVQWQHDLFEDSLRASGIS 120

Query: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180
           GI+IGTKLYVSNLDYGVTKEDI+ELFSEIGD+KRFAIHYDKNGRPSGSAEVVYTRRSDAF
Sbjct: 121 GIQIGTKLYVSNLDYGVTKEDIKELFSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180

Query: 181 AALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGVNGRSRRTVVLTPESGRTASSNV 240
           AALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTG NGR+RRTVVLT ESGR A+SNV
Sbjct: 181 AALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGTNGRNRRTVVLTSESGRNATSNV 240

Query: 241 VNPFPGPSRRGGLRNALGRGRGGWNRGLGLGGGGRGRGRGRGRGRGRGQGKKKPVEKSSD 300
           VN FPGPS RGGLRNA GRGRG W+RG+GLGGG  G GRGRGRGRGRGQG+KKPVEKSSD
Sbjct: 241 VNSFPGPSHRGGLRNARGRGRGAWSRGVGLGGGS-GGGRGRGRGRGRGQGRKKPVEKSSD 286

Query: 301 ELDKELENYHAEAMQT 317
           ELDKELENYHAEAMQT
Sbjct: 301 ELDKELENYHAEAMQT 286

[Close]

BLAST of CcUC05G094210.1 vs. NCBI nr
Match: XP_023527122.1 (THO complex subunit 4D [Cucurbita pepo subsp. pepo])

HSP 1 Score: 482.6 bits (1241), Expect = 2.5e-132
Identity = 267/324 (82.41%), Postives = 274/324 (84.57%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVLGSVRRGPLGINARAS 60
           MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGS+NGGR VV+GSVRRGPLGINAR S
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  AYSIRKASFKLSGSVKLLFCGESHCGSPSDPNRLLPPRRMKNVQWQHDLFEDSLRASGIS 120
           A+SI K                             PPRRMKNVQWQHDLFEDSLRASGIS
Sbjct: 61  AFSISK-----------------------------PPRRMKNVQWQHDLFEDSLRASGIS 120

Query: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180
           GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF
Sbjct: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180

Query: 181 AALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGVNGRSRRTVVLTPESGRTASSNV 240
           AALKRYNNVLLDGKPMKIEMLGDNA+ PVSARINVTGVNGRSRRTVVLT ESGRT SSN 
Sbjct: 181 AALKRYNNVLLDGKPMKIEMLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNA 240

Query: 241 VNPFPGPSRRGGLRN--ALGRGRGGWNRGL------GLGGGGRGRGRGRGRGRGRGQGKK 300
           VNPFPGPS RGGLR+    GRGRGGW+RGL      GLGGGGRGRGRG G GRGRGQG+K
Sbjct: 241 VNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGRGRGQGRK 295

Query: 301 KPVEKSSDELDKELENYHAEAMQT 317
           KPVEKSS ELDKELENYHAEAMQT
Sbjct: 301 KPVEKSSAELDKELENYHAEAMQT 295

[Close]

BLAST of CcUC05G094210.1 vs. NCBI nr
Match: XP_022935328.1 (THO complex subunit 4D-like [Cucurbita moschata] >XP_022935329.1 THO complex subunit 4D-like [Cucurbita moschata] >XP_022935330.1 THO complex subunit 4D-like [Cucurbita moschata])

HSP 1 Score: 480.7 bits (1236), Expect = 9.6e-132
Identity = 266/324 (82.10%), Postives = 274/324 (84.57%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVLGSVRRGPLGINARAS 60
           MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGS+NGGR VV+GSVRRGPLGINAR S
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  AYSIRKASFKLSGSVKLLFCGESHCGSPSDPNRLLPPRRMKNVQWQHDLFEDSLRASGIS 120
           A+SI K                             PPRRMKNVQWQHDLFEDSLRASGIS
Sbjct: 61  AFSISK-----------------------------PPRRMKNVQWQHDLFEDSLRASGIS 120

Query: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180
           GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF
Sbjct: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180

Query: 181 AALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGVNGRSRRTVVLTPESGRTASSNV 240
           AALKRYNNVLLDGKPMKIEMLGDNA+ PVSARINVTGVNGRSRRTVVLT ESGRT SS+ 
Sbjct: 181 AALKRYNNVLLDGKPMKIEMLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSHA 240

Query: 241 VNPFPGPSRRGGLRN--ALGRGRGGWNRGL------GLGGGGRGRGRGRGRGRGRGQGKK 300
           VNPFPGPS RGGLR+    GRGRGGW+RGL      GLGGGGRGRGRG G GRGRGQG+K
Sbjct: 241 VNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGRGRGQGRK 295

Query: 301 KPVEKSSDELDKELENYHAEAMQT 317
           KPVEKSS ELDKELENYHAEAMQT
Sbjct: 301 KPVEKSSAELDKELENYHAEAMQT 295

[Close]

