CcUC04G067570.1 (mRNA) Watermelon (PI 537277) v1

Overview
NameCcUC04G067570.1
TypemRNA
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr04: 24307473 .. 24309242 (-)
Sequence length423
RNA-Seq ExpressionCcUC04G067570.1
SyntenyCcUC04G067570.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTATGTGACTGAGATCTACCAGCTCCCTGATTAATTGAGGCAGTCCTGTCTTAAGTTTATACAACGTTCAATTCTGTATGTTATTTTTTATTCTTTTCATTTGGCAATTAGTAGTTATTCTTTATAATTTGTTTGGTTCCTTTGGCTTCAATAGTTCACCTGAAATAAAAATTCCACCACATGATGACATTAATAACAGAAAATAACATGAAATGACAAATACAAATGAAATTGGATATTCATTGTAAATCTACTATGTAGGTATGAGTTCTTCCTTGACTTGACTCTAGTATATTGACTTGACAAGTATGTAGAATATTATATATTCTTTCTAGCAATTGAATGGATCATCAGAAGAAGAATTAGGCAAAAAAAATTAGGATACATTTTTGGAAAAATAAAACTTCCTTCCAAGATAAGCAAATGAAAGGCTTTCATAAGAATCCCCATAGAATCAAAATACCCACAACCGTAACTGTTCTACAGGAAAAAAGAATGAAAGACTAGCTAGGCTCCAACAAATTTGTTTATCAAGAGAATGAGATTGGCTCGATCTCTGAAGATCAAATACCAAAACAAAGTCATGATCAATGTAACTATATAGTGTGTATTCTATTCTAACAACTACTGATGATAATAATGTAGTGCTCAACCTATCGTCTTTACGAGTGCAACCACAACCTGTCGTGCAGTCGTTCTTCCCCAGCACCAAACATCTCATCTACTCTTTCACCGTCGCGGTAAAATTGAAATGTCGGAGTGTAACGGATGTGTTGAGTAGTTTCTGGACATTCATCAATGTCTGCATAGATGAAAGAAATCTTTGGAAAATTGTTACTCAGCCGACAGAATGTTGGAAGAATCTGACTGCACACACGACACCTGAAACCAACAAGGAACCTAATAAGCCCTGCAGGTTCTAATATATATACATATATCAACAAACCAATCCAAGAGATAATTTTTTAACATCAGATTCTAGCAATAACCTCCCTGAAATGGAACAAAGAGTTTTGTTGGTAAGTTTTAACATTAAGCCCACCATTTTTTTTAATATCTATGTCTGGCCGGTTTACGCAAATCTCAACTAATTTCACGAGACAAACTACTTAACTTCGACAACATTTGAGCGTCAAGAAAACTTGTAAAATATTAAATTCTAGATAGGTGACCACCATAGATTGAATCCATTCCCTCTTAGCCAACATTAATCCCACAATTTAAGTCATTTTTCTAGTCTAACAATGCAGGTTGGACCAAATTTTACAACTCCCCATTATTGAAACTGTTGGTAAGAACAATGACGAATGGTCAAATAAATTTGAAGCAAGACACATCACCTATGATGAGACTTGGGAGAGAGAGAGACCGACTATTTCTTATTCTAGTATTATGTCCTCTTTCTTAATCTAGTATTACGCCATCTTTAACTTCCTTTTTCTACGAGTCTTTCAACATTTCTTATACAAGTAAAACCTCAAACACTTCGTATTCTATCCTCTAAAGAAAAGTTTGGACGTACCAAGATGCACCATAATTGATAACTGCCTGCAGAGTAATTGAATAATGAAAATCAAACAATCAAGTACCCAAGAACTTCGAAACTAGGGAAATGGGAAACAAAATTTGATGGGGATTATAAGGAAGCTTACAGTGGTTTTAGAGGACTTGATTTGAAGAAGAACATCCTTGAAATCTTGATCGCTAGAAGCACTCTTCAAGTTACCATGGCGATTGACTGGAAGACACAAACCAGCGCCTTCTAG

mRNA sequence

ATGCCTATTGTGTATTCTATTCTAACAACTACTGATGATAATAATGTAGTGCTCAACCTATCGTCTTTACGAGTGCAACCACAACCTGTCGTGCAGTCGTTCTTCCCCAGCACCAAACATCTCATCTACTCTTTCACCGTCGCGGTAAAATTGAAATGTCGGAGTGTAACGGATGTGTTGAGTAGTTTCTGGACATTCATCAATGTCTGCATAGATGAAAGAAATCTTTGGAAAATTGTTACTCAGCCGACAGAATGTTGGAAGAATCTGACTGCACACACGACACCTGAAACCAACAAGGAACCTAATAAGCCCTGCAGAGGACTTGATTTGAAGAAGAACATCCTTGAAATCTTGATCGCTAGAAGCACTCTTCAAGTTACCATGGCGATTGACTGGAAGACACAAACCAGCGCCTTCTAG

Coding sequence (CDS)

ATGCCTATTGTGTATTCTATTCTAACAACTACTGATGATAATAATGTAGTGCTCAACCTATCGTCTTTACGAGTGCAACCACAACCTGTCGTGCAGTCGTTCTTCCCCAGCACCAAACATCTCATCTACTCTTTCACCGTCGCGGTAAAATTGAAATGTCGGAGTGTAACGGATGTGTTGAGTAGTTTCTGGACATTCATCAATGTCTGCATAGATGAAAGAAATCTTTGGAAAATTGTTACTCAGCCGACAGAATGTTGGAAGAATCTGACTGCACACACGACACCTGAAACCAACAAGGAACCTAATAAGCCCTGCAGAGGACTTGATTTGAAGAAGAACATCCTTGAAATCTTGATCGCTAGAAGCACTCTTCAAGTTACCATGGCGATTGACTGGAAGACACAAACCAGCGCCTTCTAG

Protein sequence

MPIVYSILTTTDDNNVVLNLSSLRVQPQPVVQSFFPSTKHLIYSFTVAVKLKCRSVTDVLSSFWTFINVCIDERNLWKIVTQPTECWKNLTAHTTPETNKEPNKPCRGLDLKKNILEILIARSTLQVTMAIDWKTQTSAF
Homology
[Close]
BLAST of CcUC04G067570.1 vs. ExPASy TrEMBL
Match: A0A0A9NLH2 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 0 

Query: 31 VQSFFPSTKHLIYSFTVAVKLKCRSVTDVLSSFWTFINVCIDERNLWKIVTQPTECWKNL 90
          +QS F  TKHLI  F ++VK++   V  VL  FWTFIN+ IDE  + + + +  E WK+L
Sbjct: 1  MQSLFSCTKHLINPFAISVKMEGWCVAYVLCCFWTFINIGIDEGQILEFIAELAEGWKDL 60

Query: 91 TAHTTP 97
          TA+T P
Sbjct: 61 TANTAP 66

The following BLAST results are available for this feature:
BLAST of CcUC04G067570.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC04G067570.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC04G067570.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A9NLH22.7e-0746.97Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
BLAST of CcUC04G067570.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CcUC04G067570CcUC04G067570gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC04G067570.1-exonCcUC04G067570.1-exon-CicolChr04:24307473..24307575exon
CcUC04G067570.1-exonCcUC04G067570.1-exon-CicolChr04:24308323..24308634exon
CcUC04G067570.1-exonCcUC04G067570.1-exon-CicolChr04:24309235..24309242exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC04G067570.1-cdsCcUC04G067570.1-cds-CicolChr04:24307473..24307575CDS
CcUC04G067570.1-cdsCcUC04G067570.1-cds-CicolChr04:24308323..24308634CDS
CcUC04G067570.1-cdsCcUC04G067570.1-cds-CicolChr04:24309235..24309242CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CcUC04G067570.1CcUC04G067570.1-proteinpolypeptide