CcUC01G013780.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC01G013780.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Pentatricopeptide repeat-containing protein
Location	CicolChr01: 26411031 .. 26416734 (-)
Sequence length	1544
RNA-Seq Expression	CcUC01G013780.1
Synteny	CcUC01G013780.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAGAGGCATTTAATTTACGGATAGTATAATGGTAATTTTAGCATTCATCTTCATCGAGTTAGGGCTGAAAATCACGATGGTCAGAGCGTGAGAGAAAAACAACACGAAAACGCTGGAAGTTTAGAACGGAGAAGAAGAATCGCATAGCAGCGGCGTGGGTTTAGGGTTTAGAGTACTTGAGCCTTCTTCATACCAGCTGTATGGTTCGAGCCACTTTTCCATTTACTTGCTTTTTCGATTTCAGTTCTGGCAGGTCATGTCAGTTTATGAACTTGCTATCTACCAGGAATCTTCTGTATTACTCGTACGCTGTAAGTCGAACCTCTAAATTTCTTCTGTTCTTGTTTGTTTCTGTAATAGTCCTCTGGAAAATTGATTGTTTTGACACGAACTGTGTTTGTTATCAATTAGATTCGACCCAAAAATTCATTCATTTCTCTAGGCGTGCTGTCATTATCAAAACGATAGTTTTCCGATTGGTTTTGAATTGAGCATTATCTGAACGTTTATGCCTTTGTGGTGTCCACACAGTTTTGTATTACTGGGGTGGTTTGAAGGTTTCTTTTCATTCATTTTTTAAATGTTCTTACTCCCGGTTTTGTTGTATTTCTAAGTTTTGAAGTTGATGGATACGTAAAAGTATCCAAGTTAGAGTAGTAGTCGTAGTGATGATAAGGATATCCTTTTAGAATTTTTGATCAAGTGAAAATTGTGGGGTTAGAAATTTGTTTTTACACTTTTATATGACTATTATGTTTATCAGTTATTGGTCATACCATTTAGGATTTATGAACTGTTTTTAATTCATTATTTGAGGCTTCTACCTCATATTGTCTCAAGGATTATGCCTCGCCTCTCCCAGAGGAAAAAAAAAAAAGGCTCAAAGGCCGTTTTTAATCTTTTAGAATATTGATTAGAGTTCATGGCAATAGAGCTTTTGCTTCTGGCCTGTTGATGATTCAATCAACACTGCTGAGGATTGTCCGTAGATGTTGTTGATAGGTGGAATCCAGCTTATTTCTCAACGTCTCTTCTAGGTTTCCATTACCAAGACTTTGTATCTCTTTCTTTAAAGAAAATCTGTCATTGGCAGACTTTGTAATAGATCGTCTTTTTCTAGAGCTTATAACCAATGTTTATTCACTAACTTAATTTACCAAATTTTTGTTCCTTCATATCAATTATTGGAAACCTGGATTCTGGAAGCCCAATAGTCAATTGGTAACTCATCGATGCCATTTATCTTTCTTAATTCAACTTAGGTTAAGAACTACATCTTATACACCTTCACATCTTACCTGCATTCTGCATATATCTTTTAAATGATTTGCGAATTAAATATTTAATTTTGTCTTTACATGTCTAATACAGAATAGCATTGCATGTATCCCTGTTAGTAACTCTCAAATCTGGCCACTTTATGCCATCAAACGCCTTAGCCATCAGTCATCTACTACAAATATATCTCCTGATGAAGTGAAAGTAGGGGATGAAGTCTTGAATCAGATTATTACCCCAAGGGAAAATGTCTCAAGGTGTAGCCATGAAACCTTTGATACTTGCATTGATAAGATGTGTCAATCTGGAAATGTTGCAGCTGCTGCTCAACTTAAATCTTTGTGCGATAGGAAAATATCTCTTAGCCCCTCCAAGGCATATGATATGGTTTTTCTTGCAGCAAGTGAAAGGGGAGACATTACCCTTTTATGTCAAGTTTTTAAAGATTACCTGGTTTCCTGTAAATCATTGAGTTCAACCGCTTACATGAATTTTGCCAAGGCCTTTACCACGACAAATGATAGTAGCAAGCTACTGGAATTTGTCAAAGAAATAATTGAGATGAGATTTCCAAACTGCATAGTTATAAACAGAATTATATTTGCCTTCTCCAAATGTAGGGAGATTGATAAAGCCCTTCAGATATTTAATCAGATGAAGCTTCTGTCATGTAGACCAGATTTGTATACGTATAACATCATTTTGGATATGCTAGGCCGTGCAGGTCGCTTGAATGAACTTCTTCATATATTTGTTTCCATGAAAGAAGATGGCATTGCCCCAGATATTGTGTCCTATAATACATTGATAAATAGCTTAAGGAAGGTGGGTAGACTAGATATGTGCTTGATTTACTTCAGGGAAATGGTTGCAATGAGAGTGGAACCTGATTTGCTTACTTATACTGCTTTGATAGAGAGTTTTGGTCGATCTGGAAACATTGAGGAAGCTTTGACACTCCTCAGGGAGATGAAGCTTAGGAATATCTGTCCTTCAAGCTATATCTACAAATCCCTTATCGGAAATTCAAAGAAGATGGGGAAGGTGGAATTGGCTATGAACCTTCTCAAGGAAATGAAATTAAGTGATTCAAAACTTGCAGGTCTGAAGGATTTCAAACGAAGAAAAAGGTAACCAATTACAAGGTTTCATAGTGACTCTGAGGTTGATAAACCTGTGAATGGCATGACTTTAATCTTCAAACTGAGATCTGCCAGAGTGATTCCATCTACAGGTAATATTTGTACCCATTTATCTACCTCTCTAATGTCTGACATGAAAGACAAAAGTTGTAATAGAATTCTTACCATGAAAATTGGAGATTCATTCTAGGACTAATATATTTAACTTGAGATGAATATTTAGTTTGGTCAATTGTCTGTCATTTAAGGTGTAAGTGTGTAACTGTCATTTTGAGTAAAAGGATAGGTAGAAAAGTTGCATGTTTCCACAGTGTTTCATTCTTTCTTTATCATGTATCTCTAGAGAATTATAGTGATTTGGGTGGAGTTTATTCAGAGTGAAGAGCCAGAGAAAAATCTGTAACTAGTGGTAGGATACCTTGGGAAACATGAGTGATCTTTTGTTTGTTTTGTATAGTAGACTCGAACCAAGGTTTTGTGGGGATCAGAGGAATCACCATGCCAAACCAGTCAGTTTGACTTGTATCGGTCTATTAGATTCTCTGAGTGACTATGATTTTCCATGCTTGTGAATTCTTTGGCTACTGCTTCATTAACCATCTTTCAAGCAATTGGAAATTTGGAATAGAGAAGTTTCGTTTGTCTATCAAGGCAAATTTGTAAATGTGGGATGGGTTGATTTCACGTCAAATTAGTGTTGATGGTGATGAAAATGTCAAATTAGTGTTGATGTTGATGAAAATGTCGAGATGTCAATTTTGTGGTTTGGAAAATGTTGAGTTTTCGTTTGTCATTAAATCTTTAATACTCTTTTAGGTTATTTTAATAAGAAATTATCTTAAAGGACAAAATTGTTGAAAATATTTACAATTAATAGTAAAATATATCGTAAATAGTAAAATTTTGCTATGTTTGTAAATATTTTTATTCCTTTTAATATATTGAAAGGAGTTTTATTTTAGCTTTTTAAATTATTATTATTATTATAATATAATGTAACATTTATCTATGTTCTTAAACCTTTTTTTAGAAAAAATTAAGTCTATTTTAAAATTTTAAAATTTCTTTTAAGGTTAAAAATGTCTCTAAACTTTCATAAAAGTAACAATTTTATTTATGAATTTTGGTTCAGATGTAGTGTCTATCGTAGAAATTCTTGTTAAGATTTAATGAGAATTTTTGCACCAATAAATTGAAAATTAGACCTTGTCACGTCATCGCGACACGGAGCGATCAACGTCTTTCTTTAAGGGTCTCTTTTGAGGTGAAAGATTTGGAGCCGCCACCGTCAATAATTAATGGGTGTGACCGAGTCTTTTTAGAGTTGAAAGATTTGGAGTCGCCACCAATAATTGTAAGTGTATTGATCACCTATTTTAAAAGGAAAAGATAGGTATTCACTTAGGGTCAACTTAAGAACCCAACTTAGACAGAAAACTGTTGCTTATAGTAAATTTTGTTTAAAATTCATAGTCAAACTTTATTTTTATATTATAAATTCAATTGAAATAGAGAAAATTAATTAACTCCTAAATGTTAAAATTGAATTTGAACAATGTCTCACATCTCACTCTAACTTTATAACTCAAGTAGAGTCTCATTTTGTGAGCAAACGAGCTTCCATCAATTTATTATCATGTTAATGTTTGAAATCCTTAGTTTGAGAAAACATTTACCTCAAGAATTTGAAACATTCACTCAGCCATAGGATCATAACAATATAAAAAATGTCTCATGTGAATCAAATCACATTTTAGAAATAAAATATGAATTAAACCCTTATGAGTAGTGTAAGCTCCAAAGTAAGATTGAAATTCATTTTGTAAATCAAGGTGAAAACGAAATTGAAATTTTATTTATAATACTCAAATTTGAAGGGGATTGAAATTTACTTGAAAACTTTGAATTAAAACCAAGTTTACAATCTAATCATGAAAATTTCAAACTAGAATTGAAATTGAGATGCTTTTAAGAAATTCAAAATCAAAATGATTCAAATTTTAGTTAAATCAAATTGTTGACACCATTATTGATGTTGGAATTCCTTTTCTAAAGCTTCAAATTGAAGATTAAATGAAAAACTTGAAAAACTTGTATTAAAGCTAATTGAAAATTTCAAATTAAAGCCAAATTAAGTTTCAGTTAAAAAAATCTAAATGAGAAATCAAATCAAAATTTATTTGAACAACTCCATTAAAGACTAATTGGAGAAAGGATTTGCAAAAATAAATAAAATCCTTTTTTTTTAGTTTAAATAAAATGAGGGAGAAAAATAGAAAAAAGCAAAACTCATAATTCAAAACAATAATAAAATAATAAAAAGGTAAATGGTTGGCCACCAACTTTACCAAATTTCCAATCGTCTTCCCCTCTTCTATGATTTTTGCCTTTCATTTCCCTTTTCCTCTTTGAAAAATTGCACGAAATGACCCAAAAACTAAAAACTTATCTATGGATGACCTACTCCCAAAAACTTTATCATTAGTGATCTTTTGGCCACGTGAAATACCAATTTTATCCCCCAAAATTAAATGAGCCCAAAACTCTCTCTCCCTCGAAATTGATTGCATTGAATGCTGAAGCCTTCATCACCAACATTTTACAGAATCATTCAATGTCAACTACTGTTATACCAACAAAATTGAATGCAAGGGTACTAATGGACGGTCGCTTTCACACATTCTTCCATTATTCCATTGTGTTCTGCGAGTATCATGAACTTCTTCTTCCATTTTTCTTTGCGAGTTACAACGTCTGTCGCTTTTTTCATCTTCGTCCAGTGTTCATTTTAGCAACATTGTGGGTTAGAATCAGAAACACAGAGAATGTAAGCATTTCTCTTCGTATATCGTATAGTTCTATATAGACGGTAGCTTATGTAGAAGTAAATGATCGATTATCTTCATACTATAATCAATTATAGTTAACTAAACGATCGCCTACACTATTCTCAGCGATCGCATACACGATATTAGGCGATTGCTTACACACCATGTATGTGATCACTCATTATGATACTAGGCAATTGCTTAATTCATCACCAGGTGATCACATACATGATACTAGGCGATTGCTTAATCCATCATCAGGCGATCGCATACATGACACTGGGCGATCGTTTACATTTGCCTACGTGATCGCTTACATTTGCCTGAAGAACATTTCTAACCAAAAACCTTAACTTCTCTGCAGGTCAATGAATCTACTTCGCATCTTTGTACGATTTAGTGGGGAATGAGATCAGTCCGGATGCAACTATGTTGGAGGTCAAATGAAAGGTCT

mRNA sequence

TGAAGAGGCATTTAATTTACGGATAGTATAATGGTAATTTTAGCATTCATCTTCATCGAGTTAGGGCTGAAAATCACGATGGTCAGAGCGTGAGAGAAAAACAACACGAAAACGCTGGAAGTTTAGAACGGAGAAGAAGAATCGCATAGCAGCGGCGTGGGTTTAGGGTTTAGAGTACTTGAGCCTTCTTCATACCAGCTGTATGGTTCGAGCCACTTTTCCATTTACTTGCTTTTTCGATTTCAGTTCTGGCAGGTCATGTCAGTTTATGAACTTGCTATCTACCAGGAATCTTCTGTATTACTCGTACGCTAATAGCATTGCATGTATCCCTGTTAGTAACTCTCAAATCTGGCCACTTTATGCCATCAAACGCCTTAGCCATCAGTCATCTACTACAAATATATCTCCTGATGAAGTGAAAGTAGGGGATGAAGTCTTGAATCAGATTATTACCCCAAGGGAAAATGTCTCAAGGTGTAGCCATGAAACCTTTGATACTTGCATTGATAAGATGTGTCAATCTGGAAATGTTGCAGCTGCTGCTCAACTTAAATCTTTGTGCGATAGGAAAATATCTCTTAGCCCCTCCAAGGCATATGATATGGTTTTTCTTGCAGCAAGTGAAAGGGGAGACATTACCCTTTTATGTCAAGTTTTTAAAGATTACCTGGTTTCCTGTAAATCATTGAGTTCAACCGCTTACATGAATTTTGCCAAGGCCTTTACCACGACAAATGATAGTAGCAAGCTACTGGAATTTGTCAAAGAAATAATTGAGATGAGATTTCCAAACTGCATAGTTATAAACAGAATTATATTTGCCTTCTCCAAATGTAGGGAGATTGATAAAGCCCTTCAGATATTTAATCAGATGAAGCTTCTGTCATGTAGACCAGATTTGTATACGTATAACATCATTTTGGATATGCTAGGCCGTGCAGGTCGCTTGAATGAACTTCTTCATATATTTGTTTCCATGAAAGAAGATGGCATTGCCCCAGATATTGTGTCCTATAATACATTGATAAATAGCTTAAGGAAGGTGGGTAGACTAGATATGTGCTTGATTTACTTCAGGGAAATGGTTGCAATGAGAGTGGAACCTGATTTGCTTACTTATACTGCTTTGATAGAGAGTTTTGGTCGATCTGGAAACATTGAGGAAGCTTTGACACTCCTCAGGGAGATGAAGCTTAGGAATATCTGTCCTTCAAGCTATATCTACAAATCCCTTATCGGAAATTCAAAGAAGATGGGGAAGGTGGAATTGGCTATGAACCTTCTCAAGGAAATGAAATTAAGTGATTCAAAACTTGCAGGTCTGAAGGATTTCAAACGAAGAAAAAGGTAACCAATTACAAGGTTTCATAGTGACTCTGAGGTTGATAAACCTGTGAATGGCATGACTTTAATCTTCAAACTGAGATCTGCCAGAGTGATTCCATCTACAGGTCAATGAATCTACTTCGCATCTTTGTACGATTTAGTGGGGAATGAGATCAGTCCGGATGCAACTATGTTGGAGGTCAAATGAAAGGTCT

Coding sequence (CDS)

ATGGTTCGAGCCACTTTTCCATTTACTTGCTTTTTCGATTTCAGTTCTGGCAGGTCATGTCAGTTTATGAACTTGCTATCTACCAGGAATCTTCTGTATTACTCGTACGCTAATAGCATTGCATGTATCCCTGTTAGTAACTCTCAAATCTGGCCACTTTATGCCATCAAACGCCTTAGCCATCAGTCATCTACTACAAATATATCTCCTGATGAAGTGAAAGTAGGGGATGAAGTCTTGAATCAGATTATTACCCCAAGGGAAAATGTCTCAAGGTGTAGCCATGAAACCTTTGATACTTGCATTGATAAGATGTGTCAATCTGGAAATGTTGCAGCTGCTGCTCAACTTAAATCTTTGTGCGATAGGAAAATATCTCTTAGCCCCTCCAAGGCATATGATATGGTTTTTCTTGCAGCAAGTGAAAGGGGAGACATTACCCTTTTATGTCAAGTTTTTAAAGATTACCTGGTTTCCTGTAAATCATTGAGTTCAACCGCTTACATGAATTTTGCCAAGGCCTTTACCACGACAAATGATAGTAGCAAGCTACTGGAATTTGTCAAAGAAATAATTGAGATGAGATTTCCAAACTGCATAGTTATAAACAGAATTATATTTGCCTTCTCCAAATGTAGGGAGATTGATAAAGCCCTTCAGATATTTAATCAGATGAAGCTTCTGTCATGTAGACCAGATTTGTATACGTATAACATCATTTTGGATATGCTAGGCCGTGCAGGTCGCTTGAATGAACTTCTTCATATATTTGTTTCCATGAAAGAAGATGGCATTGCCCCAGATATTGTGTCCTATAATACATTGATAAATAGCTTAAGGAAGGTGGGTAGACTAGATATGTGCTTGATTTACTTCAGGGAAATGGTTGCAATGAGAGTGGAACCTGATTTGCTTACTTATACTGCTTTGATAGAGAGTTTTGGTCGATCTGGAAACATTGAGGAAGCTTTGACACTCCTCAGGGAGATGAAGCTTAGGAATATCTGTCCTTCAAGCTATATCTACAAATCCCTTATCGGAAATTCAAAGAAGATGGGGAAGGTGGAATTGGCTATGAACCTTCTCAAGGAAATGAAATTAAGTGATTCAAAACTTGCAGGTCTGAAGGATTTCAAACGAAGAAAAAGGTAA

Protein sequence

MVRATFPFTCFFDFSSGRSCQFMNLLSTRNLLYYSYANSIACIPVSNSQIWPLYAIKRLSHQSSTTNISPDEVKVGDEVLNQIITPRENVSRCSHETFDTCIDKMCQSGNVAAAAQLKSLCDRKISLSPSKAYDMVFLAASERGDITLLCQVFKDYLVSCKSLSSTAYMNFAKAFTTTNDSSKLLEFVKEIIEMRFPNCIVINRIIFAFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRLNELLHIFVSMKEDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRVEPDLLTYTALIESFGRSGNIEEALTLLREMKLRNICPSSYIYKSLIGNSKKMGKVELAMNLLKEMKLSDSKLAGLKDFKRRKR

Homology

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BLAST of CcUC01G013780.1 vs. NCBI nr
Match: XP_038893594.1 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g11900 [Benincasa hispida])

HSP 1 Score: 599.4 bits (1544), Expect = 2.2e-167
Identity = 308/355 (86.76%), Postives = 328/355 (92.39%), Query Frame = 0


Query: 29  RNLLYYSYANSIACIPVSNSQIWPLYAIKRLSHQSSTTNISPDEVKVGDEVLNQIITPRE 88
           RNLL+ SYANSIA +PV NSQ WPLYAI+ LSHQSS+TNI PDEVKVGDEVLNQII PRE
Sbjct: 10  RNLLHCSYANSIASVPVGNSQFWPLYAIRLLSHQSSSTNICPDEVKVGDEVLNQIIAPRE 69

Query: 89  NVSRCSHETFDTCIDKMCQSGNVAAAAQ-LKSLCDRKISLSPSKAYDMVFLAASERGDIT 148
           N SRCSHETFD CIDKMC+ G++AAAAQ LKSLCD KI LS SKAYDMV LAASE GD T
Sbjct: 70  NASRCSHETFDACIDKMCRIGHLAAAAQLLKSLCDGKIPLSSSKAYDMVLLAASESGDTT 129

Query: 149 LLCQVFKDYLVSCKSLSSTAYMNFAKAFTTTNDSSKLLEFVKEIIEMRFPNCIVINRIIF 208
           LL QVFKD LVSCKSLSST+Y +FA AFT TNDS+KLLE+VKEIIEM FPNCIVINRIIF
Sbjct: 130 LLFQVFKDSLVSCKSLSSTSYKSFANAFTRTNDSNKLLEYVKEIIEMTFPNCIVINRIIF 189

Query: 209 AFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRLNELLHIFVSMKEDGIAP 268
           AFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGR++E+LH+FVSMKEDGIAP
Sbjct: 190 AFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRVDEILHLFVSMKEDGIAP 249

Query: 269 DIVSYNTLINSLRKVGRLDMCLIYFREMVAMRVEPDLLTYTALIESFGRSGNIEEALTLL 328
           DIVSYNTLINS RKVGRLDMCL+YF+EMVA+R+EPDLLTYTALIESFGRSGNIEEA TLL
Sbjct: 250 DIVSYNTLINSFRKVGRLDMCLVYFKEMVAVRIEPDLLTYTALIESFGRSGNIEEAWTLL 309

Query: 329 REMKLRNICPSSYIYKSLIGNSKKMGKVELAMNLLKEMKLSDSKLAGLKDFKRRK 383
           REMKL+NICPSSYIYKSLIGNS KMGKVELAMNLLKEMKLSDSKLAG KDFKRRK
Sbjct: 310 REMKLKNICPSSYIYKSLIGNSMKMGKVELAMNLLKEMKLSDSKLAGPKDFKRRK 364

[Close]

BLAST of CcUC01G013780.1 vs. NCBI nr
Match: XP_022970322.1 (pentatricopeptide repeat-containing protein At1g11900 [Cucurbita maxima])

HSP 1 Score: 575.5 bits (1482), Expect = 3.5e-160
Identity = 301/360 (83.61%), Postives = 323/360 (89.72%), Query Frame = 0


Query: 24  NLLSTRNLLYYSYANSIACIPVSNSQIWPLYAIKRLSHQSSTTNISPDEVKVGDEVLNQI 83
           +LLS RN+L+YSY NSI  IPV N Q W LYAI+R  HQSST NISPDE KV DEVLNQI
Sbjct: 8   SLLSARNVLHYSYTNSITSIPVGNPQNWLLYAIRRFGHQSSTNNISPDEEKVKDEVLNQI 67

Query: 84  ITPRENVSRCSHETFDTCIDKMCQSGNVAAAAQ-LKSLCDRKISLSPSKAYDMVFLAASE 143
              REN SRCSHETFD CIDKMC+SGN+ AAAQ LKSLCDRKISLS SKAYDMV LAASE
Sbjct: 68  TATRENASRCSHETFDVCIDKMCRSGNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASE 127

Query: 144 RGDITLLCQVFKDYLVSCKSLSSTAYMNFAKAFTTTNDSSKLLEFVKEIIEMRFPNCIVI 203
           RGD TLLCQVFKD LVS K LSST+YMNFAKAF  T+DSSKLLE+VKEIIEM FPN +VI
Sbjct: 128 RGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVI 187

Query: 204 NRIIFAFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRLNELLHIFVSMKE 263
           NRIIFAFS+CREIDKALQIFNQMKLLS RPDLYTYNIILD LGRAGR++E+LH+FVSMKE
Sbjct: 188 NRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKE 247

Query: 264 DGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRVEPDLLTYTALIESFGRSGNIEE 323
           DGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMR+EPDLLTYTALIESFGRSGN+EE
Sbjct: 248 DGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEE 307

Query: 324 ALTLLREMKLRNICPSSYIYKSLIGNSKKMGKVELAMNLLKEMKLSDSKLAGLKDFKRRK 383
           ALTLLREMKL++I PSSYIYKSLI NS K+GKVELAMNLLKEMKLS SKLAG KDFKR++
Sbjct: 308 ALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKR 367

[Close]

BLAST of CcUC01G013780.1 vs. NCBI nr
Match: KAG6583593.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 569.7 bits (1467), Expect = 1.9e-158
Identity = 298/359 (83.01%), Postives = 320/359 (89.14%), Query Frame = 0


