CcUC03G051750.1 (mRNA) Watermelon (PI 537277) v1

Overview
NameCcUC03G051750.1
TypemRNA
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr03: 12653211 .. 12656460 (-)
Sequence length656
RNA-Seq ExpressionCcUC03G051750.1
SyntenyCcUC03G051750.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATAAGAGTTATTTGGTCGAAAAAATTTACATTTCAAATAACTAGAGAGTCCTTCGATCCAACCCAACTCAACTCACCAATGCCCCTATTCTCCACAGTTCACACTCCCTATGCAACGGTTGCTTAGCTCTTCAATCTTGAACTTCACCCAGCCGATCGGCAGCTCCACCTCTACGACTGCAGCAGGAACAGCAGAGTCGCATACCCTCTCCACGGTACCCCTATCTCTTCCCGCACCAGAAGCTTGATTTTTGCTTCACCTCTCATTTTCAATTAATCAATTTCTAATTTCATTAAAGATATAGATTTTTGGGGATTCATATTTAGGTGACGCTTAAATTAATTTATTAGTTTTAAAAAAGTATGTTAGTTTCGAAAAGTGAAAAGAAAATTTTCTTTCTTATTTATTTAAGGATGTGTTTGCTATTGAGGAAATTTTTATGGCCATAGATCTCCTTGCATTTTGGGCTGGGATAAAGAAAAACGAACTAGGTTTAATCGAATCAAATCCACCTGAACCGAAAATCAGGTAGTTCGGTTCAAAATTCAAAACCGGGAAGCTTCAATTTTGGTTGATTCCAAAGATATTGAAAATTGACATGTTCGGTTCAGTAACTAATTTTGCTCAAAGTTTGACCGTACCAAACTGCAAACATCCCCACTCATGCATAGCAGCCCCATACAGTCAATATACAAGTGAAAAGACCAAAAATTGAAATTAGTATTTTAAATAAGAAAATTATTATAAATAGAAAAAATATAAAACTATTCATATATACAGAAAAATTGTTATAAACTGTGACGGATTTTTATTGCTAATATAGTTAAGTGAAATTTTTTATATTTGTAAATAGTTTGAATCATTTTACTTTATTTAGAAACAGTCCTTTTAAAGATAATAATAATTTTTCTTTGAAAACATTTTTAATATGCTACACAACTAATTATTATAATTTTTTAATAGAAAAAATTCTCGGTAATTAATTCCTTTAAAGCTTGTTCAAATCCAACAGACTTGGAAATCTGAATAGCAATGCGTGGAGAGTTTAAAATTGAAGGTGAAGTTGAGCAGAGGCAAAAAGCCATTTCACACCTCTGTCTCTACCATTAACAAAGTCAGTTTCATCTTCCTGTCAATTTCAGATAAGTTGTGGTTCTTGTCCATGGTTTGATTATGTCACTTGTGGTTACGAGTTGGAGTATGTTGTTGGAAGCATTCTTGTGGATGTTTAATAGGTTGGTGGGGTTTGATCATGGGATGTGCTCGAATTGGATTAAATTGGTTAGCTTTCTCATTTTTTGAGGATAAGCTTGAGTTGGTTAATGAAATAGGTCATTTTGAAAGTCAATTTAGCTTCTCTTAGAAGTGGAAAGCAGGTCATGTGGAACATAAGTCTAAGTATAAAAGGACACAGATTGCTCTTGGAACCACAAGTTCAAAGAGATCCCATATGTCCAAGGTACGATAATCACCTTGTTTTTTCACTTCTAACTCTGCACTCAACTTACTTTGATTCCAAAATTTGGAGCATATTCAATATATACGACCTAGGTTTATATTGGGTTTTAATTCCTAACTCTCTCTCCTCTTCTGCTTTTTCTCTTTTCTCAAAAATGTATATCATGTCTTTGTCCATGAATTCTGTTATGGTTCCCAAATGTTTGATTTGTTGTTAAACTTGAATGATCAAGTTTGTGCACTGGTGTTAGACAATGTATTAAGCATCTCCTTTTGATTGTCTTTTCATCTTTGTTCAAGGACTTGTCCTGTTTTAGTAGGAATGACTATATAACATAAAGGATGACTCCACTGTTAATTCAAGAAATTGGAAGGTAGACTTACTGTTTTAAAAATTAGAGGGAAAAGAAGAAAAAAAGCCTTCTAGGATCAAACAAAATTTCCTGTTCTGTATTTAATTTTCAACTTCTTATAGACTTATAGTCATAATATATTGTCGTTAACTTGTTACACAGTGGCGAACTGCAGTTTCCTATCAAGTCTTTGATGGCTTCCTCCTAATTGCTATACTGATAATTCTATTGGTAATTGGTAATGAGTGGCCATGGGCAGAGTGGAGGAGGAATATTCAACTGACATAAAGTGACGATGCCTAAATCACTAATTATGACATTTTGGTCCTATGGTGTAGATTGATGGTAACCTTCGTACATCATTATGGTCCTTGTCCTTGACCCTTGAAATCCTGTTTCAAATACCAAAATTTTAGTTGGACAAGCTATCCACTTATACCTCAAGTTAGCATTATTATGGCAAAATTATATTATCTTTGTAAGCTTCTTTTAGTTGTCAATGGTCGAGCAATTATGGAATATATCCATTAGCGACCACAACATGATTTATAAGAATAAAAAAATAGAGGAATAAGTTGCACCTATCTCTATGGATCCTTTTTTCAAAGGAAAAAAATATTAAAAATATATCATCTTTAGAAAAATGGTCATGTCGCAACTTGATTAAGCTTTAGAGTGGCTGCATAAATATGGGAGCTAATTAGGAATGCTTCTCGTCCGAATTTGAATATTGTTTTACTATACTACAAGGATACAAGTTTAAGCCAAAGTGAGCATAGGTTAGCGGTAATCAACATTACTCATTCGTTCCCTCGAGATTGAAGGTCTGAAAACAAATTTTCTTTATGCAAGGCATAACGCAGGAGTTGTTTAGATGGACCTTTTAATTGTTTATAAGCGTAGTGTCATGCCTAAACCAAATTAGACCTAAGCCCAGGTTGTCTAATCATCAACAACGTTATCAAGCATAGATTCTTTTTACATGCATGCCGTGGTTTGGAGATGATGGGTAAATTCCAATATTTTCTGGTGTTTAAAGTTGAGATTCAGAAGCAGGTTGAAAAATAAAGAAGAAGAAACCAGCAATTTAGTCAAGCGGGACAAAATGGGGCTTTCCAAAAATGAACAGCATGATTGCTGGGCTCCGACCAGATCAGAAGGGCTAGCTGCACCCACAGTACTTCGTGAGTTTGCTAATTCTCTACTTTTTTATTTTTTATTTATTAGTTTTTTTAAATTGAATTTTTTGCTCTCCCCACTATGATACATTACAGATGGACATGTGGTTTGGATGTAGACTCAATATTTTACATAGCATTGTACACTTTTTGGAAATACTTTGATCCCTCTTGGAGGCCATTTCTCTGGCAGAACAGTGGGTGGCAGATTGGTGTCTGAAAAGAAAGCATTCGTACGTTATGTTGCTTTCGTCTTGTAA

mRNA sequence

GATAAGAGTTATTTGGTCGAAAAAATTTACATTTCAAATAACTAGAGAGTCCTTCGATCCAACCCAACTCAACTCACCAATGCCCCTATTCTCCACAGTTCACACTCCCTATGCAACGGTTGCTTAGCTCTTCAATCTTGAACTTCACCCAGCCGATCGGCAGCTCCACCTCTACGACTGCAGCAGGAACAGCAGAGTCGCATACCCTCTCCACGATAAGTTGTGGTTCTTGTCCATGGTTTGATTATGTCACTTGTGGTTACGAGTTGGAGTATGTTGTTGGAAGCATTCTTGTGGATAAGTGGAAAGCAGGTCATGTGGAACATAAGTCTAAGTATAAAAGGACACAGATTGCTCTTGGAACCACAAGTTCAAAGAGATCCCATATGTCCAAGTTGAGATTCAGAAGCAGGTTGAAAAATAAAGAAGAAGAAACCAGCAATTTAGTCAAGCGGGACAAAATGGGGCTTTCCAAAAATGAACAGCATGATTGCTGGGCTCCGACCAGATCAGAAGGGCTAGCTGCACCCACACATTGTACACTTTTTGGAAATACTTTGATCCCTCTTGGAGGCCATTTCTCTGGCAGAACAGTGGGTGGCAGATTGGTGTCTGAAAAGAAAGCATTCGTACGTTATGTTGCTTTCGTCTTGTAA

Coding sequence (CDS)

ATGCAACGGTTGCTTAGCTCTTCAATCTTGAACTTCACCCAGCCGATCGGCAGCTCCACCTCTACGACTGCAGCAGGAACAGCAGAGTCGCATACCCTCTCCACGATAAGTTGTGGTTCTTGTCCATGGTTTGATTATGTCACTTGTGGTTACGAGTTGGAGTATGTTGTTGGAAGCATTCTTGTGGATAAGTGGAAAGCAGGTCATGTGGAACATAAGTCTAAGTATAAAAGGACACAGATTGCTCTTGGAACCACAAGTTCAAAGAGATCCCATATGTCCAAGTTGAGATTCAGAAGCAGGTTGAAAAATAAAGAAGAAGAAACCAGCAATTTAGTCAAGCGGGACAAAATGGGGCTTTCCAAAAATGAACAGCATGATTGCTGGGCTCCGACCAGATCAGAAGGGCTAGCTGCACCCACACATTGTACACTTTTTGGAAATACTTTGATCCCTCTTGGAGGCCATTTCTCTGGCAGAACAGTGGGTGGCAGATTGGTGTCTGAAAAGAAAGCATTCGTACGTTATGTTGCTTTCGTCTTGTAA

Protein sequence

MQRLLSSSILNFTQPIGSSTSTTAAGTAESHTLSTISCGSCPWFDYVTCGYELEYVVGSILVDKWKAGHVEHKSKYKRTQIALGTTSSKRSHMSKLRFRSRLKNKEEETSNLVKRDKMGLSKNEQHDCWAPTRSEGLAAPTHCTLFGNTLIPLGGHFSGRTVGGRLVSEKKAFVRYVAFVL
Homology
The following BLAST results are available for this feature:
BLAST of CcUC03G051750.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC03G051750.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC03G051750.1 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC03G051750.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CcUC03G051750CcUC03G051750gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC03G051750.1-exonCcUC03G051750.1-exon-CicolChr03:12653211..12653333exon
CcUC03G051750.1-exonCcUC03G051750.1-exon-CicolChr03:12653472..12653609exon
CcUC03G051750.1-exonCcUC03G051750.1-exon-CicolChr03:12655001..12655096exon
CcUC03G051750.1-exonCcUC03G051750.1-exon-CicolChr03:12655234..12655317exon
CcUC03G051750.1-exonCcUC03G051750.1-exon-CicolChr03:12656246..12656460exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC03G051750.1-cdsCcUC03G051750.1-cds-CicolChr03:12653211..12653333CDS
CcUC03G051750.1-cdsCcUC03G051750.1-cds-CicolChr03:12653472..12653609CDS
CcUC03G051750.1-cdsCcUC03G051750.1-cds-CicolChr03:12655001..12655096CDS
CcUC03G051750.1-cdsCcUC03G051750.1-cds-CicolChr03:12655234..12655317CDS
CcUC03G051750.1-cdsCcUC03G051750.1-cds-CicolChr03:12656246..12656350CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC03G051750.1-five_prime_utrCcUC03G051750.1-five_prime_utr-CicolChr03:12656351..12656460five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CcUC03G051750.1CcUC03G051750.1-proteinpolypeptide