CcUC04G063510.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC04G063510.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr04: 19309612 .. 19310158 (+)
Sequence length	207
RNA-Seq Expression	CcUC04G063510.1
Synteny	CcUC04G063510.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGTCCCAATGGCATGGTCATTGCCTTTATCAAAATAAGAAATGGTGAGTATAAAAATACCTAGTACCCCACTACTCTTGACTTTATTTGGTTGTTGCCAATTGTGATTTTGGTTTTAGTTGAAAATTTGGAGCATTTGTAGCTATTGTTTACCAATGTTAAAAGGCGATTTTGGTGATTTTGGTAAATATTTAAGATTATAAACTTTTCCAAGGAATGCTTCAATTGGTTAATGGTGCTGTGGATTTGAGTTTTTAATCCTCAATCTTGGTGTTGTGCTCAGGATCGTATTTTTGGAGAGATTGGAAGTGATTTTTGAATCAAACCACACCAGGTCAGGTTACCCAAAAATAACCAACCTTACCCAAACTTCTGACAACAGCGCCGGGGCTGGCGGCAACGACGCACGAACTGGCGGAAAAGTAGTTGAAACGAACACCCACCAGACGGAGATCGACGCTGACAGCGACGGATGGCTGTGGTGTGATAGATGGCGGACGGCTGAGGAAGACAAGGCTGCCGGTGTGGATGAAGCACAGTAG

mRNA sequence

ATGAGTTACCCAAAAATAACCAACCTTACCCAAACTTCTGACAACAGCGCCGGGGCTGGCGGCAACGACGCACGAACTGGCGGAAAAGTAGTTGAAACGAACACCCACCAGACGGAGATCGACGCTGACAGCGACGGATGGCTGTGGTGTGATAGATGGCGGACGGCTGAGGAAGACAAGGCTGCCGGTGTGGATGAAGCACAGTAG

Coding sequence (CDS)

ATGAGTTACCCAAAAATAACCAACCTTACCCAAACTTCTGACAACAGCGCCGGGGCTGGCGGCAACGACGCACGAACTGGCGGAAAAGTAGTTGAAACGAACACCCACCAGACGGAGATCGACGCTGACAGCGACGGATGGCTGTGGTGTGATAGATGGCGGACGGCTGAGGAAGACAAGGCTGCCGGTGTGGATGAAGCACAGTAG

Protein sequence

MSYPKITNLTQTSDNSAGAGGNDARTGGKVVETNTHQTEIDADSDGWLWCDRWRTAEEDKAAGVDEAQ

Homology

The following BLAST results are available for this feature:

BLAST of CcUC04G063510.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC04G063510.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC04G063510.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC04G063510.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC04G063510	CcUC04G063510	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC04G063510.1-exon	CcUC04G063510.1-exon-CicolChr04:19309612..19309615	exon
CcUC04G063510.1-exon	CcUC04G063510.1-exon-CicolChr04:19309956..19310158	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC04G063510.1-cds	CcUC04G063510.1-cds-CicolChr04:19309612..19309615	CDS
CcUC04G063510.1-cds	CcUC04G063510.1-cds-CicolChr04:19309956..19310158	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC04G063510.1	CcUC04G063510.1-protein	polypeptide