CcUC02G036110.1 (mRNA) Watermelon (PI 537277) v1

Overview
NameCcUC02G036110.1
TypemRNA
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr02: 31956925 .. 31958093 (-)
Sequence length351
RNA-Seq ExpressionCcUC02G036110.1
SyntenyCcUC02G036110.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGATGCAAACACAACAATTCCCTGGCATAAATTTGAAAGGTTAGTCCATGCTATTTTGCTTCCTTTTGTGTATGTTCTAACATGACTTGACTTTTTTTTTCTGCTGGTGAAATTGTTCATTATTTGTATGACAAGAGACAGCATATAGAAGTTTTTTTGCTCTAATCTTGAAAAATATTAGGTGTTAATTCTCCATTTGTACCATCATCCTTTATTTTCTTAGACCAGCATTCCCATTCTTCATTCAACAGACTCTACTGACTTATGAAATAGCTAAGTTTTGTTAATAAAAATGACTTACCACTGGTTGCATTCGATTCTTGCCGATAGGATAACGGTACTGATTTGGCTTTCTCATAGCATTAGCTGTAAACCATAATATGAACCCCGATAAAAGATCCAACAGGGAATCTAGTGTTGAAGCTATAACTGCTAGTGATCTGCTTTCAACTGAAGCATAAACTTTAGCGATGAAGATCAACATGTTGGCTATGTTGGATGTACATATTGCCCGTCTCTCACTGATCGCCTCTTGCTTCTTTTCATCCTGATATATTAGAAACTAGGTGAATGTGCTGAGAAGAAGGCGAGAGTGTTAGAGAAAGAAAAAGAGACAAACCTCAGTTAAAGTTCCAGGCACGATACCCAGTTCATTGTAGGAGTCAACTTCATTGAATCCTTTGAGAAGACTTTCCTGCCTTTCATAATACTTAGCAACCTTTCTCTGCCTGTCTATGATCAAGATAAAAACGTTCCTTAGTTTCACCTCCAAAACTCAAAAGTTTCTCTGTTGAAGGTAACTGAAGTAGCAGCGTAGAAGAAGTACTTTATTCAGGAACTAGAATTGATAAGATGATGTATTTGAAAAGCTTACTCCATGAGTTCCAGTAATAAACAATGCCATGATGAGACCTCATGTTTGCAGTAGGCAAGCGGAACTCGTCCATATTGAGCCGCCACGATGGCACCTTCGTTACCATTCCATCTGTTCCCGCAGCCACGCTCTCGGGGGACAAAAGCTCTGTTCTGAAGGAATCTGTTCTAGGATTATCTGCCATTTTTATGCTGAACCAAACTAAGATTCGGGTTAAAAAGGAAGCGATTTTCTGTTTCTTAAAAGAGAGAGATCATTATAAAGGAGGGAAAGAAAGTGTTGCTGACTAA

mRNA sequence

ATGACTGATGCAAACACAACAATTCCCTGGCATAAATTTGAAAGGTTAGTCCATGCTATTTTGCTTCCTTTTGTGATAACGGTACTGATTTGGCTTTCTCATAGCATTAGCTTAGGCAAGCGGAACTCGTCCATATTGAGCCGCCACGATGGCACCTTCGTTACCATTCCATCTGTTCCCGCAGCCACGCTCTCGGGGGACAAAAGCTCTGTTCTGAAGGAATCTGTTCTAGGATTATCTGCCATTTTTATGCTGAACCAAACTAAGATTCGGGTTAAAAAGGAAGCGATTTTCTGTTTCTTAAAAGAGAGAGATCATTATAAAGGAGGGAAAGAAAGTGTTGCTGACTAA

Coding sequence (CDS)

ATGACTGATGCAAACACAACAATTCCCTGGCATAAATTTGAAAGGTTAGTCCATGCTATTTTGCTTCCTTTTGTGATAACGGTACTGATTTGGCTTTCTCATAGCATTAGCTTAGGCAAGCGGAACTCGTCCATATTGAGCCGCCACGATGGCACCTTCGTTACCATTCCATCTGTTCCCGCAGCCACGCTCTCGGGGGACAAAAGCTCTGTTCTGAAGGAATCTGTTCTAGGATTATCTGCCATTTTTATGCTGAACCAAACTAAGATTCGGGTTAAAAAGGAAGCGATTTTCTGTTTCTTAAAAGAGAGAGATCATTATAAAGGAGGGAAAGAAAGTGTTGCTGACTAA

Protein sequence

MTDANTTIPWHKFERLVHAILLPFVITVLIWLSHSISLGKRNSSILSRHDGTFVTIPSVPAATLSGDKSSVLKESVLGLSAIFMLNQTKIRVKKEAIFCFLKERDHYKGGKESVAD
Homology
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BLAST of CcUC02G036110.1 vs. NCBI nr
Match: KAG7035309.1 (hypothetical protein SDJN02_02104, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 71.2 bits (173), Expect = 6.4e-09
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 0 

Query: 39  GKRNSSILSRHDGTFVTIPSVPAATLSGDKSSVLKESVLGLSAIFMLNQTKIRVKKE 96
           GK+NSS+ SRH+G FVTIPSVPAAT SGDKS     SVLGLS IF+LN TK  VK++
Sbjct: 82  GKQNSSMFSRHEGIFVTIPSVPAATPSGDKS-----SVLGLSVIFVLNPTKNLVKRK 133

The following BLAST results are available for this feature:
BLAST of CcUC02G036110.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7035309.16.4e-0968.42hypothetical protein SDJN02_02104, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CcUC02G036110.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC02G036110.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC02G036110.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CcUC02G036110CcUC02G036110gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC02G036110.1-exonCcUC02G036110.1-exon-CicolChr02:31956925..31957163exon
CcUC02G036110.1-exonCcUC02G036110.1-exon-CicolChr02:31957721..31957758exon
CcUC02G036110.1-exonCcUC02G036110.1-exon-CicolChr02:31958020..31958093exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC02G036110.1-cdsCcUC02G036110.1-cds-CicolChr02:31956925..31957163CDS
CcUC02G036110.1-cdsCcUC02G036110.1-cds-CicolChr02:31957721..31957758CDS
CcUC02G036110.1-cdsCcUC02G036110.1-cds-CicolChr02:31958020..31958093CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CcUC02G036110.1CcUC02G036110.1-proteinpolypeptide