CcUC01G009940.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC01G009940.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr01: 12951661 .. 12951957 (-)
Sequence length	297
RNA-Seq Expression	CcUC01G009940.1
Synteny	CcUC01G009940.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTGAGAAGCTACTCAAACCCAGAGTACATTAGGGCACCATACTCTGGGTTTGAGTCGGAACTAGAGTCATGCGTGGTTGGGCACTTCAGTGGTGCAAGTGGTGGGTTGCAGGTCGAGTTGTCGTCGGTGGTGGGGAAGCCTGAGGTGGAGTCGCCGGAAGTGAGATTTGAAATTCCATGTCGGTTCGAACAAGAAAGTCGTAGAGGCGGCCTCCAGATGGAAGAGACAAGAGAGAGGGCTCGAGCCGTCGAGGATGACAACAATAGTGTGAGCACGGGCAGAGGGTTGTGA

mRNA sequence

ATGAATTTGAGAAGCTACTCAAACCCAGAGTACATTAGGGCACCATACTCTGGGTTTGAGTCGGAACTAGAGTCATGCGTGGTTGGGCACTTCAGTGGTGCAAGTGGTGGGTTGCAGGTCGAGTTGTCGTCGGTGGTGGGGAAGCCTGAGGTGGAGTCGCCGGAAGTGAGATTTGAAATTCCATGTCGGTTCGAACAAGAAAGTCGTAGAGGCGGCCTCCAGATGGAAGAGACAAGAGAGAGGGCTCGAGCCGTCGAGGATGACAACAATAGTGTGAGCACGGGCAGAGGGTTGTGA

Coding sequence (CDS)

ATGAATTTGAGAAGCTACTCAAACCCAGAGTACATTAGGGCACCATACTCTGGGTTTGAGTCGGAACTAGAGTCATGCGTGGTTGGGCACTTCAGTGGTGCAAGTGGTGGGTTGCAGGTCGAGTTGTCGTCGGTGGTGGGGAAGCCTGAGGTGGAGTCGCCGGAAGTGAGATTTGAAATTCCATGTCGGTTCGAACAAGAAAGTCGTAGAGGCGGCCTCCAGATGGAAGAGACAAGAGAGAGGGCTCGAGCCGTCGAGGATGACAACAATAGTGTGAGCACGGGCAGAGGGTTGTGA

Protein sequence

MNLRSYSNPEYIRAPYSGFESELESCVVGHFSGASGGLQVELSSVVGKPEVESPEVRFEIPCRFEQESRRGGLQMEETRERARAVEDDNNSVSTGRGL

Homology

The following BLAST results are available for this feature:

BLAST of CcUC01G009940.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC01G009940.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC01G009940.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC01G009940.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..98

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC01G009940	CcUC01G009940	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC01G009940.1-exon	CcUC01G009940.1-exon-CicolChr01:12951661..12951957	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC01G009940.1-cds	CcUC01G009940.1-cds-CicolChr01:12951661..12951957	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC01G009940.1	CcUC01G009940.1-protein	polypeptide