Carg28228-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg28228-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Protein of unknown function, DUF584
Location	Carg_Chr12: 6885848 .. 6886330 (+)
Sequence length	483
RNA-Seq Expression	Carg28228-RA
Synteny	Carg28228-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACTGGTAAGAGCTATTTCTCTCGCTCCAAGTTCCGCTTTCTTCCCGCTAGCGAAGTACCCAACCACCGTACCGGCTGCGGCGACTTCGTCTTCGAAATCGACGAATCCGACCTCTTCAACTCCCCGCGCGGCGGCGGAGTTTCCAAAACGCGAATCTCCAAGCGGATATCGGCGAAGGTAGTGGACGCTGGAGACGGAAGCGTAACGACAGTGGCGGCGTTGCCGGTTAACATCCCGGACTGGTCGAAGATCCTGAGAAACGAGTACATCGAGAATCGGAGAGATAGGTTCGAGGAAGAGGCGAACTGCGGCGATGAGTTGGAGAACGATCGATTTAGGGTTCCGCCGCACGAGTTTGTGGCGAGGACGAGGATGGCGTCGTTTTCCGTTGAGGAAGGGATTGGAAGAACGTTGAAAGGGAGAGATCTGAGTAGAGTTCGAGATGCGATTTGGCTAAAAACTGGATTCGAAGATTGA

mRNA sequence

ATGGCGACTGGTAAGAGCTATTTCTCTCGCTCCAAGTTCCGCTTTCTTCCCGCTAGCGAAGTACCCAACCACCGTACCGGCTGCGGCGACTTCGTCTTCGAAATCGACGAATCCGACCTCTTCAACTCCCCGCGCGGCGGCGGAGTTTCCAAAACGCGAATCTCCAAGCGGATATCGGCGAAGGTAGTGGACGCTGGAGACGGAAGCGTAACGACAGTGGCGGCGTTGCCGGTTAACATCCCGGACTGGTCGAAGATCCTGAGAAACGAGTACATCGAGAATCGGAGAGATAGGTTCGAGGAAGAGGCGAACTGCGGCGATGAGTTGGAGAACGATCGATTTAGGGTTCCGCCGCACGAGTTTGTGGCGAGGACGAGGATGGCGTCGTTTTCCGTTGAGGAAGGGATTGGAAGAACGTTGAAAGGGAGAGATCTGAGTAGAGTTCGAGATGCGATTTGGCTAAAAACTGGATTCGAAGATTGA

Coding sequence (CDS)

ATGGCGACTGGTAAGAGCTATTTCTCTCGCTCCAAGTTCCGCTTTCTTCCCGCTAGCGAAGTACCCAACCACCGTACCGGCTGCGGCGACTTCGTCTTCGAAATCGACGAATCCGACCTCTTCAACTCCCCGCGCGGCGGCGGAGTTTCCAAAACGCGAATCTCCAAGCGGATATCGGCGAAGGTAGTGGACGCTGGAGACGGAAGCGTAACGACAGTGGCGGCGTTGCCGGTTAACATCCCGGACTGGTCGAAGATCCTGAGAAACGAGTACATCGAGAATCGGAGAGATAGGTTCGAGGAAGAGGCGAACTGCGGCGATGAGTTGGAGAACGATCGATTTAGGGTTCCGCCGCACGAGTTTGTGGCGAGGACGAGGATGGCGTCGTTTTCCGTTGAGGAAGGGATTGGAAGAACGTTGAAAGGGAGAGATCTGAGTAGAGTTCGAGATGCGATTTGGCTAAAAACTGGATTCGAAGATTGA

Protein sequence

MATGKSYFSRSKFRFLPASEVPNHRTGCGDFVFEIDESDLFNSPRGGGVSKTRISKRISAKVVDAGDGSVTTVAALPVNIPDWSKILRNEYIENRRDRFEEEANCGDELENDRFRVPPHEFVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED

Homology

[Close]

BLAST of Carg28228-RA vs. NCBI nr
Match: KAG6586019.1 (hypothetical protein SDJN03_18752, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020795.1 hypothetical protein SDJN02_17483, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 327.0 bits (837), Expect = 9.0e-86
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MATGKSYFSRSKFRFLPASEVPNHRTGCGDFVFEIDESDLFNSPRGGGVSKTRISKRISA 60
           MATGKSYFSRSKFRFLPASEVPNHRTGCGDFVFEIDESDLFNSPRGGGVSKTRISKRISA
Sbjct: 1   MATGKSYFSRSKFRFLPASEVPNHRTGCGDFVFEIDESDLFNSPRGGGVSKTRISKRISA 60

Query: 61  KVVDAGDGSVTTVAALPVNIPDWSKILRNEYIENRRDRFEEEANCGDELENDRFRVPPHE 120
           KVVDAGDGSVTTVAALPVNIPDWSKILRNEYIENRRDRFEEEANCGDELENDRFRVPPHE
Sbjct: 61  KVVDAGDGSVTTVAALPVNIPDWSKILRNEYIENRRDRFEEEANCGDELENDRFRVPPHE 120

Query: 121 FVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED 161
           FVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED
Sbjct: 121 FVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED 160

[Close]

BLAST of Carg28228-RA vs. NCBI nr
Match: XP_022938325.1 (uncharacterized protein LOC111444460 [Cucurbita moschata])

HSP 1 Score: 324.3 bits (830), Expect = 5.8e-85
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MATGKSYFSRSKFRFLPASEVPNHRTGCGDFVFEIDESDLFNSPRGGGVSKTRISKRISA 60
           MATGKSYFSRSKFRFLPASEVPNHRTGCGDFVFEIDESDLFNSPRGGGVSKTRISK ISA
Sbjct: 1   MATGKSYFSRSKFRFLPASEVPNHRTGCGDFVFEIDESDLFNSPRGGGVSKTRISKPISA 60

Query: 61  KVVDAGDGSVTTVAALPVNIPDWSKILRNEYIENRRDRFEEEANCGDELENDRFRVPPHE 120
           KVVDAGDGSVTTVAALPVNIPDWSKILRNEYIENRRDRFEEEANCGDELENDRFRVPPHE
Sbjct: 61  KVVDAGDGSVTTVAALPVNIPDWSKILRNEYIENRRDRFEEEANCGDELENDRFRVPPHE 120

Query: 121 FVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED 161
           FVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED
Sbjct: 121 FVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED 160

[Close]

BLAST of Carg28228-RA vs. NCBI nr
Match: XP_022969594.1 (uncharacterized protein LOC111468572 [Cucurbita maxima])

HSP 1 Score: 308.9 bits (790), Expect = 2.5e-80
Identity = 154/162 (95.06%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 1   MATGKSYFSRSKFRFLPASEVPNHR--TGCGDFVFEIDESDLFNSPRGGGVSKTRISKRI 60
           MATGKSY SRSKFRFLPASEVPNHR  TGCGDFVFEIDESDLFNSPRG GVSKTRISKRI
Sbjct: 1   MATGKSYSSRSKFRFLPASEVPNHRRSTGCGDFVFEIDESDLFNSPRGDGVSKTRISKRI 60

Query: 61  SAKVVDAGDGSVTTVAALPVNIPDWSKILRNEYIENRRDRFEEEANCGDELENDRFRVPP 120
           SAKVVDA DGSVTT AALPVNIPDWSKILRNEYIENRRDRFEEEANCGDELE DRFR+PP
Sbjct: 61  SAKVVDARDGSVTTAAALPVNIPDWSKILRNEYIENRRDRFEEEANCGDELEKDRFRIPP 120

Query: 121 HEFVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED 161
           HEFVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED
Sbjct: 121 HEFVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED 162

[Close]

BLAST of Carg28228-RA vs. NCBI nr
Match: XP_023536989.1 (uncharacterized protein LOC111798210 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257.3 bits (656), Expect = 8.7e-65
Identity = 128/135 (94.81%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 26  TGCGDFVFEIDESDLFNSPRGGGVSKTRISKRISAKVVDAGDGSVTTVAALPVNIPDWSK 85
           TG   FVFEIDESDLFNS RGGGVSK RISKRISAKVVDAGDGSVTT AALPVNIPDWSK
Sbjct: 3   TGKSYFVFEIDESDLFNSARGGGVSKARISKRISAKVVDAGDGSVTTAAALPVNIPDWSK 62

Query: 86  ILRNEYIENRRDRFEEEANCGDELENDRFRVPPHEFVARTRMASFSVEEGIGRTLKGRDL 145
           ILRNEYIENRRDRFEEEANCGDELE+DRFRVPPHEFVARTRMASFSVEEGIGRTLKGRDL
Sbjct: 63  ILRNEYIENRRDRFEEEANCGDELESDRFRVPPHEFVARTRMASFSVEEGIGRTLKGRDL 122

Query: 146 SRVRDAIWLKTGFED 161
           SRVRDAIWLKTGFED
Sbjct: 123 SRVRDAIWLKTGFED 137

[Close]

BLAST of Carg28228-RA vs. NCBI nr
Match: XP_038894808.1 (uncharacterized protein LOC120083221 [Benincasa hispida])

HSP 1 Score: 226.9 bits (577), Expect = 1.3e-55
Identity = 124/174 (71.26%), Postives = 138/174 (79.31%), Query Frame = 0


Query: 1   MATGKSYFSRSKFRFLPASEVPNHRTGC-GDFVFEIDESDLFNSPRGG-------GVSKT 60
           MATG+SYFSRSKFRFLPA + P+H   C GD VF+ DESDLFNSP  G         +KT
Sbjct: 1   MATGRSYFSRSKFRFLPAGDGPDH---CRGDAVFDFDESDLFNSPHSGTSPEFRRPATKT 60

Query: 61  RISKRISAKVVDAGDGSVTTV--AALPVNIPDWSKILRNEYIENRRDRF----EEEANCG 120
           RISKRIS  VVDAGD +VTTV  A+LPVNIPDWSKILRNEYIENRRD F    +E+ + G
Sbjct: 61  RISKRIS-PVVDAGDRNVTTVSAASLPVNIPDWSKILRNEYIENRRDNFDDDEDEDGDGG 120

Query: 121 DELENDRFRVPPHEFVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED 161
           D+ E  RFRVPPHEF+A+TR+ASFSV EGIGRTLKGRDLSRVRDAIW KTGFED
Sbjct: 121 DDFEEGRFRVPPHEFLAKTRIASFSVHEGIGRTLKGRDLSRVRDAIWQKTGFED 170

[Close]

BLAST of Carg28228-RA vs. ExPASy TrEMBL
Match: A0A6J1FJG2 (uncharacterized protein LOC111444460 OS=Cucurbita moschata OX=3662 GN=LOC111444460 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 2.8e-85
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MATGKSYFSRSKFRFLPASEVPNHRTGCGDFVFEIDESDLFNSPRGGGVSKTRISKRISA 60
           MATGKSYFSRSKFRFLPASEVPNHRTGCGDFVFEIDESDLFNSPRGGGVSKTRISK ISA
Sbjct: 1   MATGKSYFSRSKFRFLPASEVPNHRTGCGDFVFEIDESDLFNSPRGGGVSKTRISKPISA 60

Query: 61  KVVDAGDGSVTTVAALPVNIPDWSKILRNEYIENRRDRFEEEANCGDELENDRFRVPPHE 120
           KVVDAGDGSVTTVAALPVNIPDWSKILRNEYIENRRDRFEEEANCGDELENDRFRVPPHE
Sbjct: 61  KVVDAGDGSVTTVAALPVNIPDWSKILRNEYIENRRDRFEEEANCGDELENDRFRVPPHE 120

Query: 121 FVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED 161
           FVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED
Sbjct: 121 FVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED 160

[Close]

BLAST of Carg28228-RA vs. ExPASy TrEMBL
Match: A0A6J1I330 (uncharacterized protein LOC111468572 OS=Cucurbita maxima OX=3661 GN=LOC111468572 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.2e-80
Identity = 154/162 (95.06%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 1   MATGKSYFSRSKFRFLPASEVPNHR--TGCGDFVFEIDESDLFNSPRGGGVSKTRISKRI 60
           MATGKSY SRSKFRFLPASEVPNHR  TGCGDFVFEIDESDLFNSPRG GVSKTRISKRI
Sbjct: 1   MATGKSYSSRSKFRFLPASEVPNHRRSTGCGDFVFEIDESDLFNSPRGDGVSKTRISKRI 60

Query: 61  SAKVVDAGDGSVTTVAALPVNIPDWSKILRNEYIENRRDRFEEEANCGDELENDRFRVPP 120
           SAKVVDA DGSVTT AALPVNIPDWSKILRNEYIENRRDRFEEEANCGDELE DRFR+PP
Sbjct: 61  SAKVVDARDGSVTTAAALPVNIPDWSKILRNEYIENRRDRFEEEANCGDELEKDRFRIPP 120

Query: 121 HEFVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED 161
           HEFVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED
Sbjct: 121 HEFVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED 162

[Close]

BLAST of Carg28228-RA vs. ExPASy TrEMBL
Match: A0A1S3CH53 (uncharacterized protein LOC103500846 OS=Cucumis melo OX=3656 GN=LOC103500846 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 8.8e-55
Identity = 124/172 (72.09%), Postives = 134/172 (77.91%), Query Frame = 0


Query: 1   MATGKSYFSRSKFRFLPASEVPNHRTGC-GDFVFEIDESDLFNSPRGG-------GVSKT 60
           MATGKSYFSRSKFRFLPA + P+H   C  D  F+ DESDLFNSP  G         SK+
Sbjct: 1   MATGKSYFSRSKFRFLPAGDGPDH---CRSDAAFDFDESDLFNSPHSGTSPEFRRPASKS 60

Query: 61  RISKRISAKVVDAGDGSVTTV--AALPVNIPDWSKILRNEYIENRRDRFEEE--ANCGDE 120
           RISKRIS   VD GD SVTTV  A+LPVNIPDWSKILRNEYIENRRD FE+E   + GDE
Sbjct: 61  RISKRISP--VDVGDRSVTTVSAASLPVNIPDWSKILRNEYIENRRDDFEDEDGDDDGDE 120

Query: 121 LENDRFRVPPHEFVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED 161
            E  RFRVPPHEF+A+TR+ASFSV EGIGRTLKGRDLSRVRDAIW KTGFED
Sbjct: 121 FEEKRFRVPPHEFLAKTRIASFSVHEGIGRTLKGRDLSRVRDAIWQKTGFED 167

[Close]

BLAST of Carg28228-RA vs. ExPASy TrEMBL
Match: A0A0A0LSF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132110 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.8e-53
Identity = 120/171 (70.18%), Postives = 132/171 (77.19%), Query Frame = 0


Query: 1   MATGKSYFSRSKFRFLPASEVPNHRTGCGDFVFEIDESDLFNSPRGG-------GVSKTR 60
           MATGKSYFSRSKFRFL   + P+H     D  F+ DESDLFNSP  G         SK+R
Sbjct: 1   MATGKSYFSRSKFRFLSPGDGPDHHR--NDAAFDFDESDLFNSPHSGTSPEFRRPASKSR 60

Query: 61  ISKRISAKVVDAGDGSVTTV--AALPVNIPDWSKILRNEYIENRRDRFEEE--ANCGDEL 120
           ISKRIS   VD GD SVTTV  A+LPVNIPDWSKILRNEYI+NRRD FE+E   + GDE+
Sbjct: 61  ISKRISP--VDVGDRSVTTVSAASLPVNIPDWSKILRNEYIDNRRDDFEDEDGDDEGDEV 120

Query: 121 ENDRFRVPPHEFVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED 161
           E  RFRVPPHEF+A+TR+ASFSV EGIGRTLKGRDLSRVRDAIW KTGFED
Sbjct: 121 EEKRFRVPPHEFLAKTRIASFSVHEGIGRTLKGRDLSRVRDAIWQKTGFED 167

[Close]

BLAST of Carg28228-RA vs. ExPASy TrEMBL
Match: A0A6J1I3L6 (uncharacterized protein LOC111469336 OS=Cucurbita maxima OX=3661 GN=LOC111469336 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.4e-52
Identity = 119/177 (67.23%), Postives = 135/177 (76.27%), Query Frame = 0


Query: 1   MATGKSYFSRSKFRFLPASEVPNHRTGCGDFVFEIDESDLFNSPRGG-------GVSKTR 60
           MATG +YFSRSKFRFLP ++ P+HR    D VFE+DESDLFNSPR          VSK+R
Sbjct: 1   MATGNTYFSRSKFRFLPTADGPDHRR--TDSVFELDESDLFNSPRSSASPEFRRSVSKSR 60

Query: 61  ISKRISAKVVDAGDGSVTTV--AALPVNIPDWSKILRNEYIENRRDRFEEEANCGDE--- 120
           ISKRISA  VD  D SV TV  A+LPVNIPDWSKILRNEYIENRRD F+++ +  DE   
Sbjct: 61  ISKRISA--VDDEDRSVKTVTAASLPVNIPDWSKILRNEYIENRRDGFDDDDDDDDEEDG 120

Query: 121 -----LENDRFRVPPHEFVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED 161
                 E+ RFRVPPHEF+A+TR+ASFSV EG+GRTLKGRDLSRVRDAIW KTGFED
Sbjct: 121 VGGCDFEDGRFRVPPHEFLAKTRIASFSVHEGVGRTLKGRDLSRVRDAIWQKTGFED 173

[Close]

BLAST of Carg28228-RA vs. TAIR 10
Match: AT5G60680.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 144.1 bits (362), Expect = 1.0e-34
Identity = 82/167 (49.10%), Postives = 107/167 (64.07%), Query Frame = 0


Query: 1   MATGKSYFSRSKFRFLPASEVPNHRTGCGDFVFEIDESDLFNSPRGGG-------VSKTR 60
           MATGKSY++R  +RFL  ++ P++ T   D   E DESDLFN              S  R
Sbjct: 1   MATGKSYYARPSYRFL-GTDQPSYFT-ASDSGLEFDESDLFNPIHSDSPDFCRKISSSVR 60

Query: 61  ISKRISAKVVDAGDGSVTTVAALPVNIPDWSKILRNEYIENRRDRFEEEANCGDELENDR 120
             K+ S +   +   S    ++LPVN+PDWSKILR EY +NRR   E+  +  D+ E+  
Sbjct: 61  SGKKSSNR--PSAASSAAAASSLPVNVPDWSKILRGEYRDNRRRSIEDNDDDDDDNEDGG 120

Query: 121 FRVPPHEFVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED 161
             +PPHEF+A+TRMASFSV EG+GRTLKGRDLSRVR+AI+ K GF+D
Sbjct: 121 DWLPPHEFLAKTRMASFSVHEGVGRTLKGRDLSRVRNAIFEKFGFQD 163

[Close]

BLAST of Carg28228-RA vs. TAIR 10
Match: AT2G28400.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 117.5 bits (293), Expect = 1.0e-26
Identity = 77/169 (45.56%), Postives = 96/169 (56.80%), Query Frame = 0


Query: 1   MATGKSYFSRSKFRFLPASEVPNHRTGCGDFVFEIDESDLFNSPRGGGVSKTRISKRISA 60
           MAT K Y+ R   RF    +   H T   D  FE+DE DLFN+      S +     I++
Sbjct: 1   MATSKCYYPRPSHRFFTTDQ---HVTATSD--FELDEWDLFNTGSDSSSSFSFSDLTITS 60

Query: 61  ------KVVDAGDGSVTTVAALPVNIPDWSKILRNEYIENRRDRFEEEANCGDEL---EN 120
                 + +  G  S    ++LPVN+PDWSKIL +E    R+   EEE + GDE+   E 
Sbjct: 61  GRTGTNRQIHGGSDSGKAASSLPVNVPDWSKILGDESRRQRKISNEEEVD-GDEILCGEG 120

Query: 121 DRFRVPPHEFVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED 161
            R RVPPHE +A  RMASFSV EG GRTLKGRDLSRVR+ I+   G ED
Sbjct: 121 TR-RVPPHELLANRRMASFSVHEGAGRTLKGRDLSRVRNTIFKIRGIED 162

[Close]

BLAST of Carg28228-RA vs. TAIR 10
Match: AT3G45210.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 115.5 bits (288), Expect = 3.8e-26
Identity = 73/159 (45.91%), Postives = 92/159 (57.86%), Query Frame = 0


Query: 2   ATGKSYFSRSKFRFLPASEVPNHRTGCGDFVFEIDESDLFNSPRGGGVSKTRISKRISAK 61
           AT KSY+ R   RFLP     N     GD  FE DESDL+ S R       R     + K
Sbjct: 4   ATRKSYYQRPSHRFLPTDRTYN---VTGDSEFEFDESDLY-SNRSDSPEFRRKLITSNRK 63

Query: 62  VVDAGDGSVTTVAALPVNIPDWSKILRNEYIENRRDRFEEEANCGDELENDRFRVPPHEF 121
              A   + T  ++LP+N+ +WSKIL  E     R   E + + G+       ++PPHE+
Sbjct: 64  SSPATVTTTTVASSLPMNVQNWSKILGKE----NRKSIENDDDGGEG------KLPPHEY 123

Query: 122 VARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED 161
           +A+TRMASFSV EGIGRTLKGRD+SRVR+AI  KTGF D
Sbjct: 124 LAKTRMASFSVHEGIGRTLKGRDMSRVRNAILEKTGFLD 148

[Close]

BLAST of Carg28228-RA vs. TAIR 10
Match: AT5G03230.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-25
Identity = 69/175 (39.43%), Postives = 101/175 (57.71%), Query Frame = 0


Query: 1   MATGKSYFSRSKFRF-LPASEVPNHRTGCGDFVFEIDESDL-----------FNSPRGGG 60
           MA+ K +F + K+ +  P  E+ +        VFE DESD+           F++ R   
Sbjct: 1   MASRKLFFVKPKYIYPEPKPEMSDEN------VFEFDESDIHNLGDHQLPNSFDAKRSIS 60

Query: 61  VSKTRISKRISAKVVDAGDGSVTTVAALPVNIPDWSKILRNEYIENR---RDRFEEEANC 120
           +S+ R   R   K  D+G+  +T   +LPVNIPDWSKIL++EY  +     D  +++ + 
Sbjct: 61  ISRLR---RKPTKTGDSGNREITKTGSLPVNIPDWSKILKSEYRGHAIPDDDSDDDDEDD 120

Query: 121 GDELENDRFRVPPHEFVARTRMASFSVEEGIGRTLKGRDLSRVRDAIWLKTGFED 161
            D  +  R  +PPHE++AR R +SF+V EGIG T KGRDL R+R+AIW K GF+D
Sbjct: 121 DDSNDGGRRMIPPHEYLARRRGSSFTVHEGIGGTAKGRDLRRLRNAIWEKIGFQD 166

[Close]

BLAST of Carg28228-RA vs. TAIR 10
Match: AT4G04630.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 85.9 bits (211), Expect = 3.2e-17
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 74  AALPVNIPDWSKILRNEYIENRRDRFEEEANCGDELENDRFRVPPHEFV----ARTRMAS 133
           ++ P+N+PDWSK+  +     R       A   D+ ++D   VPPHE+V    ART+++S
Sbjct: 78  SSAPMNVPDWSKVYGDSKSNRRSSHLHSHAADDDDEDDDGCMVPPHEWVARKLARTQISS 137

Query: 134 FSVEEGIGRTLKGRDLSRVRDAIWLKTGF 159
           FS+ EG+GRTLKGRDLS+VR+A+  KTGF
Sbjct: 138 FSMCEGVGRTLKGRDLSKVRNAVLSKTGF 166

The following BLAST results are available for this feature:

BLAST of Carg28228-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586019.1	9.0e-86	100.00	hypothetical protein SDJN03_18752, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022938325.1	5.8e-85	99.38	uncharacterized protein LOC111444460 [Cucurbita moschata]	[more]
XP_022969594.1	2.5e-80	95.06	uncharacterized protein LOC111468572 [Cucurbita maxima]	[more]
XP_023536989.1	8.7e-65	94.81	uncharacterized protein LOC111798210 [Cucurbita pepo subsp. pepo]	[more]
XP_038894808.1	1.3e-55	71.26	uncharacterized protein LOC120083221 [Benincasa hispida]	[more]

BLAST of Carg28228-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg28228-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJG2	2.8e-85	99.38	uncharacterized protein LOC111444460 OS=Cucurbita moschata OX=3662 GN=LOC1114444...	[more]
A0A6J1I330	1.2e-80	95.06	uncharacterized protein LOC111468572 OS=Cucurbita maxima OX=3661 GN=LOC111468572...	[more]
A0A1S3CH53	8.8e-55	72.09	uncharacterized protein LOC103500846 OS=Cucumis melo OX=3656 GN=LOC103500846 PE=...	[more]
A0A0A0LSF7	2.8e-53	70.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132110 PE=4 SV=1	[more]
A0A6J1I3L6	2.4e-52	67.23	uncharacterized protein LOC111469336 OS=Cucurbita maxima OX=3661 GN=LOC111469336...	[more]

BLAST of Carg28228-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60680.1	1.0e-34	49.10	Protein of unknown function, DUF584	[more]
AT2G28400.1	1.0e-26	45.56	Protein of unknown function, DUF584	[more]
AT3G45210.1	3.8e-26	45.91	Protein of unknown function, DUF584	[more]
AT5G03230.1	1.5e-25	39.43	Protein of unknown function, DUF584	[more]
AT4G04630.1	3.2e-17	47.19	Protein of unknown function, DUF584	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007608	Senescence regulator S40	PFAM	PF04520	Senescence_reg	coord: 66..160 e-value: 7.3E-33 score: 114.7
None	No IPR available	PANTHER	PTHR46525	EMB\|CAB72159.1	coord: 1..160
None	No IPR available	PANTHER	PTHR46525:SF2	EMB\|CAB72159.1	coord: 1..160

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg28228	Carg28228	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg28228-RA:1	Carg28228-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg28228-RA:cds	Carg28228-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg28228-RA	Carg28228-RA-protein	polypeptide