Query: 25  LLSTRNLLYYSYANSIACIPVSNSQIWPLYAIKRLSHQSSTTNISPDEVKVGDEVLNQII 84
           LLS RN+L+YSY NSI  +PV N Q W LYAI+R  HQ STTNISPDE KV DEVLNQI 
Sbjct: 9   LLSARNVLHYSYTNSITSVPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVKDEVLNQIT 68

Query: 85  TPRENVSRCSHETFDTCIDKMCQSGNVAAAAQ-LKSLCDRKISLSPSKAYDMVFLAASER 144
             REN S CSHETFD CIDKMC+S N+ AAAQ LKSLCDRKISLS SKAYDMV LAASER
Sbjct: 69  ATRENASMCSHETFDICIDKMCRSNNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASER 128

Query: 145 GDITLLCQVFKDYLVSCKSLSSTAYMNFAKAFTTTNDSSKLLEFVKEIIEMRFPNCIVIN 204
           GD TLLCQVFKD LVS K LSST+YMNFAKAF  T+DSSKLLE+VKEIIEM FPN +VIN
Sbjct: 129 GDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVIN 188

Query: 205 RIIFAFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRLNELLHIFVSMKED 264
           RIIFAFS+CREIDKALQIFNQMKLLS RPDLYTYNIILD LGRAGR++E+LH+FVSMKED
Sbjct: 189 RIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKED 248

Query: 265 GIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRVEPDLLTYTALIESFGRSGNIEEA 324
           GIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMR+EPDLLTYTALIESFGRSGN+EEA
Sbjct: 249 GIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEA 308

Query: 325 LTLLREMKLRNICPSSYIYKSLIGNSKKMGKVELAMNLLKEMKLSDSKLAGLKDFKRRK 383
           LTLLREMKL++I PSSYIYKSLI NS K+GKVELAMNLLKEMKLS SKLAG KDFKR++
Sbjct: 309 LTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKR 367

[Close]

BLAST of CcUC01G013780.1 vs. NCBI nr
Match: XP_023518970.1 (pentatricopeptide repeat-containing protein At1g11900 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 567.8 bits (1462), Expect = 7.2e-158
Identity = 298/360 (82.78%), Postives = 320/360 (88.89%), Query Frame = 0


Query: 24  NLLSTRNLLYYSYANSIACIPVSNSQIWPLYAIKRLSHQSSTTNISPDEVKVGDEVLNQI 83
           +LLS RN+L+YSY NSI  IPV N Q W LYAI+R  HQ STTNISPDE KV DEVLNQ 
Sbjct: 8   SLLSARNVLHYSYTNSITSIPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVKDEVLNQN 67

Query: 84  ITPRENVSRCSHETFDTCIDKMCQSGNVAAAAQ-LKSLCDRKISLSPSKAYDMVFLAASE 143
              REN S CSHETFD CIDKMC+S N+ AAAQ LKSLCDRKISLS SKAYDMV LAASE
Sbjct: 68  TVTRENASMCSHETFDVCIDKMCRSDNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASE 127

Query: 144 RGDITLLCQVFKDYLVSCKSLSSTAYMNFAKAFTTTNDSSKLLEFVKEIIEMRFPNCIVI 203
           RGD TLLCQVFKD LVS K LSST+YMNFAKAF  T+DSSKLLE+VKEIIEM FPN +VI
Sbjct: 128 RGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVI 187

Query: 204 NRIIFAFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRLNELLHIFVSMKE 263
           NRIIFAFS+CREIDKALQIFNQMKLLS RPDLYTYNIILD LGRAGR++E+LH+FVSMKE
Sbjct: 188 NRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKE 247

Query: 264 DGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRVEPDLLTYTALIESFGRSGNIEE 323
           DGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMR+EPDLLTYTALIESFGRSGN+EE
Sbjct: 248 DGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEE 307

Query: 324 ALTLLREMKLRNICPSSYIYKSLIGNSKKMGKVELAMNLLKEMKLSDSKLAGLKDFKRRK 383
           ALTLLREMKL++I PSSYIYKSLI NS K+GKVELAMNLLKEMKLS SKLAG KDFKR++
Sbjct: 308 ALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKR 367

[Close]

BLAST of CcUC01G013780.1 vs. NCBI nr
Match: XP_022964991.1 (pentatricopeptide repeat-containing protein At1g11900-like [Cucurbita moschata])

HSP 1 Score: 567.0 bits (1460), Expect = 1.2e-157
Identity = 297/359 (82.73%), Postives = 319/359 (88.86%), Query Frame = 0


Query: 25  LLSTRNLLYYSYANSIACIPVSNSQIWPLYAIKRLSHQSSTTNISPDEVKVGDEVLNQII 84
           LLS RN+L+YSY NSI  +PV N Q W LYAI+R  HQ STTNISPDE KV DEVLNQI 
Sbjct: 9   LLSARNVLHYSYTNSITSVPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVEDEVLNQIT 68

Query: 85  TPRENVSRCSHETFDTCIDKMCQSGNVAAAAQ-LKSLCDRKISLSPSKAYDMVFLAASER 144
             REN S CSHETFD CIDKMC+S N+ AAAQ LKS CDRKISLS SKAYDMV LAASER
Sbjct: 69  ATRENASMCSHETFDICIDKMCRSDNLTAAAQLLKSSCDRKISLSSSKAYDMVLLAASER 128

Query: 145 GDITLLCQVFKDYLVSCKSLSSTAYMNFAKAFTTTNDSSKLLEFVKEIIEMRFPNCIVIN 204
           GD TLLCQVFKD LVS K LSST+YMNFAKAF  T+DSSKLLE+VKEIIEM FPN +VIN
Sbjct: 129 GDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVIN 188

Query: 205 RIIFAFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRLNELLHIFVSMKED 264
           RIIFAFS+CREIDKALQIFNQMKLLS RPDLYTYNIILD LGRAGR++E+LH+FVSMKED
Sbjct: 189 RIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKED 248

Query: 265 GIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRVEPDLLTYTALIESFGRSGNIEEA 324
           GIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMR+EPDLLTYTALIESFGRSGN+EEA
Sbjct: 249 GIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEA 308

Query: 325 LTLLREMKLRNICPSSYIYKSLIGNSKKMGKVELAMNLLKEMKLSDSKLAGLKDFKRRK 383
           LTLLREMKL++I PSSYIYKSLI NS K+GKVELAMNLLKEMKLS SKLAG KDFKR++
Sbjct: 309 LTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKR 367

[Close]

BLAST of CcUC01G013780.1 vs. ExPASy Swiss-Prot
Match: Q5BIV3 (Pentatricopeptide repeat-containing protein At1g11900 OS=Arabidopsis thaliana OX=3702 GN=At1g11900 PE=2 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 2.9e-61
Identity = 138/314 (43.95%), Postives = 204/314 (64.97%), Query Frame = 0


Query: 77  DEVLNQIITPRENVSR-CSHETFDTCIDKMCQSGNVAAAAQ-LKSLCDRKISLSPSKAYD 136
           +E+L +I+   E+ S+  S   +   ++K  + GN++ A   L+SL ++ I L P   + 
Sbjct: 51  EELLKKIVNHSESGSKIISKIDYTNLVEKFTRDGNLSGAYDLLQSLQEKNICL-PISVFK 110

Query: 137 MVFLAASERGDITLLCQVFKDYLV--SCKSLSSTAYMNFAKAFTTTNDSSKLLEFVKEII 196
            +  AA E  D+ L C+VF++ L+    + LSS  Y+N A+AF  T+D + L   +KEI 
Sbjct: 111 NLLAAAGELNDMKLSCRVFREVLILPGKEPLSSDCYLNLARAFINTDDCTYLTSLLKEIS 170

Query: 197 EMRFP-NCIVINRIIFAFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRLN 256
           E   P   IV+NRIIFAF++ R+IDK L I  +MK   C+PD+ TYN +LD+LGRAG +N
Sbjct: 171 ESSLPYRLIVMNRIIFAFAETRQIDKVLMILKEMKEWECKPDVITYNSVLDILGRAGLVN 230

Query: 257 ELLHIFVSMKED-GIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRVEPDLLTYTAL 316
           E+L +  +MKED  ++ +I++YNT++N +RK  R DMCL+ + EMV   +EPDLL+YTA+
Sbjct: 231 EILGVLSTMKEDCSVSVNIITYNTVLNGMRKACRFDMCLVIYNEMVQCGIEPDLLSYTAV 290

Query: 317 IESFGRSGNIEEALTLLREMKLRNICPSSYIYKSLIGNSKKMGKVELAMNLLKEMKLSDS 376
           I+S GRSGN++E+L L  EMK R I PS Y+Y++LI   KK G  + A+ L  E+K + S
Sbjct: 291 IDSLGRSGNVKESLRLFDEMKQRQIRPSVYVYRALIDCLKKSGDFQSALQLSDELKNTSS 350

Query: 377 -KLAGLKDFKRRKR 384
             LAG +DFKR  R
Sbjct: 351 LDLAGPQDFKRHLR 363

[Close]

BLAST of CcUC01G013780.1 vs. ExPASy Swiss-Prot
Match: Q9FIX3 (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX=3702 GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.3e-24
Identity = 81/288 (28.12%), Postives = 134/288 (46.53%), Query Frame = 0


Query: 90  VSRCSHETFDTCIDKMCQSGNVAAAAQLKSLCDRKIS----------LSPSKAYDMVFLA 149
           V +   ET+D C         V  +    SL D+ +S          +    +Y+ V  A
Sbjct: 119 VFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDA 178

Query: 150 A-SERGDITLLCQVFKDYLVSCKSLSSTAYMNFAKAFT-TTNDSSKLLEFVKEIIEMRFP 209
               + +I+    VFK+ L S  S +   Y    + F    N    L  F K   +   P
Sbjct: 179 TIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLP 238

Query: 210 NCIVINRIIFAFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRLNELLHIF 269
           N +  N +I  + K R+ID   ++   M L    P+L +YN++++ L R GR+ E+  + 
Sbjct: 239 NVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVL 298

Query: 270 VSMKEDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRVEPDLLTYTALIESFGRS 329
             M   G + D V+YNTLI    K G     L+   EM+   + P ++TYT+LI S  ++
Sbjct: 299 TEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKA 358

Query: 330 GNIEEALTLLREMKLRNICPSSYIYKSLIGNSKKMGKVELAMNLLKEM 366
           GN+  A+  L +M++R +CP+   Y +L+    + G +  A  +L+EM
Sbjct: 359 GNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREM 406

[Close]

BLAST of CcUC01G013780.1 vs. ExPASy Swiss-Prot
Match: Q9ZU27 (Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g51965 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.9e-24
Identity = 67/235 (28.51%), Postives = 123/235 (52.34%), Query Frame = 0


Query: 133 YDMVFLAASERGDITLLCQVFKDYLVSCKSLSSTAYMNFAKAFTTTNDSSKLLEFVKEII 192
           Y  +    S+ G ++   ++F D           +YM+  ++      + + +E + +I 
Sbjct: 375 YSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIH 434

Query: 193 EMR-FPNCIVINRIIFAFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRLN 252
           E     + ++ N +  A  K ++I     +F +MK     PD++TYNI++   GR G ++
Sbjct: 435 EKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVD 494

Query: 253 ELLHIFVSMKEDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRVEPDLLTYTALI 312
           E ++IF  ++     PDI+SYN+LIN L K G +D   + F+EM    + PD++TY+ L+
Sbjct: 495 EAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLM 554

Query: 313 ESFGRSGNIEEALTLLREMKLRNICPSSYIYKSLIGNSKKMGKVELAMNLLKEMK 367
           E FG++  +E A +L  EM ++   P+   Y  L+   +K G+   A++L  +MK
Sbjct: 555 ECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMK 609

[Close]

BLAST of CcUC01G013780.1 vs. ExPASy Swiss-Prot
Match: P0C894 (Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana OX=3702 GN=At2g02150 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 7.1e-23
Identity = 70/221 (31.67%), Postives = 112/221 (50.68%), Query Frame = 0


Query: 150 CQVFKDYLVSCKSLSSTAYMNFAKAFTTTNDSSKLLEFVKEIIEMR----FPNCIVINRI 209
           C VF D L S +++    +  F   F+   D   L E ++   +M+    FP     N +
Sbjct: 175 CDVF-DVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGL 234

Query: 210 IFAFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRLNELLHIFVSMKEDGI 269
           +  F+K  + D   + F  M     RP ++TYNI++D + + G +     +F  MK  G+
Sbjct: 235 LHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGL 294

Query: 270 APDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRVEPDLLTYTALIESFGRSGNIEEALT 329
            PD V+YN++I+   KVGRLD  + +F EM  M  EPD++TY ALI  F + G +   L 
Sbjct: 295 VPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLE 354

Query: 330 LLREMKLRNICPSSYIYKSLIGNSKKMGKVELAMNLLKEMK 367
             REMK   + P+   Y +L+    K G ++ A+    +M+
Sbjct: 355 FYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMR 394

[Close]

BLAST of CcUC01G013780.1 vs. ExPASy Swiss-Prot
Match: Q9SIC9 (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g31400 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.1e-22
Identity = 57/164 (34.76%), Postives = 95/164 (57.93%), Query Frame = 0


Query: 203 NRIIFAFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRLNELLHIFVSMKE 262
           N ++ A  K  ++D A +I  QM +    P++ +Y+ ++D   +AGR +E L++F  M+ 
Sbjct: 378 NTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRY 437

Query: 263 DGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRVEPDLLTYTALIESFGRSGNIEE 322
            GIA D VSYNTL++   KVGR +  L   REM ++ ++ D++TY AL+  +G+ G  +E
Sbjct: 438 LGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDE 497

Query: 323 ALTLLREMKLRNICPSSYIYKSLIGNSKKMGKVELAMNLLKEMK 367
              +  EMK  ++ P+   Y +LI    K G  + AM + +E K
Sbjct: 498 VKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFK 541

[Close]

BLAST of CcUC01G013780.1 vs. ExPASy TrEMBL
Match: A0A6J1HYS7 (pentatricopeptide repeat-containing protein At1g11900 OS=Cucurbita maxima OX=3661 GN=LOC111469320 PE=4 SV=1)

HSP 1 Score: 575.5 bits (1482), Expect = 1.7e-160
Identity = 301/360 (83.61%), Postives = 323/360 (89.72%), Query Frame = 0


Query: 24  NLLSTRNLLYYSYANSIACIPVSNSQIWPLYAIKRLSHQSSTTNISPDEVKVGDEVLNQI 83
           +LLS RN+L+YSY NSI  IPV N Q W LYAI+R  HQSST NISPDE KV DEVLNQI
Sbjct: 8   SLLSARNVLHYSYTNSITSIPVGNPQNWLLYAIRRFGHQSSTNNISPDEEKVKDEVLNQI 67

Query: 84  ITPRENVSRCSHETFDTCIDKMCQSGNVAAAAQ-LKSLCDRKISLSPSKAYDMVFLAASE 143
              REN SRCSHETFD CIDKMC+SGN+ AAAQ LKSLCDRKISLS SKAYDMV LAASE
Sbjct: 68  TATRENASRCSHETFDVCIDKMCRSGNLTAAAQLLKSLCDRKISLSSSKAYDMVLLAASE 127

Query: 144 RGDITLLCQVFKDYLVSCKSLSSTAYMNFAKAFTTTNDSSKLLEFVKEIIEMRFPNCIVI 203
           RGD TLLCQVFKD LVS K LSST+YMNFAKAF  T+DSSKLLE+VKEIIEM FPN +VI
Sbjct: 128 RGDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVI 187

Query: 204 NRIIFAFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRLNELLHIFVSMKE 263
           NRIIFAFS+CREIDKALQIFNQMKLLS RPDLYTYNIILD LGRAGR++E+LH+FVSMKE
Sbjct: 188 NRIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKE 247

Query: 264 DGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRVEPDLLTYTALIESFGRSGNIEE 323
           DGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMR+EPDLLTYTALIESFGRSGN+EE
Sbjct: 248 DGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEE 307

Query: 324 ALTLLREMKLRNICPSSYIYKSLIGNSKKMGKVELAMNLLKEMKLSDSKLAGLKDFKRRK 383
           ALTLLREMKL++I PSSYIYKSLI NS K+GKVELAMNLLKEMKLS SKLAG KDFKR++
Sbjct: 308 ALTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKR 367

[Close]

BLAST of CcUC01G013780.1 vs. ExPASy TrEMBL
Match: A0A6J1HKH0 (pentatricopeptide repeat-containing protein At1g11900-like OS=Cucurbita moschata OX=3662 GN=LOC111464935 PE=4 SV=1)

HSP 1 Score: 567.0 bits (1460), Expect = 6.0e-158
Identity = 297/359 (82.73%), Postives = 319/359 (88.86%), Query Frame = 0


Query: 25  LLSTRNLLYYSYANSIACIPVSNSQIWPLYAIKRLSHQSSTTNISPDEVKVGDEVLNQII 84
           LLS RN+L+YSY NSI  +PV N Q W LYAI+R  HQ STTNISPDE KV DEVLNQI 
Sbjct: 9   LLSARNVLHYSYTNSITSVPVGNPQNWLLYAIRRFGHQPSTTNISPDEEKVEDEVLNQIT 68

Query: 85  TPRENVSRCSHETFDTCIDKMCQSGNVAAAAQ-LKSLCDRKISLSPSKAYDMVFLAASER 144
             REN S CSHETFD CIDKMC+S N+ AAAQ LKS CDRKISLS SKAYDMV LAASER
Sbjct: 69  ATRENASMCSHETFDICIDKMCRSDNLTAAAQLLKSSCDRKISLSSSKAYDMVLLAASER 128

Query: 145 GDITLLCQVFKDYLVSCKSLSSTAYMNFAKAFTTTNDSSKLLEFVKEIIEMRFPNCIVIN 204
           GD TLLCQVFKD LVS K LSST+YMNFAKAF  T+DSSKLLE+VKEIIEM FPN +VIN
Sbjct: 129 GDTTLLCQVFKDSLVSRKPLSSTSYMNFAKAFARTDDSSKLLEYVKEIIEMTFPNFLVIN 188

Query: 205 RIIFAFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRLNELLHIFVSMKED 264
           RIIFAFS+CREIDKALQIFNQMKLLS RPDLYTYNIILD LGRAGR++E+LH+FVSMKED
Sbjct: 189 RIIFAFSECREIDKALQIFNQMKLLSYRPDLYTYNIILDALGRAGRMDEILHMFVSMKED 248

Query: 265 GIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRVEPDLLTYTALIESFGRSGNIEEA 324
           GIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMR+EPDLLTYTALIESFGRSGN+EEA
Sbjct: 249 GIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRIEPDLLTYTALIESFGRSGNVEEA 308

Query: 325 LTLLREMKLRNICPSSYIYKSLIGNSKKMGKVELAMNLLKEMKLSDSKLAGLKDFKRRK 383
           LTLLREMKL++I PSSYIYKSLI NS K+GKVELAMNLLKEMKLS SKLAG KDFKR++
Sbjct: 309 LTLLREMKLKHIRPSSYIYKSLISNSMKIGKVELAMNLLKEMKLSYSKLAGPKDFKRKR 367

[Close]

BLAST of CcUC01G013780.1 vs. ExPASy TrEMBL
Match: A0A5D3DB98 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00260 PE=4 SV=1)

HSP 1 Score: 565.5 bits (1456), Expect = 1.7e-157
Identity = 305/418 (72.97%), Postives = 333/418 (79.67%), Query Frame = 0


Query: 1   MVRATFPFTCFFDFSSGRSCQFMNLLS-----TRNLLYY--------------------- 60
           MVR T PFTC FDFSSGR C+F NLLS     T  +L+                      
Sbjct: 1   MVRTTSPFTCIFDFSSGRLCRFTNLLSIGIFCTTRMLFKVDGCVTMSDLEFIAIEILASG 60

Query: 61  --------SYANSIACIPVSNSQIWPLYAIKRLSHQSSTTNISPDEVKVGDEVLNQIITP 120
                      N IA IPV NSQIWPLYAIK  SHQSS+TNISPDEVKVGDEVLNQII P
Sbjct: 61  LLMIQSTPLRINRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEVLNQIIAP 120

Query: 121 RENVSRCSHETFDTCIDKMCQSGNVAAAAQ-LKSLCDRKISLSPSKAYDMVFLAASERGD 180
           REN S CSHE  D CIDK+C  G++AAAAQ LKSLC+ KISL+ SKAYDMV LAASERGD
Sbjct: 121 RENASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLLAASERGD 180

Query: 181 ITLLCQVFKDYLVSCKSLSSTAYMNFAKAFTTTNDSSKLLEFVKEIIEMRFPNCIVINRI 240
             LLCQVFK  +VSCKSLSS +YM+FA+AFT TNDSSKLLE VKEI+E+   NC VINRI
Sbjct: 181 TPLLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQNCSVINRI 240

Query: 241 IFAFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRLNELLHIFVSMKEDGI 300
           IFAFSKCREIDKA QIFNQMK LSC PDLYTYNI+LDMLGRAGR+NE+LH+FVSMK++GI
Sbjct: 241 IFAFSKCREIDKAFQIFNQMKCLSCTPDLYTYNIVLDMLGRAGRVNEILHLFVSMKDEGI 300

Query: 301 APDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRVEPDLLTYTALIESFGRSGNIEEALT 360
           APDIVSYNTLINSLRKVGRLD+ LIYFREMVAM ++PDLLTYTALIESFGR GNIEEALT
Sbjct: 301 APDIVSYNTLINSLRKVGRLDISLIYFREMVAMGIKPDLLTYTALIESFGRFGNIEEALT 360

Query: 361 LLREMKLRNICPSSYIYKSLIGNSKKMGKVELAMNLLKEMKLSDSKLAGLKDFKRRKR 384
           LL+EMKL+ ICPSSYIYKSLI NSKKMGKVELA NLL EMKLS+SKLA  +DFKRRKR
Sbjct: 361 LLKEMKLKKICPSSYIYKSLIANSKKMGKVELATNLLNEMKLSESKLARPEDFKRRKR 418

[Close]

BLAST of CcUC01G013780.1 vs. ExPASy TrEMBL
Match: A0A1S3CIJ8 (pentatricopeptide repeat-containing protein At1g11900 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500823 PE=4 SV=1)

HSP 1 Score: 559.3 bits (1440), Expect = 1.2e-155
Identity = 290/356 (81.46%), Postives = 316/356 (88.76%), Query Frame = 0


Query: 29  RNLLYYSYANSIACIPVSNSQIWPLYAIKRLSHQSSTTNISPDEVKVGDEVLNQIITPRE 88
           RNLL+YSYAN IA IPV NSQIWPLYAIK  SHQSS+TNISPDEVKVGDEVLNQII PRE
Sbjct: 10  RNLLHYSYANRIASIPVGNSQIWPLYAIKCFSHQSSSTNISPDEVKVGDEVLNQIIAPRE 69

Query: 89  NVSRCSHETFDTCIDKMCQSGNVAAAAQ-LKSLCDRKISLSPSKAYDMVFLAASERGDIT 148
           N S CSHE  D CIDK+C  G++AAAAQ LKSLC+ KISL+ SKAYDMV LAASERGD  
Sbjct: 70  NASNCSHEIVDACIDKICGLGHLAAAAQLLKSLCNEKISLNSSKAYDMVLLAASERGDTP 129

Query: 149 LLCQVFKDYLVSCKSLSSTAYMNFAKAFTTTNDSSKLLEFVKEIIEMRFPNCIVINRIIF 208
           LLCQVFK  +VSCKSLSS +YM+FA+AFT TNDSSKLLE VKEI+E+   NC VINRIIF
Sbjct: 130 LLCQVFKVAVVSCKSLSSASYMSFARAFTKTNDSSKLLECVKEIVEVTSQNCSVINRIIF 189

Query: 209 AFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRLNELLHIFVSMKEDGIAP 268
           AFSKCREIDKA QIFNQMK LSC PDLYTYNI+LDMLGRAGR+NE+LH+FVSMK++GIAP
Sbjct: 190 AFSKCREIDKAFQIFNQMKCLSCTPDLYTYNIVLDMLGRAGRVNEILHLFVSMKDEGIAP 249

Query: 269 DIVSYNTLINSLRKVGRLDMCLIYFREMVAMRVEPDLLTYTALIESFGRSGNIEEALTLL 328
           DIVSYNTLINSLRKVGRLD+ LIYFREMVAM ++PDLLTYTALIESFGR GNIEEALTLL
Sbjct: 250 DIVSYNTLINSLRKVGRLDISLIYFREMVAMGIKPDLLTYTALIESFGRFGNIEEALTLL 309

Query: 329 REMKLRNICPSSYIYKSLIGNSKKMGKVELAMNLLKEMKLSDSKLAGLKDFKRRKR 384
           +EMKL+ ICPSSYIYKSLI NSKKMGKVELA NLL EMKLS+SKLA  +DFKRRKR
Sbjct: 310 KEMKLKKICPSSYIYKSLIANSKKMGKVELATNLLNEMKLSESKLARPEDFKRRKR 365

[Close]

BLAST of CcUC01G013780.1 vs. ExPASy TrEMBL
Match: A0A6J1D2E8 (pentatricopeptide repeat-containing protein At1g11900-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016680 PE=3 SV=1)

HSP 1 Score: 557.8 bits (1436), Expect = 3.6e-155
Identity = 294/385 (76.36%), Postives = 325/385 (84.42%), Query Frame = 0


Query: 2   VRATFPFTCFFDFSSGRSCQFMNLLSTRNLLYYSYANSIACIPVSNSQIWPLYAI--KRL 61
           VR    F+   DFSSG SC+F NL STR +L+Y Y N IA  PV + QIW  +A   KR 
Sbjct: 18  VRTASAFSYISDFSSGGSCRFRNLPSTRKVLHYPYTNCIASFPVGDPQIWLFFANMGKRF 77

Query: 62  SHQSSTTNISPDEVKVGDEVLNQIITPRENVSRCSHETFDTCIDKMCQSGNVAAAAQ-LK 121
           SHQS  T+ SPDE KV DEVLNQI+  R+N SR SHETFD CI KMC+SGN+AAAAQ LK
Sbjct: 78  SHQSYPTDTSPDEEKVIDEVLNQIVATRDNASRSSHETFDACIYKMCRSGNLAAAAQLLK 137

Query: 122 SLCDRKISLSPSKAYDMVFLAASERGDITLLCQVFKDYLVSCKSLSSTAYMNFAKAFTTT 181
           SLCD KISLS SKAYDMV LAASERGD +L CQVFKD LVSCKSLSS  YMN AKAF +T
Sbjct: 138 SLCDGKISLSASKAYDMVLLAASERGDTSLFCQVFKDCLVSCKSLSSATYMNLAKAFIST 197

Query: 182 NDSSKLLEFVKEIIEMRFPNCIVINRIIFAFSKCREIDKALQIFNQMKLLSCRPDLYTYN 241
           ND  KLLE+VKE+IEM FPN IVIN+IIFAFSKCREI+KAL+IFNQMKLLSC+PDLYTYN
Sbjct: 198 NDVGKLLEYVKEVIEMTFPNLIVINKIIFAFSKCREIEKALRIFNQMKLLSCKPDLYTYN 257

Query: 242 IILDMLGRAGRLNELLHIFVSMKEDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAM 301
           IILDMLGRAGR++E+LH+FVSMKE GIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAM
Sbjct: 258 IILDMLGRAGRMDEILHMFVSMKEAGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAM 317

Query: 302 RVEPDLLTYTALIESFGRSGNIEEALTLLREMKLRNICPSSYIYKSLIGNSKKMGKVELA 361
           R+EPDLLTYTA+IESFGRSGNIEEAL LLREMKL+N+ PS+YIYKSLI NS K+GKVELA
Sbjct: 318 RIEPDLLTYTAMIESFGRSGNIEEALGLLREMKLKNVYPSNYIYKSLISNSMKIGKVELA 377

Query: 362 MNLLKEMKLSDSKLAGLKDFKRRKR 384
           M+LL E+KLS S LA  KDFKRRKR
Sbjct: 378 MSLLNELKLSGSNLANPKDFKRRKR 402

[Close]

BLAST of CcUC01G013780.1 vs. TAIR 10
Match: AT1G11900.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 237.3 bits (604), Expect = 2.1e-62
Identity = 138/314 (43.95%), Postives = 204/314 (64.97%), Query Frame = 0


Query: 77  DEVLNQIITPRENVSR-CSHETFDTCIDKMCQSGNVAAAAQ-LKSLCDRKISLSPSKAYD 136
           +E+L +I+   E+ S+  S   +   ++K  + GN++ A   L+SL ++ I L P   + 
Sbjct: 51  EELLKKIVNHSESGSKIISKIDYTNLVEKFTRDGNLSGAYDLLQSLQEKNICL-PISVFK 110

Query: 137 MVFLAASERGDITLLCQVFKDYLV--SCKSLSSTAYMNFAKAFTTTNDSSKLLEFVKEII 196
            +  AA E  D+ L C+VF++ L+    + LSS  Y+N A+AF  T+D + L   +KEI 
Sbjct: 111 NLLAAAGELNDMKLSCRVFREVLILPGKEPLSSDCYLNLARAFINTDDCTYLTSLLKEIS 170

Query: 197 EMRFP-NCIVINRIIFAFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRLN 256
           E   P   IV+NRIIFAF++ R+IDK L I  +MK   C+PD+ TYN +LD+LGRAG +N
Sbjct: 171 ESSLPYRLIVMNRIIFAFAETRQIDKVLMILKEMKEWECKPDVITYNSVLDILGRAGLVN 230

Query: 257 ELLHIFVSMKED-GIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRVEPDLLTYTAL 316
           E+L +  +MKED  ++ +I++YNT++N +RK  R DMCL+ + EMV   +EPDLL+YTA+
Sbjct: 231 EILGVLSTMKEDCSVSVNIITYNTVLNGMRKACRFDMCLVIYNEMVQCGIEPDLLSYTAV 290

Query: 317 IESFGRSGNIEEALTLLREMKLRNICPSSYIYKSLIGNSKKMGKVELAMNLLKEMKLSDS 376
           I+S GRSGN++E+L L  EMK R I PS Y+Y++LI   KK G  + A+ L  E+K + S
Sbjct: 291 IDSLGRSGNVKESLRLFDEMKQRQIRPSVYVYRALIDCLKKSGDFQSALQLSDELKNTSS 350

Query: 377 -KLAGLKDFKRRKR 384
             LAG +DFKR  R
Sbjct: 351 LDLAGPQDFKRHLR 363

[Close]

BLAST of CcUC01G013780.1 vs. TAIR 10
Match: AT5G39710.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 115.5 bits (288), Expect = 9.1e-26
Identity = 81/288 (28.12%), Postives = 134/288 (46.53%), Query Frame = 0


Query: 90  VSRCSHETFDTCIDKMCQSGNVAAAAQLKSLCDRKIS----------LSPSKAYDMVFLA 149
           V +   ET+D C         V  +    SL D+ +S          +    +Y+ V  A
Sbjct: 119 VFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDA 178

Query: 150 A-SERGDITLLCQVFKDYLVSCKSLSSTAYMNFAKAFT-TTNDSSKLLEFVKEIIEMRFP 209
               + +I+    VFK+ L S  S +   Y    + F    N    L  F K   +   P
Sbjct: 179 TIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLP 238

Query: 210 NCIVINRIIFAFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRLNELLHIF 269
           N +  N +I  + K R+ID   ++   M L    P+L +YN++++ L R GR+ E+  + 
Sbjct: 239 NVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVL 298

Query: 270 VSMKEDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRVEPDLLTYTALIESFGRS 329
             M   G + D V+YNTLI    K G     L+   EM+   + P ++TYT+LI S  ++
Sbjct: 299 TEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKA 358

Query: 330 GNIEEALTLLREMKLRNICPSSYIYKSLIGNSKKMGKVELAMNLLKEM 366
           GN+  A+  L +M++R +CP+   Y +L+    + G +  A  +L+EM
Sbjct: 359 GNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREM 406

[Close]

BLAST of CcUC01G013780.1 vs. TAIR 10
Match: AT1G51965.1 (ABA Overly-Sensitive 5 )

HSP 1 Score: 114.4 bits (285), Expect = 2.0e-25
Identity = 67/235 (28.51%), Postives = 123/235 (52.34%), Query Frame = 0


Query: 133 YDMVFLAASERGDITLLCQVFKDYLVSCKSLSSTAYMNFAKAFTTTNDSSKLLEFVKEII 192
           Y  +    S+ G ++   ++F D           +YM+  ++      + + +E + +I 
Sbjct: 375 YSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIH 434

Query: 193 EMR-FPNCIVINRIIFAFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRLN 252
           E     + ++ N +  A  K ++I     +F +MK     PD++TYNI++   GR G ++
Sbjct: 435 EKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVD 494

Query: 253 ELLHIFVSMKEDGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRVEPDLLTYTALI 312
           E ++IF  ++     PDI+SYN+LIN L K G +D   + F+EM    + PD++TY+ L+
Sbjct: 495 EAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLM 554

Query: 313 ESFGRSGNIEEALTLLREMKLRNICPSSYIYKSLIGNSKKMGKVELAMNLLKEMK 367
           E FG++  +E A +L  EM ++   P+   Y  L+   +K G+   A++L  +MK
Sbjct: 555 ECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMK 609

[Close]

BLAST of CcUC01G013780.1 vs. TAIR 10
Match: AT2G02150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 109.8 bits (273), Expect = 5.0e-24
Identity = 70/221 (31.67%), Postives = 112/221 (50.68%), Query Frame = 0


Query: 150 CQVFKDYLVSCKSLSSTAYMNFAKAFTTTNDSSKLLEFVKEIIEMR----FPNCIVINRI 209
           C VF D L S +++    +  F   F+   D   L E ++   +M+    FP     N +
Sbjct: 175 CDVF-DVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGL 234

Query: 210 IFAFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRLNELLHIFVSMKEDGI 269
           +  F+K  + D   + F  M     RP ++TYNI++D + + G +     +F  MK  G+
Sbjct: 235 LHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGL 294

Query: 270 APDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRVEPDLLTYTALIESFGRSGNIEEALT 329
            PD V+YN++I+   KVGRLD  + +F EM  M  EPD++TY ALI  F + G +   L 
Sbjct: 295 VPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLE 354

Query: 330 LLREMKLRNICPSSYIYKSLIGNSKKMGKVELAMNLLKEMK 367
             REMK   + P+   Y +L+    K G ++ A+    +M+
Sbjct: 355 FYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMR 394

[Close]

BLAST of CcUC01G013780.1 vs. TAIR 10
Match: AT2G31400.1 (genomes uncoupled 1 )

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-23
Identity = 57/164 (34.76%), Postives = 95/164 (57.93%), Query Frame = 0


Query: 203 NRIIFAFSKCREIDKALQIFNQMKLLSCRPDLYTYNIILDMLGRAGRLNELLHIFVSMKE 262
           N ++ A  K  ++D A +I  QM +    P++ +Y+ ++D   +AGR +E L++F  M+ 
Sbjct: 378 NTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRY 437

Query: 263 DGIAPDIVSYNTLINSLRKVGRLDMCLIYFREMVAMRVEPDLLTYTALIESFGRSGNIEE 322
            GIA D VSYNTL++   KVGR +  L   REM ++ ++ D++TY AL+  +G+ G  +E
Sbjct: 438 LGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDE 497

Query: 323 ALTLLREMKLRNICPSSYIYKSLIGNSKKMGKVELAMNLLKEMK 367
              +  EMK  ++ P+   Y +LI    K G  + AM + +E K
Sbjct: 498 VKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFK 541

The following BLAST results are available for this feature:

BLAST of CcUC01G013780.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893594.1	2.2e-167	86.76	LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g11900 [Beni...	[more]
XP_022970322.1	3.5e-160	83.61	pentatricopeptide repeat-containing protein At1g11900 [Cucurbita maxima]	[more]
KAG6583593.1	1.9e-158	83.01	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_023518970.1	7.2e-158	82.78	pentatricopeptide repeat-containing protein At1g11900 [Cucurbita pepo subsp. pep...	[more]
XP_022964991.1	1.2e-157	82.73	pentatricopeptide repeat-containing protein At1g11900-like [Cucurbita moschata]	[more]

BLAST of CcUC01G013780.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5BIV3	2.9e-61	43.95	Pentatricopeptide repeat-containing protein At1g11900 OS=Arabidopsis thaliana OX...	[more]
Q9FIX3	1.3e-24	28.13	Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX...	[more]
Q9ZU27	2.9e-24	28.51	Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidop...	[more]
P0C894	7.1e-23	31.67	Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis th...	[more]
Q9SIC9	2.1e-22	34.76	Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidop...	[more]

BLAST of CcUC01G013780.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HYS7	1.7e-160	83.61	pentatricopeptide repeat-containing protein At1g11900 OS=Cucurbita maxima OX=366...	[more]
A0A6J1HKH0	6.0e-158	82.73	pentatricopeptide repeat-containing protein At1g11900-like OS=Cucurbita moschata...	[more]
A0A5D3DB98	1.7e-157	72.97	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CIJ8	1.2e-155	81.46	pentatricopeptide repeat-containing protein At1g11900 isoform X1 OS=Cucumis melo...	[more]
A0A6J1D2E8	3.6e-155	76.36	pentatricopeptide repeat-containing protein At1g11900-like isoform X1 OS=Momordi...	[more]

BLAST of CcUC01G013780.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11900.1	2.1e-62	43.95	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G39710.1	9.1e-26	28.13	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G51965.1	2.0e-25	28.51	ABA Overly-Sensitive 5	[more]
AT2G02150.1	5.0e-24	31.67	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G31400.1	1.5e-23	34.76	genomes uncoupled 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033443	Pentacotripeptide-repeat region of PRORP	PFAM	PF17177	PPR_long	coord: 210..364 e-value: 8.0E-12 score: 44.9
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 143..287 e-value: 6.0E-29 score: 102.7
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 296..370 e-value: 4.1E-17 score: 64.3
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 306..338 e-value: 3.5E-9 score: 34.3 coord: 235..269 e-value: 1.5E-8 score: 32.3 coord: 270..303 e-value: 1.9E-6 score: 25.7 coord: 202..233 e-value: 1.9E-5 score: 22.6
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 268..302 score: 11.191545
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 233..267 score: 12.276713
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 198..232 score: 9.602157
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 303..337 score: 12.474017
None	No IPR available	PANTHER	PTHR47942:SF17	OS05G0481800 PROTEIN	coord: 30..383
None	No IPR available	PANTHER	PTHR47942	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 30..383
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 167..363

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC01G013780	CcUC01G013780	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC01G013780.1-exon	CcUC01G013780.1-exon-CicolChr01:26411031..26411120	exon
CcUC01G013780.1-exon	CcUC01G013780.1-exon-CicolChr01:26414221..26415361	exon
CcUC01G013780.1-exon	CcUC01G013780.1-exon-CicolChr01:26416422..26416734	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC01G013780.1-three_prime_utr	CcUC01G013780.1-three_prime_utr-CicolChr01:26411031..26411120	three_prime_UTR
CcUC01G013780.1-three_prime_utr	CcUC01G013780.1-three_prime_utr-CicolChr01:26414221..26414320	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC01G013780.1-cds	CcUC01G013780.1-cds-CicolChr01:26414321..26415361	CDS
CcUC01G013780.1-cds	CcUC01G013780.1-cds-CicolChr01:26416422..26416532	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC01G013780.1-five_prime_utr	CcUC01G013780.1-five_prime_utr-CicolChr01:26416533..26416734	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC01G013780.1	CcUC01G013780.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding