CcUC03G050020.1 (mRNA) Watermelon (PI 537277) v1

Overview
NameCcUC03G050020.1
TypemRNA
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr03: 8207524 .. 8207849 (+)
Sequence length308
RNA-Seq ExpressionCcUC03G050020.1
SyntenyCcUC03G050020.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGATTCCAACATATTGTTATGTTTTGGATTCGGAGCAGACCATCTGATCGGTCCTTTGGGCATGCAACTTAGGAAGGTTGAGGCAGGGATTGGTGCCCTTGCACCCATTCCATTAGGATCAAAAGTAGTAAACTCGTAAGAGCTTGGAGGAAGGGAGATTGATGACTTAGGTACTTCGACAATAGATTCTTTAAAAGTAGGAATTGTAGCTTCCAAAGTTGTTGGAGCAAGTACAGAATCAAACATAATTCTAGAAGTTGCCATGAGCGTGGATGGAGAAGACATGGCAAGGAGGAAGATGAATGTGAAAAGTGCAGTATCATGT

mRNA sequence

TTGATTCCAACATATTGTTATGTTTTGGATTCGGAGCAGACCATCTGATCGGTCCTTTGGGCATGCAACTTAGGAAGGTTGAGGCAGGGATTGGTGCCCTTGCACCCATTCCATTAGGATCAAAAGTAGTAAACTCGGAGATTGATGACTTAGGTACTTCGACAATAGATTCTTTAAAAGTAGGAATTGTAGCTTCCAAAGTTGTTGGAGCAAGTACAGAATCAAACATAATTCTAGAAGTTGCCATGAGCGTGGATGGAGAAGACATGGCAAGGAGGAAGATGAATGTGAAAAGTGCAGTATCATGT

Coding sequence (CDS)

ATGCAACTTAGGAAGGTTGAGGCAGGGATTGGTGCCCTTGCACCCATTCCATTAGGATCAAAAGTAGTAAACTCGGAGATTGATGACTTAGGTACTTCGACAATAGATTCTTTAAAAGTAGGAATTGTAGCTTCCAAAGTTGTTGGAGCAAGTACAGAATCAAACATAATTCTAGAAGTTGCCATGAGCGTGGATGGAGAAGACATGGCAAGGAGGAAGATGAATGTGAAAAGTGCAGTATCATGT

Protein sequence

MQLRKVEAGIGALAPIPLGSKVVNSEIDDLGTSTIDSLKVGIVASKVVGASTESNIILEVAMSVDGEDMARRKMNVKSAVSC
Homology
[Close]
BLAST of CcUC03G050020.1 vs. NCBI nr
Match: KAE8649712.1 (hypothetical protein Csa_012861, partial [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 2.4e-10
Identity = 47/84 (55.95%), Postives = 59/84 (70.24%), Query Frame = 0 

Query: 7   EAGIGALAPIPLGSKVVNS--------EIDDLGTSTIDSLKVGIV-ASKVVGASTESNII 66
           +AG GALAPIPLGSK++NS        + DD GTS IDSLK+ +V +S+VVG   +S++ 
Sbjct: 22  DAGNGALAPIPLGSKLINSSEVGGREIDDDDSGTSAIDSLKLRMVDSSRVVGGCAKSSMP 81

Query: 67  LEVAMSVDGEDMARRKMNVKSAVS 82
           L VAM +DGEDMA RK NVK   S
Sbjct: 82  LVVAMILDGEDMAMRKKNVKKTTS 105

[Close]
BLAST of CcUC03G050020.1 vs. NCBI nr
Match: KAG6581979.1 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.0 bits (136), Expect = 8.9e-05
Identity = 44/105 (41.90%), Postives = 54/105 (51.43%), Query Frame = 0 

Query: 5   KVEAGIGALAPIPLGSKVVNS------EIDDLGTST------------------------ 64
           +VE GIGALAP  LGS+V         +IDDLGTST                        
Sbjct: 16  EVEEGIGALAPTLLGSEVAKPSEVGGIQIDDLGTSTDVVGAFVVVNGALEGTKLDPFNKK 75

Query: 65  ------IDSLKVGIVASKVVGASTESNIILEVAMSVDGEDMARRK 74
                 +D+L+VGIVAS VV A TES++ LEVA S + ED  +RK
Sbjct: 76  GWRSSAMDALEVGIVASNVVRACTESSMALEVATSEEEEDTVKRK 120

The following BLAST results are available for this feature:
BLAST of CcUC03G050020.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649712.12.4e-1055.95hypothetical protein Csa_012861, partial [Cucumis sativus][more]
KAG6581979.18.9e-0541.90OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1, partial [Cucurbita ar... [more]
BLAST of CcUC03G050020.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC03G050020.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC03G050020.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CcUC03G050020CcUC03G050020gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC03G050020.1-exonCcUC03G050020.1-exon-CicolChr03:8207524..8207659exon
CcUC03G050020.1-exonCcUC03G050020.1-exon-CicolChr03:8207678..8207849exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC03G050020.1-five_prime_utrCcUC03G050020.1-five_prime_utr-CicolChr03:8207524..8207585five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC03G050020.1-cdsCcUC03G050020.1-cds-CicolChr03:8207586..8207659CDS
CcUC03G050020.1-cdsCcUC03G050020.1-cds-CicolChr03:8207678..8207849CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CcUC03G050020.1CcUC03G050020.1-proteinpolypeptide