BLAST of CcUC05G094210.1 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 8.6e-67
Identity = 169/326 (51.84%), Postives = 215/326 (65.95%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRAR-RGRGAGGSFNGGRGVVLGSVRRGPLGINARA 60
           M+  L+M+L++++K+    +   RG +R RGRG GG   GGRG   G  RRGPL +NAR 
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGG---GGRGA--GPARRGPLAVNARP 60

Query: 61  SAYSIRKASFKLSGSVKLLFCGESHCGSPSDPNRLLPPRRMKNVQWQHDLFEDSLRASGI 120
           S+++I K                             P RR++++ WQ  LFED LRA+G 
Sbjct: 61  SSFTINK-----------------------------PVRRVRSLPWQSGLFEDGLRAAGA 120

Query: 121 SGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDA 180
           SG+E+GT+L+V+NLD GVT EDIRELFSEIG+++R+AIHYDKNGRPSG+AEVVY RRSDA
Sbjct: 121 SGVEVGTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDA 180

Query: 181 FAALKRYNNVLLDGKPMKIEMLGDN--AEMPVSAR--INVTGVNGRSRRTVVLTPESGR- 240
           F ALK+YNNVLLDG+PM++E+LG N  +E P+S R  +NVTG+NGR +RTVV+    G  
Sbjct: 181 FQALKKYNNVLLDGRPMRLEILGGNNSSEAPLSGRVNVNVTGLNGRLKRTVVIQQGGGGR 240

Query: 241 ---TASSNVVNPFPGPSRRGGLRNALGRG-RGGWNRGLGLGGGGRGRGRGRGRGRGRGQG 300
                      P P  SRR  + N  G G RGG  RG G    GRG G GRGRG GRG G
Sbjct: 241 GRVRGGRGGRGPAPTVSRRLPIHNQQGGGMRGG--RG-GFRARGRGNG-GRGRGGGRGNG 287

Query: 301 KKKPVEKSSDELDKELENYHAEAMQT 317
            KKPVEKS+ +LDK+LE+YHA+AM T
Sbjct: 301 -KKPVEKSAADLDKDLESYHADAMNT 287

[Close]

BLAST of CcUC05G094210.1 vs. ExPASy Swiss-Prot
Match: Q94EH8 (THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 2.2e-62
Identity = 165/341 (48.39%), Postives = 215/341 (63.05%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRA-----RGRARR-GRGAGGS---FNGGRGVVLGSVRRG 60
           M+  L+M+L++++KK+  E+  A     +G +R+ GRG GG      GGRG   G VRRG
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGG--GPVRRG 60

Query: 61  PLGINAR-ASAYSIRKASFKLSGSVKLLFCGESHCGSPSDPNRLLPPRRMKNVQW--QHD 120
           PL +N R +S++SI K +                             RR +++ W  Q+D
Sbjct: 61  PLAVNTRPSSSFSINKLA-----------------------------RRKRSLPWQNQND 120

Query: 121 LFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGS 180
           L+E++LRA G+SG+E+GT +Y++NLD GVT EDIREL++EIG+LKR+AIHYDKNGRPSGS
Sbjct: 121 LYEETLRAVGVSGVEVGTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGS 180

Query: 181 AEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE-MPVSARINVTGVNGRSRRTVV 240
           AEVVY RRSDA  A+++YNNVLLDG+PMK+E+LG N E  PV+AR+NVTG+NGR +R+V 
Sbjct: 181 AEVVYMRRSDAIQAMRKYNNVLLDGRPMKLEILGGNTESAPVAARVNVTGLNGRMKRSV- 240

Query: 241 LTPESGRTASSNVVNPFPGPSRRGGLRNALGRGRGGWNRGLGL-----------GGGGRG 300
                           F G   RGG R   GRG G   R L L            GG RG
Sbjct: 241 ----------------FIGQGVRGG-RVGRGRGSGPSGRRLPLQQNQQGGVTAGRGGFRG 292

Query: 301 RGRGRGRGRGR---GQGKKKPVEKSSDELDKELENYHAEAM 315
           RGRG G GRG    G+G KKPVEKS+ +LDK+LE+YHAEAM
Sbjct: 301 RGRGNGGGRGNKSGGRGGKKPVEKSAADLDKDLESYHAEAM 292

[Close]

BLAST of CcUC05G094210.1 vs. ExPASy Swiss-Prot
Match: Q8L719 (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-40
Identity = 137/333 (41.14%), Postives = 178/333 (53.45%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVLGSVRRGPLGINARAS 60
           M+  LDMSL+D+I K+NR+   +RGR   G G      GG G   G  RR    + AR +
Sbjct: 1   MSGGLDMSLDDII-KSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTA 60

Query: 61  AYSIRKASFKLSGSVKLLFCGESHCGSPSDPNRLLPPRRMKNVQWQHDLF--EDSLRAS- 120
            YS                             R +  ++  +  WQ+D+F  + S+ A+ 
Sbjct: 61  PYS-----------------------------RPIQQQQAHDAMWQNDVFATDASVAAAF 120

Query: 121 ---------GISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGS 180
                    G S IE GTKLY+SNLDYGV+ EDI+ELFSE+GDLKR+ IHYD++GR  G+
Sbjct: 121 GHHQTAVVGGGSSIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGT 180

Query: 181 AEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGVNGRSRRTVVL 240
           AEVV++RR DA AA+KRYNNV LDGK MKIE++G N   P    +    +          
Sbjct: 181 AEVVFSRRGDALAAVKRYNNVQLDGKLMKIEIVGTNLSAPALPILATAQIP--------- 240

Query: 241 TPESGRTASSNVVNPFPGPSRRGGLRNALGRGRGGW---NRGLGLGGGGRGRGRG-RGRG 300
            P +G   + N    F G        N  GRGRGG+    RG G GGG    GRG RGRG
Sbjct: 241 FPTNGILGNFN--ENFNGNFNGNFNGNFRGRGRGGFMGRPRGGGFGGGNFRGGRGARGRG 291

Query: 301 RGRGQGKKKPVEK-SSDELDKELENYHAEAMQT 317
            GRG G +   E  S+++LD EL+ YH EAM+T
Sbjct: 301 -GRGSGGRGRDENVSAEDLDAELDKYHKEAMET 291

[Close]

BLAST of CcUC05G094210.1 vs. ExPASy Swiss-Prot
Match: Q8L773 (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.4e-39
Identity = 127/321 (39.56%), Postives = 167/321 (52.02%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVLGSVRRGPLGINARAS 60
           M+T LDMSL+D+I KN     ++RG A   RG G     G      + R  P   + R++
Sbjct: 1   MSTGLDMSLDDMIAKNR----KSRGGAGPARGTGSGSGPG-----PTRRNNPNRKSTRSA 60

Query: 61  AYSIRKASFKLSGSVKLLFCGESHCGSPSDPNRLLPPRRMKNVQWQHDLF----EDSLRA 120
            Y   KA                                     W HD+F    ED    
Sbjct: 61  PYQSAKA---------------------------------PESTWGHDMFSDRSEDHRSG 120

Query: 121 SGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRR 180
              +GIE GTKLY+SNLDYGV  EDI+ELF+E+G+LKR+ +H+D++GR  G+AEVVY+RR
Sbjct: 121 RSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRR 180

Query: 181 SDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGVNGRSRRTVVLTPESGRTA 240
            DA AA+K+YN+V LDGKPMKIE++G N +   +                     SGR A
Sbjct: 181 GDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAA--------------------PSGRPA 240

Query: 241 SSNVVNPFPGPSRRGGLRNALGRGRGGWNRGLGLGGGGRGRGRGRGRGRGRGQGKKKPVE 300
           + N      G   RG      G+GRGG  RG G GGGGRG G GRGR  G+G     P E
Sbjct: 241 NGN----SNGAPWRG------GQGRGGQQRGGGRGGGGRG-GGGRGRRPGKG-----PAE 243

Query: 301 K-SSDELDKELENYHAEAMQT 317
           K S+++LD +L+ YH+  M+T
Sbjct: 301 KISAEDLDADLDKYHSGDMET 243

[Close]

BLAST of CcUC05G094210.1 vs. ExPASy Swiss-Prot
Match: B5FXN8 (THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.8e-32
Identity = 116/316 (36.71%), Postives = 165/316 (52.22%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVLGSVRRGPLGINARAS 60
           MA  +DMSL+D+IK N  ++  +RG  R GRG GG+  G      G   RG +G   RA 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGASRG-GRGGRGRGGTARG------GGPGRGGVG-GGRAG 60

Query: 61  AYSIRKASFKLSGSVKLLFCGESHCGSPSDPNRLLPPRRMKNV--QWQHDLFEDSLRASG 120
              +R       G  +               NR  P  R K +  +WQHDLF+    A  
Sbjct: 61  GGPVRNRPVMARGGGR---------------NRPAPYSRPKQLPEKWQHDLFDSGFGAG- 120

Query: 121 ISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSD 180
            +G+E G KL VSNLD+GV+  DI+ELF+E G LK+ A+HYD++GR  G+A+V + R++D
Sbjct: 121 -AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKAD 180

Query: 181 AFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGVNGRSRRTVVLTPESGRTASS 240
           A  A+K+YN V LDG+PM I++        V+++I                 ++ R  + 
Sbjct: 181 ALKAMKQYNGVPLDGRPMNIQL--------VTSQI-----------------DTQRRPAQ 240

Query: 241 NVVNPFPGPSRRGGLRNALGRGRGGWNRGL--GLGGGGRGRG-RGRGRGRGRGQGKKKPV 300
           +V         RGG+           NRG+  G GGGG  RG RG  RGRGRG G+    
Sbjct: 241 SV--------NRGGMTR---------NRGVLGGFGGGGNRRGTRGGNRGRGRGAGRTSKQ 249

Query: 301 EKSSDELDKELENYHA 312
           + S++ELD +L+ Y+A
Sbjct: 301 QLSAEELDAQLDAYNA 249

[Close]

BLAST of CcUC05G094210.1 vs. ExPASy TrEMBL
Match: A0A1S3C452 (THO complex subunit 4D OS=Cucumis melo OX=3656 GN=LOC103496802 PE=4 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 3.1e-136
Identity = 268/316 (84.81%), Postives = 274/316 (86.71%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVLGSVRRGPLGINARAS 60
           M TPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVV+GSVRRGPLGINARAS
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AYSIRKASFKLSGSVKLLFCGESHCGSPSDPNRLLPPRRMKNVQWQHDLFEDSLRASGIS 120
           AYSIRK                             PP RMKNVQWQHDLFEDSLRASGIS
Sbjct: 61  AYSIRK-----------------------------PPHRMKNVQWQHDLFEDSLRASGIS 120

Query: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180
           GI+IGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF
Sbjct: 121 GIQIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180

Query: 181 AALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGVNGRSRRTVVLTPESGRTASSNV 240
           AALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTG NGR+RRTVVLTPESGR A+ NV
Sbjct: 181 AALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGTNGRNRRTVVLTPESGRNATFNV 240

Query: 241 VNPFPGPSRRGGLRNALGRGRGGWNRGLGLGGGGRGRGRGRGRGRGRGQGKKKPVEKSSD 300
           VNPFPGPS RGGLRNA GRGRG W RG+GLGG   G GRGRGRGRGRGQG+KKPVEKSSD
Sbjct: 241 VNPFPGPSHRGGLRNARGRGRGAWTRGVGLGGS--GGGRGRGRGRGRGQGRKKPVEKSSD 285

Query: 301 ELDKELENYHAEAMQT 317
           ELDKELENYHAEAMQT
Sbjct: 301 ELDKELENYHAEAMQT 285

[Close]

BLAST of CcUC05G094210.1 vs. ExPASy TrEMBL
Match: A0A6J1FAB9 (THO complex subunit 4D-like OS=Cucurbita moschata OX=3662 GN=LOC111442248 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 4.6e-132
Identity = 266/324 (82.10%), Postives = 274/324 (84.57%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVLGSVRRGPLGINARAS 60
           MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGS+NGGR VV+GSVRRGPLGINAR S
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  AYSIRKASFKLSGSVKLLFCGESHCGSPSDPNRLLPPRRMKNVQWQHDLFEDSLRASGIS 120
           A+SI K                             PPRRMKNVQWQHDLFEDSLRASGIS
Sbjct: 61  AFSISK-----------------------------PPRRMKNVQWQHDLFEDSLRASGIS 120

Query: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180
           GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF
Sbjct: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180

Query: 181 AALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGVNGRSRRTVVLTPESGRTASSNV 240
           AALKRYNNVLLDGKPMKIEMLGDNA+ PVSARINVTGVNGRSRRTVVLT ESGRT SS+ 
Sbjct: 181 AALKRYNNVLLDGKPMKIEMLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSHA 240

Query: 241 VNPFPGPSRRGGLRN--ALGRGRGGWNRGL------GLGGGGRGRGRGRGRGRGRGQGKK 300
           VNPFPGPS RGGLR+    GRGRGGW+RGL      GLGGGGRGRGRG G GRGRGQG+K
Sbjct: 241 VNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSGSGRGRGQGRK 295

Query: 301 KPVEKSSDELDKELENYHAEAMQT 317
           KPVEKSS ELDKELENYHAEAMQT
Sbjct: 301 KPVEKSSAELDKELENYHAEAMQT 295

[Close]

BLAST of CcUC05G094210.1 vs. ExPASy TrEMBL
Match: A0A6J1J564 (THO complex subunit 4D-like OS=Cucurbita maxima OX=3661 GN=LOC111481464 PE=4 SV=1)

HSP 1 Score: 478.0 bits (1229), Expect = 3.0e-131
Identity = 267/334 (79.94%), Postives = 274/334 (82.04%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVLGSVRRGPLGINARAS 60
           MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGS+NGGR VV+GSVRRGPLGINAR S
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  AYSIRKASFKLSGSVKLLFCGESHCGSPSDPNRLLPPRRMKNVQWQHDLFEDSLRASGIS 120
           A+SI K                             PPRRMKNVQWQHDLFEDSLRASGIS
Sbjct: 61  AFSISK-----------------------------PPRRMKNVQWQHDLFEDSLRASGIS 120

Query: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180
           GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF
Sbjct: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180

Query: 181 AALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGVNGRSRRTVVLTPESGRTASSNV 240
           AALKRYNNVLLDGKPMKIEMLGDNA+ PVSARINVTGVNGRSRRTVVLT ESGRT SSN 
Sbjct: 181 AALKRYNNVLLDGKPMKIEMLGDNADTPVSARINVTGVNGRSRRTVVLTSESGRTGSSNA 240

Query: 241 VNPFPGPSRRGGLRNALGRGRGGWNRGLGLGG------------GGRGRGRGR------G 300
           VNPFPGPS RGGLR+  GRGRGGW+RGLG GG            GGRGRGRGR      G
Sbjct: 241 VNPFPGPSHRGGLRSGRGRGRGGWSRGLGGGGGRGLGGGGGRGLGGRGRGRGRGSGSGSG 300

Query: 301 RGRGRGQGKKKPVEKSSDELDKELENYHAEAMQT 317
            GRGRGQG+KKPVEKSS ELDKELENYHAEAMQT
Sbjct: 301 SGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT 305

[Close]

BLAST of CcUC05G094210.1 vs. ExPASy TrEMBL
Match: A0A6J1CP51 (THO complex subunit 4D-like OS=Momordica charantia OX=3673 GN=LOC111013262 PE=4 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 1.6e-124
Identity = 256/316 (81.01%), Postives = 264/316 (83.54%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVLGSVRRGPLGINARAS 60
           MATPLDMSLED+IKKNNREKLRARGRARRGRGAGGSFNGGR VV+GS+RRGPL IN R S
Sbjct: 1   MATPLDMSLEDMIKKNNREKLRARGRARRGRGAGGSFNGGR-VVIGSIRRGPLSINTRPS 60

Query: 61  AYSIRKASFKLSGSVKLLFCGESHCGSPSDPNRLLPPRRMKNVQWQHDLFEDSLRASGIS 120
           A+SI K                             PPRRMKNVQWQHDLFEDSLRASGIS
Sbjct: 61  AFSISK-----------------------------PPRRMKNVQWQHDLFEDSLRASGIS 120

Query: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180
           GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF
Sbjct: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180

Query: 181 AALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGVNGRSRRTVVLTPESGRTASSNV 240
           AALKRYNNVLLDGKPMKIE+LGDNAEMPVSARINVTG+NGRSRRTVVLT ESGRT SS V
Sbjct: 181 AALKRYNNVLLDGKPMKIEILGDNAEMPVSARINVTGLNGRSRRTVVLTSESGRTDSSTV 240

Query: 241 VNPFPGPSRRGGLRNALGRGRGGWNRGLGLGGGGRGRGRGRGRGRGRGQGKKKPVEKSSD 300
           VN FPGPS RG LR   GRGRGGW+RG G  GGGRGRGRGRGRG GR    KK VEKSSD
Sbjct: 241 VNHFPGPSNRGALRGR-GRGRGGWSRGQGQVGGGRGRGRGRGRGLGR----KKTVEKSSD 281

Query: 301 ELDKELENYHAEAMQT 317
           ELDK+LENYHAEAMQT
Sbjct: 301 ELDKDLENYHAEAMQT 281

[Close]

BLAST of CcUC05G094210.1 vs. ExPASy TrEMBL
Match: A0A5D3BPA9 (THO complex subunit 4D OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002100 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.7e-118
Identity = 225/237 (94.94%), Postives = 229/237 (96.62%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVLGSVRRGPLGINARAS 60
           M TPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVV+GSVRRGPLGINARAS
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AYSIRKASFKLSGSVKLLFCGESHCGSPSDPNRLLPPRRMKNVQWQHDLFEDSLRASGIS 120
           AYSIRKASFKLSGSV +LFCGESHCGSPSDPN LLPP RMKNVQWQHDLFEDSLRASGIS
Sbjct: 61  AYSIRKASFKLSGSV-MLFCGESHCGSPSDPNCLLPPHRMKNVQWQHDLFEDSLRASGIS 120

Query: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180
           GI+IGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF
Sbjct: 121 GIQIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180

Query: 181 AALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGVNGRSRRTVVLTPESGRTAS 238
           AALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTG NGR+RRTVVLT  SG TAS
Sbjct: 181 AALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGTNGRNRRTVVLTYVSG-TAS 235

[Close]

BLAST of CcUC05G094210.1 vs. TAIR 10
Match: AT5G37720.2 (ALWAYS EARLY 4 )

HSP 1 Score: 260.0 bits (663), Expect = 2.5e-69
Identity = 170/322 (52.80%), Postives = 216/322 (67.08%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRAR-RGRGAGGSFNGGRGVVLGSVRRGPLGINARA 60
           M+  L+M+L++++K+    +   RG +R RGRG GG   GGRG   G  RRGPL +NAR 
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGG---GGRGA--GPARRGPLAVNARP 60

Query: 61  SAYSIRKASFKLSGSVKLLFCGESHCGSPSDPNRLLPPRRMKNVQWQHDLFEDSLRASGI 120
           S+++I K                             P RR++++ WQ  LFED LRA+G 
Sbjct: 61  SSFTINK-----------------------------PVRRVRSLPWQSGLFEDGLRAAGA 120

Query: 121 SGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDA 180
           SG+E+GT+L+V+NLD GVT EDIRELFSEIG+++R+AIHYDKNGRPSG+AEVVY RRSDA
Sbjct: 121 SGVEVGTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDA 180

Query: 181 FAALKRYNNVLLDGKPMKIEMLGDN--AEMPVSAR--INVTGVNGRSRRTVVLTPESGRT 240
           F ALK+YNNVLLDG+PM++E+LG N  +E P+S R  +NVTG+NGR +RTVV+    GR 
Sbjct: 181 FQALKKYNNVLLDGRPMRLEILGGNNSSEAPLSGRVNVNVTGLNGRLKRTVVIQVRGGRG 240

Query: 241 ASSNVVNPFPGPSRRGGLRNALGRG-RGGWNRGLGLGGGGRGRGRGRGRGRGRGQGKKKP 300
                  P P  SRR  + N  G G RGG  RG G    GRG G GRGRG GRG G KKP
Sbjct: 241 GR----GPAPTVSRRLPIHNQQGGGMRGG--RG-GFRARGRGNG-GRGRGGGRGNG-KKP 279

Query: 301 VEKSSDELDKELENYHAEAMQT 317
           VEKS+ +LDK+LE+YHA+AM T
Sbjct: 301 VEKSAADLDKDLESYHADAMNT 279

[Close]

BLAST of CcUC05G094210.1 vs. TAIR 10
Match: AT5G37720.1 (ALWAYS EARLY 4 )

HSP 1 Score: 255.4 bits (651), Expect = 6.1e-68
Identity = 169/326 (51.84%), Postives = 215/326 (65.95%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRAR-RGRGAGGSFNGGRGVVLGSVRRGPLGINARA 60
           M+  L+M+L++++K+    +   RG +R RGRG GG   GGRG   G  RRGPL +NAR 
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGG---GGRGA--GPARRGPLAVNARP 60

Query: 61  SAYSIRKASFKLSGSVKLLFCGESHCGSPSDPNRLLPPRRMKNVQWQHDLFEDSLRASGI 120
           S+++I K                             P RR++++ WQ  LFED LRA+G 
Sbjct: 61  SSFTINK-----------------------------PVRRVRSLPWQSGLFEDGLRAAGA 120

Query: 121 SGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDA 180
           SG+E+GT+L+V+NLD GVT EDIRELFSEIG+++R+AIHYDKNGRPSG+AEVVY RRSDA
Sbjct: 121 SGVEVGTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDA 180

Query: 181 FAALKRYNNVLLDGKPMKIEMLGDN--AEMPVSAR--INVTGVNGRSRRTVVLTPESGR- 240
           F ALK+YNNVLLDG+PM++E+LG N  +E P+S R  +NVTG+NGR +RTVV+    G  
Sbjct: 181 FQALKKYNNVLLDGRPMRLEILGGNNSSEAPLSGRVNVNVTGLNGRLKRTVVIQQGGGGR 240

Query: 241 ---TASSNVVNPFPGPSRRGGLRNALGRG-RGGWNRGLGLGGGGRGRGRGRGRGRGRGQG 300
                      P P  SRR  + N  G G RGG  RG G    GRG G GRGRG GRG G
Sbjct: 241 GRVRGGRGGRGPAPTVSRRLPIHNQQGGGMRGG--RG-GFRARGRGNG-GRGRGGGRGNG 287

Query: 301 KKKPVEKSSDELDKELENYHAEAMQT 317
            KKPVEKS+ +LDK+LE+YHA+AM T
Sbjct: 301 -KKPVEKSAADLDKDLESYHADAMNT 287

[Close]

BLAST of CcUC05G094210.1 vs. TAIR 10
Match: AT1G66260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 240.7 bits (613), Expect = 1.6e-63
Identity = 165/341 (48.39%), Postives = 215/341 (63.05%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRA-----RGRARR-GRGAGGS---FNGGRGVVLGSVRRG 60
           M+  L+M+L++++KK+  E+  A     +G +R+ GRG GG      GGRG   G VRRG
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGG--GPVRRG 60

Query: 61  PLGINAR-ASAYSIRKASFKLSGSVKLLFCGESHCGSPSDPNRLLPPRRMKNVQW--QHD 120
           PL +N R +S++SI K +                             RR +++ W  Q+D
Sbjct: 61  PLAVNTRPSSSFSINKLA-----------------------------RRKRSLPWQNQND 120

Query: 121 LFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGS 180
           L+E++LRA G+SG+E+GT +Y++NLD GVT EDIREL++EIG+LKR+AIHYDKNGRPSGS
Sbjct: 121 LYEETLRAVGVSGVEVGTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGS 180

Query: 181 AEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE-MPVSARINVTGVNGRSRRTVV 240
           AEVVY RRSDA  A+++YNNVLLDG+PMK+E+LG N E  PV+AR+NVTG+NGR +R+V 
Sbjct: 181 AEVVYMRRSDAIQAMRKYNNVLLDGRPMKLEILGGNTESAPVAARVNVTGLNGRMKRSV- 240

Query: 241 LTPESGRTASSNVVNPFPGPSRRGGLRNALGRGRGGWNRGLGL-----------GGGGRG 300
                           F G   RGG R   GRG G   R L L            GG RG
Sbjct: 241 ----------------FIGQGVRGG-RVGRGRGSGPSGRRLPLQQNQQGGVTAGRGGFRG 292

Query: 301 RGRGRGRGRGR---GQGKKKPVEKSSDELDKELENYHAEAM 315
           RGRG G GRG    G+G KKPVEKS+ +LDK+LE+YHAEAM
Sbjct: 301 RGRGNGGGRGNKSGGRGGKKPVEKSAADLDKDLESYHAEAM 292

[Close]

BLAST of CcUC05G094210.1 vs. TAIR 10
Match: AT1G66260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 240.7 bits (613), Expect = 1.6e-63
Identity = 165/341 (48.39%), Postives = 215/341 (63.05%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRA-----RGRARR-GRGAGGS---FNGGRGVVLGSVRRG 60
           M+  L+M+L++++KK+  E+  A     +G +R+ GRG GG      GGRG   G VRRG
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGG--GPVRRG 60

Query: 61  PLGINAR-ASAYSIRKASFKLSGSVKLLFCGESHCGSPSDPNRLLPPRRMKNVQW--QHD 120
           PL +N R +S++SI K +                             RR +++ W  Q+D
Sbjct: 61  PLAVNTRPSSSFSINKLA-----------------------------RRKRSLPWQNQND 120

Query: 121 LFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGS 180
           L+E++LRA G+SG+E+GT +Y++NLD GVT EDIREL++EIG+LKR+AIHYDKNGRPSGS
Sbjct: 121 LYEETLRAVGVSGVEVGTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGS 180

Query: 181 AEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE-MPVSARINVTGVNGRSRRTVV 240
           AEVVY RRSDA  A+++YNNVLLDG+PMK+E+LG N E  PV+AR+NVTG+NGR +R+V 
Sbjct: 181 AEVVYMRRSDAIQAMRKYNNVLLDGRPMKLEILGGNTESAPVAARVNVTGLNGRMKRSV- 240

Query: 241 LTPESGRTASSNVVNPFPGPSRRGGLRNALGRGRGGWNRGLGL-----------GGGGRG 300
                           F G   RGG R   GRG G   R L L            GG RG
Sbjct: 241 ----------------FIGQGVRGG-RVGRGRGSGPSGRRLPLQQNQQGGVTAGRGGFRG 292

Query: 301 RGRGRGRGRGR---GQGKKKPVEKSSDELDKELENYHAEAM 315
           RGRG G GRG    G+G KKPVEKS+ +LDK+LE+YHAEAM
Sbjct: 301 RGRGNGGGRGNKSGGRGGKKPVEKSAADLDKDLESYHAEAM 292

[Close]

BLAST of CcUC05G094210.1 vs. TAIR 10
Match: AT5G02530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 168.3 bits (425), Expect = 9.8e-42
Identity = 137/333 (41.14%), Postives = 178/333 (53.45%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVLGSVRRGPLGINARAS 60
           M+  LDMSL+D+I K+NR+   +RGR   G G      GG G   G  RR    + AR +
Sbjct: 1   MSGGLDMSLDDII-KSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTA 60

Query: 61  AYSIRKASFKLSGSVKLLFCGESHCGSPSDPNRLLPPRRMKNVQWQHDLF--EDSLRAS- 120
            YS                             R +  ++  +  WQ+D+F  + S+ A+ 
Sbjct: 61  PYS-----------------------------RPIQQQQAHDAMWQNDVFATDASVAAAF 120

Query: 121 ---------GISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGS 180
                    G S IE GTKLY+SNLDYGV+ EDI+ELFSE+GDLKR+ IHYD++GR  G+
Sbjct: 121 GHHQTAVVGGGSSIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGT 180

Query: 181 AEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGVNGRSRRTVVL 240
           AEVV++RR DA AA+KRYNNV LDGK MKIE++G N   P    +    +          
Sbjct: 181 AEVVFSRRGDALAAVKRYNNVQLDGKLMKIEIVGTNLSAPALPILATAQIP--------- 240

Query: 241 TPESGRTASSNVVNPFPGPSRRGGLRNALGRGRGGW---NRGLGLGGGGRGRGRG-RGRG 300
            P +G   + N    F G        N  GRGRGG+    RG G GGG    GRG RGRG
Sbjct: 241 FPTNGILGNFN--ENFNGNFNGNFNGNFRGRGRGGFMGRPRGGGFGGGNFRGGRGARGRG 291

Query: 301 RGRGQGKKKPVEK-SSDELDKELENYHAEAMQT 317
            GRG G +   E  S+++LD EL+ YH EAM+T
Sbjct: 301 -GRGSGGRGRDENVSAEDLDAELDKYHKEAMET 291

The following BLAST results are available for this feature:

BLAST of CcUC05G094210.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896761.1	3.6e-139	86.71	THO complex subunit 4D-like [Benincasa hispida]	[more]
XP_008457020.1	6.4e-136	84.81	PREDICTED: THO complex subunit 4D [Cucumis melo]	[more]
XP_004145851.1	1.2e-134	84.18	THO complex subunit 4D [Cucumis sativus] >KAE8650594.1 hypothetical protein Csa_...	[more]
XP_023527122.1	2.5e-132	82.41	THO complex subunit 4D [Cucurbita pepo subsp. pepo]	[more]
XP_022935328.1	9.6e-132	82.10	THO complex subunit 4D-like [Cucurbita moschata] >XP_022935329.1 THO complex sub...	[more]

BLAST of CcUC05G094210.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQ72	8.6e-67	51.84	THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1	[more]
Q94EH8	2.2e-62	48.39	THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1	[more]
Q8L719	1.4e-40	41.14	THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1	[more]
Q8L773	4.4e-39	39.56	THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1	[more]
B5FXN8	1.8e-32	36.71	THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1	[more]

BLAST of CcUC05G094210.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C452	3.1e-136	84.81	THO complex subunit 4D OS=Cucumis melo OX=3656 GN=LOC103496802 PE=4 SV=1	[more]
A0A6J1FAB9	4.6e-132	82.10	THO complex subunit 4D-like OS=Cucurbita moschata OX=3662 GN=LOC111442248 PE=4 S...	[more]
A0A6J1J564	3.0e-131	79.94	THO complex subunit 4D-like OS=Cucurbita maxima OX=3661 GN=LOC111481464 PE=4 SV=...	[more]
A0A6J1CP51	1.6e-124	81.01	THO complex subunit 4D-like OS=Momordica charantia OX=3673 GN=LOC111013262 PE=4 ...	[more]
A0A5D3BPA9	1.7e-118	94.94	THO complex subunit 4D OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4...	[more]

BLAST of CcUC05G094210.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G37720.2	2.5e-69	52.80	ALWAYS EARLY 4	[more]
AT5G37720.1	6.1e-68	51.84	ALWAYS EARLY 4	[more]
AT1G66260.1	1.6e-63	48.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G66260.2	1.6e-63	48.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	9.8e-42	41.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 127..199 e-value: 8.3E-19 score: 78.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 128..196 e-value: 1.1E-14 score: 54.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 126..203 score: 15.203922
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 245..316 e-value: 2.2E-10 score: 50.5
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 258..311 e-value: 2.5E-9 score: 37.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 123..202 e-value: 1.6E-21 score: 78.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 289..310
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 232..316
None	No IPR available	PANTHER	PTHR19965:SF33	THO COMPLEX SUBUNIT 4C	coord: 1..316
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..316
None	No IPR available	CDD	cd12680	RRM_THOC4	coord: 126..200 e-value: 8.23875E-42 score: 137.771
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 90..200

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC05G094210	CcUC05G094210	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G094210.1-exon	CcUC05G094210.1-exon-CicolChr05:13476577..13477182	exon
CcUC05G094210.1-exon	CcUC05G094210.1-exon-CicolChr05:13478425..13478475	exon
CcUC05G094210.1-exon	CcUC05G094210.1-exon-CicolChr05:13484459..13484646	exon
CcUC05G094210.1-exon	CcUC05G094210.1-exon-CicolChr05:13485375..13485443	exon
CcUC05G094210.1-exon	CcUC05G094210.1-exon-CicolChr05:13485533..13485676	exon
CcUC05G094210.1-exon	CcUC05G094210.1-exon-CicolChr05:13485833..13485905	exon
CcUC05G094210.1-exon	CcUC05G094210.1-exon-CicolChr05:13485998..13486209	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G094210.1-three_prime_utr	CcUC05G094210.1-three_prime_utr-CicolChr05:13476577..13476968	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G094210.1-cds	CcUC05G094210.1-cds-CicolChr05:13476969..13477182	CDS
CcUC05G094210.1-cds	CcUC05G094210.1-cds-CicolChr05:13478425..13478475	CDS
CcUC05G094210.1-cds	CcUC05G094210.1-cds-CicolChr05:13484459..13484646	CDS
CcUC05G094210.1-cds	CcUC05G094210.1-cds-CicolChr05:13485375..13485443	CDS
CcUC05G094210.1-cds	CcUC05G094210.1-cds-CicolChr05:13485533..13485676	CDS
CcUC05G094210.1-cds	CcUC05G094210.1-cds-CicolChr05:13485833..13485905	CDS
CcUC05G094210.1-cds	CcUC05G094210.1-cds-CicolChr05:13485998..13486209	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC05G094210.1	CcUC05G094210.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding