Carg28059-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg28059-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	50S ribosomal protein L24
Location	Carg_Chr02: 9936699 .. 9938088 (-)
Sequence length	525
RNA-Seq Expression	Carg28059-RA
Synteny	Carg28059-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTGGAAGGCTGCTGAAAAGCTTATTAGGCACTGGAAAATTCTTAGAGGAGATAATGTGAGGGAAACATTTTAAAGATAGATACCTTACTTTCTCCTATTTATGTGTTAGGTCTCCCTCTGACGATCGTGTTTGTTGGTATTTTTCATAGGTGATGATCATTAGAGGCAAGGATAAAGGAGAAACTGGTGTTATTAAGCGTGTCATTCGCACTCAAAATCGGGTTATTGTTGAGGGTAAAAACTTGGTAAGAAAATCTTTGCCAAAATGGACAATTTGAGGTTTAGAGTTGAGCTTTCTCGTGTTCAATTGCTGTGCTTGGGCCCTCTTGCACTTGTCTGATAATGTAGCTATGCAGGCATTTAAGTCTTGCAAATGATTTGCTTGGTCGTTTTGATTTAGGGTTAAGCCTTTTCCCCCTCCTCATATCCTTCTCTCTCTCTGCATTGAGGTCTTTCCATCACATGATTATCTGTAAAGTTAACTCACTTTCATCTTCAAGGTTCAGAAAGGGGCTGAATATTGAATTCAAGTAATGGCCTATGAAACTGACTTTGTGCTTGCCAATTCAAATGGAACTAAAGAATGGCAGCATTATGCTTTATGTTTATGAAACTAGAGAAGCATTTTCCCCAACACTTGCCACTCAATCAATGTCTATAGTCCACTGATATTCAAGGGTAGTAGGATATCATTAAGTTGAAAATCGTGTTATTATTTCACTTTCCGTTTATTTTACCAGCATGTATAATCTACAGCTGCAGCTGCTCTGATGAATGCTATTTTATGGTTCTAGAAGTTTTGTTTATAAATCCTGTTGTTTGTATGTTTCCCTTCATTGATTTTGAATCTCTATCATTTTTATGATTTCAGCAGTTGCACATGACATGAGTGTGTCAGATTTATTTTGTCATTCACTTTTCTATGCTTCATACAGGTGAAGAAACATATTAAACAAGGACAAGGTCATGAAGGTGGAATCTTTACGGTTGAAGCTCCACTCCATGTATCCAATGTTCAAGTTGTTGATCCAGCAACAGGGTTTGGACACTATCCATGACTGCTAATAGGTTGTGATGTTTTCCTTGTGCTAGAGCATTGTCAAACATTATTCTTTTGCAGGAAGCCTTGTAAGGTTGGTGTTCGATATCTTGAAGATGGTTCTAAAGTGCGAGTTTCAAGAGGAATTGGAGCCTCGGGATCTATAATCCCTCGTCCAGAAATCTTAAAGATAAGGACTACTCCCAGACCTACAGTTGGTACTGATCTAAACTCTATTACCCCTTTTGTTTTTATCTATTCACTTTGCTGTTATTTAGATTTTTTTTTTTTTGTTCTTTGCTAAACTTACATGTTCTGATGTGCTTCCATCGCAATTCTGTGTAGT

mRNA sequence

ATGGGTTGGAAGGCTGCTGAAAAGCTTATTAGGCACTGGAAAATTCTTAGAGGAGATAATGTGATGATCATTAGAGGCAAGGATAAAGGAGAAACTGGTGTTATTAAGCGTGTCATTCGCACTCAAAATCGGGTTATTGTTGAGGGTAAAAACTTGGTGAAGAAACATATTAAACAAGGACAAGGTCATGAAGGTGGAATCTTTACGGTTGAAGCTCCACTCCATGTATCCAATGTTCAAGTTGTTGATCCAGCAACAGGGAAGCCTTGTAAGGTTGGTGTTCGATATCTTGAAGATGGTTCTAAAGTGCGAGTTTCAAGAGGAATTGGAGCCTCGGGATCTATAATCCCTCGTCCAGAAATCTTAAAGATAAGGACTACTCCCAGACCTACAGTTGGTACTGATCTAAACTCTATTACCCCTTTTGTTTTTATCTATTCACTTTGCTGTTATTTAGATTTTTTTTTTTTTGTTCTTTGCTAAACTTACATGTTCTGATGTGCTTCCATCGCAATTCTGTGTAGT

Coding sequence (CDS)

ATGGGTTGGAAGGCTGCTGAAAAGCTTATTAGGCACTGGAAAATTCTTAGAGGAGATAATGTGATGATCATTAGAGGCAAGGATAAAGGAGAAACTGGTGTTATTAAGCGTGTCATTCGCACTCAAAATCGGGTTATTGTTGAGGGTAAAAACTTGGTGAAGAAACATATTAAACAAGGACAAGGTCATGAAGGTGGAATCTTTACGGTTGAAGCTCCACTCCATGTATCCAATGTTCAAGTTGTTGATCCAGCAACAGGGAAGCCTTGTAAGGTTGGTGTTCGATATCTTGAAGATGGTTCTAAAGTGCGAGTTTCAAGAGGAATTGGAGCCTCGGGATCTATAATCCCTCGTCCAGAAATCTTAAAGATAAGGACTACTCCCAGACCTACAGTTGGTACTGATCTAAACTCTATTACCCCTTTTGTTTTTATCTATTCACTTTGCTGTTATTTAGATTTTTTTTTTTTTGTTCTTTGCTAA

Protein sequence

MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPEILKIRTTPRPTVGTDLNSITPFVFIYSLCCYLDFFFFVLC

Homology

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BLAST of Carg28059-RA vs. NCBI nr
Match: KAG7036355.1 (rplX, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 325.1 bits (832), Expect = 3.4e-85
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPTVGTDLNSITPFVFIYSLCCYLDFFFFVLC 161
           ILKIRTTPRPTVGTDLNSITPFVFIYSLCCYLDFFFFVLC
Sbjct: 121 ILKIRTTPRPTVGTDLNSITPFVFIYSLCCYLDFFFFVLC 160

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BLAST of Carg28059-RA vs. NCBI nr
Match: KAA0057435.1 (50S ribosomal protein L24 [Cucumis melo var. makuwa] >TYK30134.1 50S ribosomal protein L24 [Cucumis melo var. makuwa])

HSP 1 Score: 269.6 bits (688), Expect = 1.7e-68
Identity = 131/140 (93.57%), Postives = 134/140 (95.71%), Query Frame = 0


Query: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQV+DP TGKPCKVG RYLEDGSKVRVSRG+ ASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVSRGLEASGSIIPRPE 120

Query: 121 ILKIRTTPRPTVGTDLNSIT 141
           ILKIRT+PRPTVGTDL   T
Sbjct: 121 ILKIRTSPRPTVGTDLKPST 140

[Close]

BLAST of Carg28059-RA vs. NCBI nr
Match: XP_022931187.1 (uncharacterized protein LOC111437445 [Cucurbita moschata] >XP_022931188.1 uncharacterized protein LOC111437445 [Cucurbita moschata] >XP_022996037.1 uncharacterized protein LOC111491363 [Cucurbita maxima] >XP_022996038.1 uncharacterized protein LOC111491363 [Cucurbita maxima] >XP_023534268.1 uncharacterized protein LOC111795875 [Cucurbita pepo subsp. pepo] >XP_023534269.1 uncharacterized protein LOC111795875 [Cucurbita pepo subsp. pepo] >KAG6606417.1 hypothetical protein SDJN03_03734, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 269.2 bits (687), Expect = 2.2e-68
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPTV 133
           ILKIRTTPRPTV
Sbjct: 121 ILKIRTTPRPTV 132

[Close]

BLAST of Carg28059-RA vs. NCBI nr
Match: XP_022146016.1 (uncharacterized protein LOC111015327 [Momordica charantia] >XP_022146017.1 uncharacterized protein LOC111015327 [Momordica charantia])

HSP 1 Score: 266.2 bits (679), Expect = 1.9e-67
Identity = 129/132 (97.73%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETG+IKRVIR+QNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGLIKRVIRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVG+RYLEDGSKVRVSRGIGASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDGSKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPTV 133
           ILKIRTTPRPTV
Sbjct: 121 ILKIRTTPRPTV 132

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BLAST of Carg28059-RA vs. NCBI nr
Match: XP_038889029.1 (50S ribosomal protein L24 [Benincasa hispida] >XP_038889030.1 50S ribosomal protein L24 [Benincasa hispida])

HSP 1 Score: 264.2 bits (674), Expect = 7.1e-67
Identity = 129/132 (97.73%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQVVDP TGKPCKVG+RYLEDGSKVRVSRGIGASGSIIPR E
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGSKVRVSRGIGASGSIIPRSE 120

Query: 121 ILKIRTTPRPTV 133
           ILKIRTTPRPTV
Sbjct: 121 ILKIRTTPRPTV 132

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BLAST of Carg28059-RA vs. ExPASy Swiss-Prot
Match: Q4UMR8 (50S ribosomal protein L24 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=rplX PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.6e-23
Identity = 54/103 (52.43%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 14  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V++I GK KG+ G I +V    ++VIV G NLVKKH K  Q  EGGI T E P
Sbjct: 5   KVKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVSGVNLVKKHTKPNQMSEGGIITKELP 64

Query: 74  LHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSII 117
           +H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG II
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KSGEII 104

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BLAST of Carg28059-RA vs. ExPASy Swiss-Prot
Match: Q9ZCR6 (50S ribosomal protein L24 OS=Rickettsia prowazekii (strain Madrid E) OX=272947 GN=rplX PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-22
Identity = 53/103 (51.46%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 14  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V+II GK KG+ G + +V   +N V+V G NLVKKH K  +  EGGI T E+P
Sbjct: 5   KVKKGDEVVIITGKYKGKKGKVLKVFPEENTVVVSGVNLVKKHTKPNKMSEGGIITQESP 64

Query: 74  LHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSII 117
           +H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG II
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KSGEII 104

[Close]

BLAST of Carg28059-RA vs. ExPASy Swiss-Prot
Match: C3PP96 (50S ribosomal protein L24 OS=Rickettsia africae (strain ESF-5) OX=347255 GN=rplX PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-22
Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 14  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V++I GK KG+ G I +V    ++VIV G N+VKKH K  Q  EGGI T E P
Sbjct: 5   KVKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVSGVNVVKKHTKSNQMSEGGIITKELP 64

Query: 74  LHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSII 117
           +H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG II
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KSGEII 104

[Close]

BLAST of Carg28059-RA vs. ExPASy Swiss-Prot
Match: Q92GX7 (50S ribosomal protein L24 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=rplX PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-22
Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 14  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V++I GK KG+ G I +V    ++VIV G N+VKKH K  Q  EGGI T E P
Sbjct: 5   KVKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVSGVNVVKKHTKSNQMSEGGIITKELP 64

Query: 74  LHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSII 117
           +H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG II
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KSGEII 104

[Close]

BLAST of Carg28059-RA vs. ExPASy Swiss-Prot
Match: A8F2D6 (50S ribosomal protein L24 OS=Rickettsia massiliae (strain Mtu5) OX=416276 GN=rplX PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-22
Identity = 54/103 (52.43%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 14  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V++I GK KG+ G I +V    ++VIV G NLVKKH K  Q  EGGI T E P
Sbjct: 5   KVKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVFGVNLVKKHTKSNQMSEGGIITKELP 64

Query: 74  LHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSII 117
           +H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG II
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KSGEII 104

[Close]

BLAST of Carg28059-RA vs. ExPASy TrEMBL
Match: A0A5A7UV70 (50S ribosomal protein L24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001180 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 8.2e-69
Identity = 131/140 (93.57%), Postives = 134/140 (95.71%), Query Frame = 0


Query: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQV+DP TGKPCKVG RYLEDGSKVRVSRG+ ASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVSRGLEASGSIIPRPE 120

Query: 121 ILKIRTTPRPTVGTDLNSIT 141
           ILKIRT+PRPTVGTDL   T
Sbjct: 121 ILKIRTSPRPTVGTDLKPST 140

[Close]

BLAST of Carg28059-RA vs. ExPASy TrEMBL
Match: A0A6J1K0T3 (uncharacterized protein LOC111491363 OS=Cucurbita maxima OX=3661 GN=LOC111491363 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.1e-68
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPTV 133
           ILKIRTTPRPTV
Sbjct: 121 ILKIRTTPRPTV 132

[Close]

BLAST of Carg28059-RA vs. ExPASy TrEMBL
Match: A0A6J1EXQ8 (uncharacterized protein LOC111437445 OS=Cucurbita moschata OX=3662 GN=LOC111437445 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.1e-68
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPTV 133
           ILKIRTTPRPTV
Sbjct: 121 ILKIRTTPRPTV 132

[Close]

BLAST of Carg28059-RA vs. ExPASy TrEMBL
Match: A0A6J1CYB5 (uncharacterized protein LOC111015327 OS=Momordica charantia OX=3673 GN=LOC111015327 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 9.1e-68
Identity = 129/132 (97.73%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETG+IKRVIR+QNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGLIKRVIRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVG+RYLEDGSKVRVSRGIGASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDGSKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPTV 133
           ILKIRTTPRPTV
Sbjct: 121 ILKIRTTPRPTV 132

[Close]

BLAST of Carg28059-RA vs. ExPASy TrEMBL
Match: A0A803NPI4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.9e-66
Identity = 123/142 (86.62%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIRHW+ILRGDNVM+IRGKDKGETGV+KRV+R+QNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWRILRGDNVMVIRGKDKGETGVVKRVVRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQV+DP TGKPCKVG++YLEDG+KVRVSRG+GASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGIKYLEDGTKVRVSRGLGASGSIIPRPE 120

Query: 121 ILKIRTTPRPTVGTDLNSITPF 143
           ILKIRTTPRPTV   + S   F
Sbjct: 121 ILKIRTTPRPTVEASVVSTGDF 142

[Close]

BLAST of Carg28059-RA vs. TAIR 10
Match: AT5G23535.1 (KOW domain-containing protein )

HSP 1 Score: 244.6 bits (623), Expect = 5.5e-65
Identity = 119/146 (81.51%), Postives = 128/146 (87.67%), Query Frame = 0


Query: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETG IKRVIR+QNRVIVEGKNL+KKHIK G
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGTIKRVIRSQNRVIVEGKNLIKKHIKGG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120
             HEGGIFTVEAPLH SNVQVVDP TG+PCKVGV+YLEDG+KVRV+RG G SGSIIPRPE
Sbjct: 61  PDHEGGIFTVEAPLHASNVQVVDPVTGRPCKVGVKYLEDGTKVRVARGTGTSGSIIPRPE 120

Query: 121 ILKIRTTPRPTVGTDLNSITPFVFIY 147
           ILKIR TPRPT     +  TP  F++
Sbjct: 121 ILKIRATPRPTTAGPKD--TPMEFVW 144

[Close]

BLAST of Carg28059-RA vs. TAIR 10
Match: AT5G54600.1 (Translation protein SH3-like family protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-12
Identity = 37/107 (34.58%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 18  GDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIK-QGQGHEGGIFTVEAPLHV 77
           GD V +I G+DKG+ G + ++    + ++++  NL  KH+K + +G  G I  +EAP+H 
Sbjct: 76  GDTVKVISGRDKGKIGEVTKIFTHNSTIVIKDVNLKTKHMKSREEGEPGQIVKIEAPIHS 135

Query: 78  SNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPEILK 124
           SNV +         +VG + LEDG KVR     G     I + ++LK
Sbjct: 136 SNVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKLLK 182

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BLAST of Carg28059-RA vs. TAIR 10
Match: AT5G54600.2 (Translation protein SH3-like family protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.2e-06
Identity = 34/106 (32.08%), Postives = 48/106 (45.28%), Query Frame = 0


Query: 18  GDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVS 77
           GD V +I G+DKG+ G + ++  T N  I                  G I  +EAP+H S
Sbjct: 76  GDTVKVISGRDKGKIGEVTKIF-THNSTI-----------------PGQIVKIEAPIHSS 135

Query: 78  NVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPEILK 124
           NV +         +VG + LEDG KVR     G     I + ++LK
Sbjct: 136 NVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKLLK 163

The following BLAST results are available for this feature:

BLAST of Carg28059-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036355.1	3.4e-85	100.00	rplX, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAA0057435.1	1.7e-68	93.57	50S ribosomal protein L24 [Cucumis melo var. makuwa] >TYK30134.1 50S ribosomal p...	[more]
XP_022931187.1	2.2e-68	100.00	uncharacterized protein LOC111437445 [Cucurbita moschata] >XP_022931188.1 unchar...	[more]
XP_022146016.1	1.9e-67	97.73	uncharacterized protein LOC111015327 [Momordica charantia] >XP_022146017.1 uncha...	[more]
XP_038889029.1	7.1e-67	97.73	50S ribosomal protein L24 [Benincasa hispida] >XP_038889030.1 50S ribosomal prot...	[more]

BLAST of Carg28059-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4UMR8	8.6e-23	52.43	50S ribosomal protein L24 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) ...	[more]
Q9ZCR6	1.1e-22	51.46	50S ribosomal protein L24 OS=Rickettsia prowazekii (strain Madrid E) OX=272947 G...	[more]
C3PP96	1.5e-22	51.46	50S ribosomal protein L24 OS=Rickettsia africae (strain ESF-5) OX=347255 GN=rplX...	[more]
Q92GX7	1.5e-22	51.46	50S ribosomal protein L24 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) ...	[more]
A8F2D6	1.5e-22	52.43	50S ribosomal protein L24 OS=Rickettsia massiliae (strain Mtu5) OX=416276 GN=rpl...	[more]

BLAST of Carg28059-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UV70	8.2e-69	93.57	50S ribosomal protein L24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1K0T3	1.1e-68	100.00	uncharacterized protein LOC111491363 OS=Cucurbita maxima OX=3661 GN=LOC111491363...	[more]
A0A6J1EXQ8	1.1e-68	100.00	uncharacterized protein LOC111437445 OS=Cucurbita moschata OX=3662 GN=LOC1114374...	[more]
A0A6J1CYB5	9.1e-68	97.73	uncharacterized protein LOC111015327 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A803NPI4	2.9e-66	86.62	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Carg28059-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23535.1	5.5e-65	81.51	KOW domain-containing protein	[more]
AT5G54600.1	2.4e-12	34.58	Translation protein SH3-like family protein	[more]
AT5G54600.2	1.2e-06	32.08	Translation protein SH3-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005824	KOW	SMART	SM00739	kow_9	coord: 14..41 e-value: 3.4E-6 score: 36.6
IPR005824	KOW	PFAM	PF00467	KOW	coord: 17..48 e-value: 6.6E-9 score: 35.4
IPR003256	Ribosomal protein L24	PFAM	PF17136	ribosomal_L24	coord: 51..108 e-value: 4.1E-22 score: 78.3
IPR003256	Ribosomal protein L24	TIGRFAM	TIGR01079	TIGR01079	coord: 14..107 e-value: 4.7E-30 score: 102.1
IPR003256	Ribosomal protein L24	PANTHER	PTHR12903	MITOCHONDRIAL RIBOSOMAL PROTEIN L24	coord: 1..133
IPR003256	Ribosomal protein L24	HAMAP	MF_01326_B	Ribosomal_L24_B	coord: 13..107 score: 18.41404
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 4..111 e-value: 2.8E-34 score: 119.5
None	No IPR available	PANTHER	PTHR12903:SF0	39S RIBOSOMAL PROTEIN L24, MITOCHONDRIAL	coord: 1..133
IPR005825	Ribosomal protein L24/L26, conserved site	PROSITE	PS01108	RIBOSOMAL_L24	coord: 18..35
IPR041988	Ribosomal protein L26/L24, KOW domain	CDD	cd06089	KOW_RPL26	coord: 18..81 e-value: 8.08357E-24 score: 86.4145
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 10..108

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg28059	Carg28059	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg28059-RA:4	Carg28059-RA:4	exon
Carg28059-RA:3	Carg28059-RA:3	exon
Carg28059-RA:2	Carg28059-RA:2	exon
Carg28059-RA:1	Carg28059-RA:1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg28059-RA:three_prime_utr	Carg28059-RA:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg28059-RA:cds	Carg28059-RA:cds_4	CDS
Carg28059-RA:cds	Carg28059-RA:cds_3	CDS
Carg28059-RA:cds	Carg28059-RA:cds_2	CDS
Carg28059-RA:cds	Carg28059-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg28059-RA	Carg28059-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome