Carg28025-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg28025-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	transcription initiation factor TFIID subunit 15b-like
Location	Carg_Chr13: 138709 .. 143580 (-)
Sequence length	3034
RNA-Seq Expression	Carg28025-RA
Synteny	Carg28025-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGTTTTTTTTTTTTTTTCTTAGTCGTTTAGTGACAAGAATCTGTGGGTGAAATGAAGTTTCTTGTAAGAAAAAACCTAGGAATTATTTATATTTATTTATGTCTGATCGGAAGACTTTCTTTTAACTGTTGCGTTCGACATGTTTTAGTTTTTTGAAATTGATTTGTAAAGCTTTGCTTTTTGCTCTTGGACTGGTGTGACTTGTACTTGGTACCTGAAATTTTCAGCGATCGGATCTTTAATTGTGAAACTAATAGTGAATTGTTTTTGTTTTCCCCTAAAGTTGCAAGCTCTTCCACGCCTCAATTTCTTTGTCTGCGTTTTTGATGCGATATAGGTGGCAGTGGCGGAGGGGGTTATCAAGGAGGAGATCGCGAGGGCGAGCAGTGGATGACGTGGTGGCGGAGGTGGTCGTGGCGGGAAGCGGCAGAGATGGTGGATTGGGTCTGCCCTAATCCTGGGTATGGCTTGTCCTTTCTTCGTTTATTTACTTGAACTTCTTTTGTTTTAGTTTATATTCATGCGTTACATGAAACGGCTCCCATTCTTAAATGCAGAAATTTTAGACATTTACGTAGGGAACTTGTCTTATGTTTGTTTTTCTACAAGTTTATTAGTTAAAAAACTTGTTTTTGTGTTTTTTTTTTTTTTTTTTTTGCCATATAGCTGCGGGAATTTGAACTTTGCTAGGAGAGTGGAGTGTAATAAGTGTGGTGCACCCTCACCTGGGGGTGCTAGCAGTGGTGGTGGTGGTTTTAATAGAGGTGGAGCTGATGGTGGTTATAATAGAGGTGGAGGTGATGGGGGTTACAACAGAGGTGGAGGTGATGGGGGTTACAATAGAGGTGGAGGTGATGGGGGTTACGGTGGTAATCGTAATGGCAGAGGTGGTAGTTTCCATGGTGGTCGAAGTGGAACTCATGATGGAGGCCGAAATGAAGGAGGGAACAGAGGTGTTAACTCGTATGGTGGTCACCAGGGAGGAGAAGATAGTGGTTACAGTCAGGTTCCCCCTTCCTCGGCACCCTCATCTGGTGGCCTTGCTGGCTCTTATCCACCATCTTACCATGGTGGAAGTGCAGATTACGGGACTGATGCAGTTCCTCCTCCTGCAAGCTACAGTGGAACTACATACCCTCCAACTTATGGTGGTCCATCTGGTGGCTATGGTGGTGATAGTCTAGGTGATGGGCGGAGTTCTGCCGGTCGGGGTGGACCATCAGCTGGATATGACGGCGGCTACAATGCAGGTGGTAGAGGTGGCTATAATTCTGGTGGTAGAGGAGGAGGAAGCTATAATACTGGTGGTGGTAGAGGTGGCGGTTATGGAAGTACACCGGCAGCAGAGCCAGCGCAAGTTAAACAGTGCGATGATAATTGTGATGATTCATGTGATAACTCTAGAATCTATGTTTCTAATTTGCCAACAGATGTGACAATTGATGAATTGAGAGAACTATTTGGTGGAATTGGTCAAGTAAGTAAGCTGCTATTCAGTTCTATTCTGTTGCTTTTGGTATTCTATCTTTATTGAAAAGTGTCGGTACCATGTGATTGTTAATTCTATATTAGACAATGTATAAACTTTCAAAATATATTTCCATGTCTAGAAAGTTACTTTTGGTTATGTGGCAATTGTTTGTGATAGATATTCTGTCTTCTTTAAAACGTGTCGCGATATGTGGCAGGTTATTTCATTTTTAAAAAAATAATGGGTATACATTCATCTATTTTCTAAATGAGTTGTCTTTTCATGTTTAGAAGTTATGTTTTGTCTTCTGATTGAGACTAAGTGTTAATGATGTAGGAAGGTCTTGTAGGTCTAGCATACTCTTATTGGATATAAAGTGGTTTTCGTTTCTCAAAGTGCTGAAGGATCGTTTATCAGCATTTCCTTTTGCATTTGGCATCAGATAATTAACTGTTTAACTGAAGCATTTTTTTGCATTTTTAATTTGAAGATTGGAAGAATTAAGCAGAAGAGGGGCTACAAGGATCAGTGGCCTTGGAACATTAAAATATATACAGATGAGATGGGAAATAACAAAGGCGATGCATGTGTATCATATGAAGATCCCCAAGCAGCGCATTCTGCTGGCGGTTTCTATAACAGTAACTACTGTGTTCCTATAGTATTTCAGAAACAATAATAGCTATTATGGTTTTAATTTTAGTTCGAACTTTTCTATGTATTATTTTTGGATGATCTTGTTTTTTTATTCTCAGATTATGATTTGAGAGGATATAACATCAGTGTTGCAATGGCTGAGAAGTCTGCACCGAGGGCTCCACCTGCATACAACCATGGGTACTTGCTTTGCCTTTATTCTTTCAAAACAAATAAACAAGTCCAAGTAAAGTTGACGCATGCATATAGTACTGCACTAGTTCTTGCTTGTTTTTTTGCTGATAAGCCTGAGAAATTGGCAAATGTAATTACCAGTAAGAGCTAAGAGGATTTCTGTTTTTCATTTCTGCAACTGTTACTCTGCCTTAGCTTTCTTCTTCATACACATACACAGGCAGAAAAAGATCTTGTTGGCAGAATCAGGATATAACAAGATGCCGTTTTGGCTAAAATGAGATACTGTTTGATATCCCCAAGTTCATGCTATCTAGGAATTCTGTTTTTTTTCCTTGTGAATTCTCAATAATTAAGAAGGGCTTGATATCTCAAAGATGATCCTATCAATGATGTACTTTGTTTTGATTTTTTTCTCTGAAACCCAAACATATTTAAAAATTAGGCTTTGAATTAAATTAGCCTGTCATTTTTTGTGTTTAGGATGAATTATTTGTTTCTGTTCTTTCAAAATTCTTTTTGTGATTGTGTCATTTCTTCCATAAATTCCAACTGGGCTAATTTTTTTAGTAGGTCACCATTTCCTTGTTCTTGAGTGTGAGGTGTGGGTAGATACAAAAAAGAAGCCTGAGAAATCAAAGTAACCTTCATGCCCAATTATACTAAAGAGTTCCAATCCAGAAGAATCATACTAAGTTGGTAACTACAAATAATTTTATTAACAAATGCCCACAAGGGGGAGTTAAACCTAATAAAAAACAAAAAGGTCCTCCAAAGATTGTGCGAAATAGCCCATAACAAAGCCAAAAAAACAAGACTGCCAAAGAACCCTTCCTTTATCACGAAAAGGAGGATTGAAAATCTCCGCTAACAACGTACAATTGATTATAGAAATACTTGTCTGTTACATTTAGAACATGTTTTTGTTTAGAATGCTACACATTCTTTAAATACTTCAATTGTCTGGATGTGCGTTCACTTATATTATTTGTATAATTATTATGCTTTAGAACTTATTTTGTACTTCAATATCATGTACAGTGGTGGTGGTAGAGGCGGATATGGAGGTGGTGGGGATAGGCGCAGAGATAGCTATAGGGATGGAGCCTCTGGACCTGATAGACATCAGCATGGTGGAAATCGATCTCGTCCTTACTGAGAAATTCGGCATTGAGCATTTTATGTAATGGGAATTGTGATCTTAGTGTTTTAATTTTGTTCCATGGCTGGATTCTTGAATTGGAGACCAAAGAGGTAGGTTGTTCACTTTCTTGGGCAAGAGACCTCTTTGCTTGCTCCTTTTTATCTAATATAGTGTTACCTGGAGGATTATAATCATGCTCGGGCTTGAGATTAATGTAGTTGTGTGAATGTTTTTTTTATAGAGGCAGGCGGATAATCTCCAAACTGCTTGTTGCTAAGGTAGGTGTTGATGTTTCAGGTGAGTGCTTCTCTTTCCATAACCATTCTTAGAATTTTGCACGAGTGGCTCTGATGTATAAAGCTCCACCTGAGCTCAGATACATCTCTGTTGGCTCCTAATGCAAGCATATCTTAACCTATAATCATCATTTCTGCATTCATATTTTAGTTACTAAATATTAACTTAACATAGTTTATTTATTATTTATTTGTTAGGATGACTGTATAATCTGTCTTATTCCATAATTCGTCTTGCATGTGTTCAAGGCTTACTTGTGATATTTGATTTTTTTCAAAAGAGAAACAGACAATATCATATCAACAAATAACTCGTAGGTTACAGTGTGGCAAGTTACATATGTGAAGTAAAATGGTTAAGTGGGCCACCCGTAGAATTTTGGAAATATTTCGTTTTTGGGACTGGGATTTTGCTGTTGGTGCAATAATGTTTGACTCCAGATTTTCAAAAGACTCATTATAGTTAAAGGGATAAAGCAAAACTAATGTTATGGATTGTGATGCCCTGGCGCTGCCATTCACATTCGGTCGATGCGCGTTAGGCTTCTTTGGAGCTCTGTCATGGAAATATTCAGCAATAACTTTGGAATTGTGTCATAGGAGTTGGATTGTGTTGGTAAAAAAAAAACTTCTGTACTTTTTTGTTTTTGTTTAATTACTTAGGATGGAGAGGTTGTTTCATTGTTGCCTGGTTGATAGCATTTTGCATAAGCTCGTTTGTTCGTACGAGCAAAAGAATGGTAATTTTCTTTATGTTCATTATTTTCATACATCTCTTTTGGCTCTGTTAAGTGTTTTATAGAAGAGAAAATCTGTAAGATAACATTTGAAACTCGAGATTAGATTCTAACATCCCTCGTCCCAACAGTTCAATAAAAGCTGTTTGAATGTGAACTGGATTTTTAGGCGACAAACCGCCATTTGTTGACTGAAATCGAGTTTTCAATTTATGGATTGATATGTATTATTCCTGAAAGCATTGTGTGTACGTTTCCATGGTGGGATTATAACACTATTTTAAGTCGCCATATAACGAGACGCCTGTAAACATTTCAAACGTTTCAAAGATACATCAATTTATGGATTGTATTGATGTTGATATCAATTTCTACTAATAAATTTCATTTC

mRNA sequence

TTAGTTTTTTTTTTTTTTTCTTAGTCGTTTAGTGACAAGAATCTGTGGGTGAAATGAAGTTTCTTGTAAGAAAAAACCTAGGAATTATTTATATTTATTTATGTCTGATCGGAAGACTTTCTTTTAACTGTTGCGTTCGACATGTTTTAGTTTTTTGAAATTGATTTGTAAAGCTTTGCTTTTTGCTCTTGGACTGGTGTGACTTGTACTTGGTACCTGAAATTTTCAGCGATCGGATCTTTAATTGTGAAACTAATAGTGAATTGTTTTTGTTTTCCCCTAAAGTTGCAAGCTCTTCCACGCCTCAATTTCTTTGTCTGCGTTTTTGATGCGATATAGGTGGCAGTGGCGGAGGGGGTTATCAAGGAGGAGATCGCGAGGGCGAGCAGTGGATGACGTGGTGGCGGAGGTGGTCGTGGCGGGAAGCGGCAGAGATGGTGGATTGGGTCTGCCCTAATCCTGGCTGCGGGAATTTGAACTTTGCTAGGAGAGTGGAGTGTAATAAGTGTGGTGCACCCTCACCTGGGGGTGCTAGCAGTGGTGGTGGTGGTTTTAATAGAGGTGGAGCTGATGGTGGTTATAATAGAGGTGGAGGTGATGGGGGTTACAACAGAGGTGGAGGTGATGGGGGTTACAATAGAGGTGGAGGTGATGGGGGTTACGGTGGTAATCGTAATGGCAGAGGTGGTAGTTTCCATGGTGGTCGAAGTGGAACTCATGATGGAGGCCGAAATGAAGGAGGGAACAGAGGTGTTAACTCGTATGGTGGTCACCAGGGAGGAGAAGATAGTGGTTACAGTCAGGTTCCCCCTTCCTCGGCACCCTCATCTGGTGGCCTTGCTGGCTCTTATCCACCATCTTACCATGGTGGAAGTGCAGATTACGGGACTGATGCAGTTCCTCCTCCTGCAAGCTACAGTGGAACTACATACCCTCCAACTTATGGTGGTCCATCTGGTGGCTATGGTGGTGATAGTCTAGGTGATGGGCGGAGTTCTGCCGGTCGGGGTGGACCATCAGCTGGATATGACGGCGGCTACAATGCAGGTGGTAGAGGTGGCTATAATTCTGGTGGTAGAGGAGGAGGAAGCTATAATACTGGTGGTGGTAGAGGTGGCGGTTATGGAAGTACACCGGCAGCAGAGCCAGCGCAAGTTAAACAGTGCGATGATAATTGTGATGATTCATGTGATAACTCTAGAATCTATGTTTCTAATTTGCCAACAGATGTGACAATTGATGAATTGAGAGAACTATTTGGTGGAATTGGTCAAATTGGAAGAATTAAGCAGAAGAGGGGCTACAAGGATCAGTGGCCTTGGAACATTAAAATATATACAGATGAGATGGGAAATAACAAAGGCGATGCATGTGTATCATATGAAGATCCCCAAGCAGCGCATTCTGCTGGCGGTTTCTATAACAATTATGATTTGAGAGGATATAACATCAGTGTTGCAATGGCTGAGAAGTCTGCACCGAGGGCTCCACCTGCATACAACCATGGTGGTGGTGGTAGAGGCGGATATGGAGGTGGTGGGGATAGGCGCAGAGATAGCTATAGGGATGGAGCCTCTGGACCTGATAGACATCAGCATGGTGGAAATCGATCTCGTCCTTACTGAGAAATTCGGCATTGAGCATTTTATGTAATGGGAATTGTGATCTTAGTGTTTTAATTTTGTTCCATGGCTGGATTCTTGAATTGGAGACCAAAGAGGTAGGTTGTTCACTTTCTTGGGCAAGAGACCTCTTTGCTTGCTCCTTTTTATCTAATATAGTGTTACCTGGAGGATTATAATCATGCTCGGGCTTGAGATTAATGTAGTTGTGTGAATGTTTTTTTTATAGAGGCAGGCGGATAATCTCCAAACTGCTTGTTGCTAAGGTAGGTGTTGATGTTTCAGGTGAGTGCTTCTCTTTCCATAACCATTCTTAGAATTTTGCACGAGTGGCTCTGATGTATAAAGCTCCACCTGAGCTCAGATACATCTCTGTTGGCTCCTAATGCAAGCATATCTTAACCTATAATCATCATTTCTGCATTCATATTTTAGTTACTAAATATTAACTTAACATAGTTTATTTATTATTTATTTGTTAGGATGACTGTATAATCTGTCTTATTCCATAATTCGTCTTGCATGTGTTCAAGGCTTACTTGTGATATTTGATTTTTTTCAAAAGAGAAACAGACAATATCATATCAACAAATAACTCGTAGGTTACAGTGTGGCAAGTTACATATGTGAAGTAAAATGGTTAAGTGGGCCACCCGTAGAATTTTGGAAATATTTCGTTTTTGGGACTGGGATTTTGCTGTTGGTGCAATAATGTTTGACTCCAGATTTTCAAAAGACTCATTATAGTTAAAGGGATAAAGCAAAACTAATGTTATGGATTGTGATGCCCTGGCGCTGCCATTCACATTCGGTCGATGCGCGTTAGGCTTCTTTGGAGCTCTGTCATGGAAATATTCAGCAATAACTTTGGAATTGTGTCATAGGAGTTGGATTGTGTTGGTAAAAAAAAAACTTCTGTACTTTTTTGTTTTTGTTTAATTACTTAGGATGGAGAGGTTGTTTCATTGTTGCCTGGTTGATAGCATTTTGCATAAGCTCGTTTGTTCGTACGAGCAAAAGAATGGTAATTTTCTTTATGTTCATTATTTTCATACATCTCTTTTGGCTCTGTTAAGTGTTTTATAGAAGAGAAAATCTGTAAGATAACATTTGAAACTCGAGATTAGATTCTAACATCCCTCGTCCCAACAGTTCAATAAAAGCTGTTTGAATGTGAACTGGATTTTTAGGCGACAAACCGCCATTTGTTGACTGAAATCGAGTTTTCAATTTATGGATTGATATGTATTATTCCTGAAAGCATTGTGTGTACGTTTCCATGGTGGGATTATAACACTATTTTAAGTCGCCATATAACGAGACGCCTGTAAACATTTCAAACGTTTCAAAGATACATCAATTTATGGATTGTATTGATGTTGATATCAATTTCTACTAATAAATTTCATTTC

Coding sequence (CDS)

ATGACGTGGTGGCGGAGGTGGTCGTGGCGGGAAGCGGCAGAGATGGTGGATTGGGTCTGCCCTAATCCTGGCTGCGGGAATTTGAACTTTGCTAGGAGAGTGGAGTGTAATAAGTGTGGTGCACCCTCACCTGGGGGTGCTAGCAGTGGTGGTGGTGGTTTTAATAGAGGTGGAGCTGATGGTGGTTATAATAGAGGTGGAGGTGATGGGGGTTACAACAGAGGTGGAGGTGATGGGGGTTACAATAGAGGTGGAGGTGATGGGGGTTACGGTGGTAATCGTAATGGCAGAGGTGGTAGTTTCCATGGTGGTCGAAGTGGAACTCATGATGGAGGCCGAAATGAAGGAGGGAACAGAGGTGTTAACTCGTATGGTGGTCACCAGGGAGGAGAAGATAGTGGTTACAGTCAGGTTCCCCCTTCCTCGGCACCCTCATCTGGTGGCCTTGCTGGCTCTTATCCACCATCTTACCATGGTGGAAGTGCAGATTACGGGACTGATGCAGTTCCTCCTCCTGCAAGCTACAGTGGAACTACATACCCTCCAACTTATGGTGGTCCATCTGGTGGCTATGGTGGTGATAGTCTAGGTGATGGGCGGAGTTCTGCCGGTCGGGGTGGACCATCAGCTGGATATGACGGCGGCTACAATGCAGGTGGTAGAGGTGGCTATAATTCTGGTGGTAGAGGAGGAGGAAGCTATAATACTGGTGGTGGTAGAGGTGGCGGTTATGGAAGTACACCGGCAGCAGAGCCAGCGCAAGTTAAACAGTGCGATGATAATTGTGATGATTCATGTGATAACTCTAGAATCTATGTTTCTAATTTGCCAACAGATGTGACAATTGATGAATTGAGAGAACTATTTGGTGGAATTGGTCAAATTGGAAGAATTAAGCAGAAGAGGGGCTACAAGGATCAGTGGCCTTGGAACATTAAAATATATACAGATGAGATGGGAAATAACAAAGGCGATGCATGTGTATCATATGAAGATCCCCAAGCAGCGCATTCTGCTGGCGGTTTCTATAACAATTATGATTTGAGAGGATATAACATCAGTGTTGCAATGGCTGAGAAGTCTGCACCGAGGGCTCCACCTGCATACAACCATGGTGGTGGTGGTAGAGGCGGATATGGAGGTGGTGGGGATAGGCGCAGAGATAGCTATAGGGATGGAGCCTCTGGACCTGATAGACATCAGCATGGTGGAAATCGATCTCGTCCTTACTGA

Protein sequence

MTWWRRWSWREAAEMVDWVCPNPGCGNLNFARRVECNKCGAPSPGGASSGGGGFNRGGADGGYNRGGGDGGYNRGGGDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRGVNSYGGHQGGEDSGYSQVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPSGGYGGDSLGDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGGYGSTPAAEPAQVKQCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEKSAPRAPPAYNHGGGGRGGYGGGGDRRRDSYRDGASGPDRHQHGGNRSRPY

Homology

[Close]

BLAST of Carg28025-RA vs. NCBI nr
Match: KAG7019111.1 (RNA-binding protein EWS [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 793.9 bits (2049), Expect = 6.6e-226
Identity = 410/410 (100.00%), Postives = 410/410 (100.00%), Query Frame = 0


Query: 1   MTWWRRWSWREAAEMVDWVCPNPGCGNLNFARRVECNKCGAPSPGGASSGGGGFNRGGAD 60
           MTWWRRWSWREAAEMVDWVCPNPGCGNLNFARRVECNKCGAPSPGGASSGGGGFNRGGAD
Sbjct: 1   MTWWRRWSWREAAEMVDWVCPNPGCGNLNFARRVECNKCGAPSPGGASSGGGGFNRGGAD 60

Query: 61  GGYNRGGGDGGYNRGGGDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRG 120
           GGYNRGGGDGGYNRGGGDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRG
Sbjct: 61  GGYNRGGGDGGYNRGGGDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRG 120

Query: 121 VNSYGGHQGGEDSGYSQVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTY 180
           VNSYGGHQGGEDSGYSQVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTY
Sbjct: 121 VNSYGGHQGGEDSGYSQVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTY 180

Query: 181 PPTYGGPSGGYGGDSLGDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGR 240
           PPTYGGPSGGYGGDSLGDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGR
Sbjct: 181 PPTYGGPSGGYGGDSLGDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGR 240

Query: 241 GGGYGSTPAAEPAQVKQCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQ 300
           GGGYGSTPAAEPAQVKQCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQ
Sbjct: 241 GGGYGSTPAAEPAQVKQCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQ 300

Query: 301 KRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEK 360
           KRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEK
Sbjct: 301 KRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEK 360

Query: 361 SAPRAPPAYNHGGGGRGGYGGGGDRRRDSYRDGASGPDRHQHGGNRSRPY 411
           SAPRAPPAYNHGGGGRGGYGGGGDRRRDSYRDGASGPDRHQHGGNRSRPY
Sbjct: 361 SAPRAPPAYNHGGGGRGGYGGGGDRRRDSYRDGASGPDRHQHGGNRSRPY 410

[Close]

BLAST of Carg28025-RA vs. NCBI nr
Match: KAG6583343.1 (TATA-binding protein-associated factor 2N, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 748.4 bits (1931), Expect = 3.2e-212
Identity = 394/403 (97.77%), Postives = 394/403 (97.77%), Query Frame = 0


Query: 17  DWVCPNPGCGNLNFARRVECNKCGAPSPGGASSGGGGFNRGGA---------DGGYNRGG 76
           DWVCPNPGCGNLNFARRVECNKCGAPSPGGASSGGGGFNRGGA         DGGYNRGG
Sbjct: 100 DWVCPNPGCGNLNFARRVECNKCGAPSPGGASSGGGGFNRGGADGGYNRGGGDGGYNRGG 159

Query: 77  GDGGYNRGGGDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRGVNSYGGH 136
           GDGGYNRGGGDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRGVNSYGGH
Sbjct: 160 GDGGYNRGGGDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRGVNSYGGH 219

Query: 137 QGGEDSGYSQVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGP 196
           QGGEDSGYSQVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGP
Sbjct: 220 QGGEDSGYSQVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGP 279

Query: 197 SGGYGGDSLGDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGGYGST 256
           SGGYGGDSLGDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGGYGST
Sbjct: 280 SGGYGGDSLGDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGGYGST 339

Query: 257 PAAEPAQVKQCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQ 316
           PAAEPAQVKQCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQ
Sbjct: 340 PAAEPAQVKQCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQ 399

Query: 317 WPWNIKIYTDEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEKSAPRAPP 376
           WPWNIKIYTDEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEKSAPRAPP
Sbjct: 400 WPWNIKIYTDEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEKSAPRAPP 459

Query: 377 AYNHGGGGRGGYGGGGDRRRDSYRDGASGPDRHQHGGNRSRPY 411
           AYNHGGGGRGGYGGGGDRRRDSYRDGASGPDRHQHGGNRSRPY
Sbjct: 460 AYNHGGGGRGGYGGGGDRRRDSYRDGASGPDRHQHGGNRSRPY 502

[Close]

BLAST of Carg28025-RA vs. NCBI nr
Match: XP_022964823.1 (transcription initiation factor TFIID subunit 15b-like [Cucurbita moschata])

HSP 1 Score: 727.6 bits (1877), Expect = 5.8e-206
Identity = 383/394 (97.21%), Postives = 384/394 (97.46%), Query Frame = 0


Query: 17  DWVCPNPGCGNLNFARRVECNKCGAPSPGGASSGGGGFNRGGADGGYNRGGGDGGYNRGG 76
           DWVCPNPGCGNLNFARRVECNKCGAPSPGGAS GGGG   GG  GG+NRGG DGGYNRGG
Sbjct: 100 DWVCPNPGCGNLNFARRVECNKCGAPSPGGASGGGGG---GGGGGGFNRGGADGGYNRGG 159

Query: 77  GDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRGVNSYGGHQGGEDSGYS 136
           GDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRG NSYGGHQGGEDSGYS
Sbjct: 160 GDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRGGNSYGGHQGGEDSGYS 219

Query: 137 QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPSGGYGGDSL 196
           QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPSGGY GDSL
Sbjct: 220 QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPSGGYSGDSL 279

Query: 197 GDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGGYGSTPAAEPAQVK 256
           GDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGGYGSTPAAEPAQVK
Sbjct: 280 GDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGGYGSTPAAEPAQVK 339

Query: 257 QCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT 316
           QCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT
Sbjct: 340 QCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT 399

Query: 317 DEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEKSAPRAPPAYNHGGGGR 376
           DEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEKSAPRAPP YNHGGGGR
Sbjct: 400 DEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEKSAPRAPPTYNHGGGGR 459

Query: 377 GGYGGGGDRRRDSYRDGASGPDRHQHGGNRSRPY 411
           GGYGGGGDRRRDSYRDGASGPDRHQHGGNRSRPY
Sbjct: 460 GGYGGGGDRRRDSYRDGASGPDRHQHGGNRSRPY 490

[Close]

BLAST of Carg28025-RA vs. NCBI nr
Match: XP_023519697.1 (transcription initiation factor TFIID subunit 15b [Cucurbita pepo subsp. pepo])

HSP 1 Score: 725.7 bits (1872), Expect = 2.2e-205
Identity = 381/394 (96.70%), Postives = 382/394 (96.95%), Query Frame = 0


Query: 17  DWVCPNPGCGNLNFARRVECNKCGAPSPGGASSGGGGFNRGGADGGYNRGGGDGGYNRGG 76
           DWVCPNPGCGNLNFARRVECNKCGAPSPGGAS GGG        GG+NRGG DGGYNRGG
Sbjct: 101 DWVCPNPGCGNLNFARRVECNKCGAPSPGGASGGGG--------GGFNRGGADGGYNRGG 160

Query: 77  GDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRGVNSYGGHQGGEDSGYS 136
           GDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRG NSYGGHQGGEDSGYS
Sbjct: 161 GDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRGGNSYGGHQGGEDSGYS 220

Query: 137 QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPSGGYGGDSL 196
           QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPSGGYGGDSL
Sbjct: 221 QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPSGGYGGDSL 280

Query: 197 GDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGGYGSTPAAEPAQVK 256
           GDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGGYGSTPAAEPAQVK
Sbjct: 281 GDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGGYGSTPAAEPAQVK 340

Query: 257 QCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT 316
           QCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT
Sbjct: 341 QCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT 400

Query: 317 DEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEKSAPRAPPAYNHGGGGR 376
           DEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEKSAPRAPP YNHGGGGR
Sbjct: 401 DEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEKSAPRAPPTYNHGGGGR 460

Query: 377 GGYGGGGDRRRDSYRDGASGPDRHQHGGNRSRPY 411
           GGYGGGGDRRRDSYRDGASGPDRHQHGGNRSRPY
Sbjct: 461 GGYGGGGDRRRDSYRDGASGPDRHQHGGNRSRPY 486

[Close]

BLAST of Carg28025-RA vs. NCBI nr
Match: XP_022970611.1 (transcription initiation factor TFIID subunit 15b-like isoform X1 [Cucurbita maxima] >XP_022970613.1 transcription initiation factor TFIID subunit 15b-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 699.5 bits (1804), Expect = 1.7e-197
Identity = 369/395 (93.42%), Postives = 373/395 (94.43%), Query Frame = 0


Query: 17  DWVCPNPGCGNLNFARRVECNKCGAPSPGGASSGGGGFNRGGADGGYNRGGGDGGYNRGG 76
           DWVCPNPGCGNLNFARRVECNKCGAPSPGGAS GGGG                GG+NRGG
Sbjct: 100 DWVCPNPGCGNLNFARRVECNKCGAPSPGGASGGGGG----------------GGFNRGG 159

Query: 77  GDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRGVNSYGGHQGGEDSGYS 136
           GDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRG NSYGGHQGGEDSG+S
Sbjct: 160 GDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRGGNSYGGHQGGEDSGHS 219

Query: 137 QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPSGGYGGDSL 196
           QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPSGGYGGDSL
Sbjct: 220 QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPSGGYGGDSL 279

Query: 197 GDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGGYGSTPAAEPAQVK 256
           GDGRS+AGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGG YGSTPAAEPAQVK
Sbjct: 280 GDGRSAAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGSYGSTPAAEPAQVK 339

Query: 257 QCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT 316
           QCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT
Sbjct: 340 QCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT 399

Query: 317 DEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEKSAPRAPPAYNHGGGGR 376
           DEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGY+ISVAMAEKSAPRAPP YNHGGGGR
Sbjct: 400 DEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYSISVAMAEKSAPRAPPTYNHGGGGR 459

Query: 377 -GGYGGGGDRRRDSYRDGASGPDRHQHGGNRSRPY 411
            GGYGGGGDRRRDSYRDG SGPDRHQHGGNRSRPY
Sbjct: 460 GGGYGGGGDRRRDSYRDGTSGPDRHQHGGNRSRPY 478

[Close]

BLAST of Carg28025-RA vs. ExPASy Swiss-Prot
Match: Q94KD0 (Transcription initiation factor TFIID subunit 15b OS=Arabidopsis thaliana OX=3702 GN=TAF15B PE=1 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 2.5e-90
Identity = 229/400 (57.25%), Postives = 262/400 (65.50%), Query Frame = 0


Query: 17  DWVCPNPGCGNLNFARRVECNKCGAPSPGGASSGGGGFNRGGADGGYNRGGGDGGYNRGG 76
           DW CPNP CGN+NFARRVECNKCGA +P G SSG             +RGG  GGY+RGG
Sbjct: 87  DWRCPNPSCGNVNFARRVECNKCGALAPSGTSSGAN-----------DRGG--GGYSRGG 146

Query: 77  GDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRGVNSYGGHQGGEDSGYS 136
           GD   +RGGG GG    RN  G S+   R   +DGG   GG     SYG     E+  Y 
Sbjct: 147 GDS--DRGGGRGG----RNDSGRSYESSR---YDGGSRSGG-----SYGSGSQRENGSYG 206

Query: 137 QVPPSSA--PSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPSGGYGGD 196
           Q PP +A  PS  G +GSYPP        YG +AVPPP SYSG   PP+YGGP GGYG D
Sbjct: 207 QAPPPAAAIPSYDG-SGSYPP-----PTGYGMEAVPPPTSYSGG--PPSYGGPRGGYGSD 266

Query: 197 SLGDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGGYGSTPAAEPAQ 256
           +     S+ GRGG S GYDGG         ++  R   SY               A   +
Sbjct: 267 A----PSTGGRGGRSGGYDGG---------SAPRRQEASYED-------------AATEK 326

Query: 257 VKQCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKI 316
           VKQCD +CDD+CDN+RIY+SNLP DVT DEL++LFGGIGQ+GRIKQKRGYKDQWP+NIKI
Sbjct: 327 VKQCDADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGYKDQWPYNIKI 386

Query: 317 YTDEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEKSAPRAPPAYNHG-- 376
           YTDE GN KGDAC++YEDP AAHSAGGF+NNY++RG  ISV MAEKSAPRAP     G  
Sbjct: 387 YTDEKGNYKGDACLAYEDPSAAHSAGGFFNNYEMRGNKISVTMAEKSAPRAPTFDQRGGG 422

Query: 377 -GGGRGGY-GGGGDRRRDSYRDGASGPDRHQHGGNRSRPY 411
            GGG GGY GGGGDRRRD+Y   +SGPDR+ HGGNRSRPY
Sbjct: 447 RGGGGGGYGGGGGDRRRDNY---SSGPDRNHHGGNRSRPY 422

[Close]

BLAST of Carg28025-RA vs. ExPASy Swiss-Prot
Match: Q92804 (TATA-binding protein-associated factor 2N OS=Homo sapiens OX=9606 GN=TAF15 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-08
Identity = 104/231 (45.02%), Postives = 112/231 (48.48%), Query Frame = 0


Query: 17  DWVCPNPGCGNLNFARRVECNKCGAPSPGGASSGGGGFNRGGADGGYNRGGGDGGYNRGG 76
           DWVCPNP CGN+NFARR  CN+C  P P  +   GG F RG   GG     G GG  RGG
Sbjct: 357 DWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDF-RGRGYGGERGYRGRGG--RGG 416

Query: 77  GDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRGVNSYGGHQGGEDSGYS 136
             GGY      GGYGG+R+  GG + G RSG   GG   GG  G +  GG+ G    GY 
Sbjct: 417 DRGGYGGDRSGGGYGGDRSS-GGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYG 476

Query: 137 QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPSGGYGGDSL 196
                     GG  G Y     GG   YG D       Y G      YGG  GGYGGD  
Sbjct: 477 ---GDRGGGYGGDRGGYGGDRGGG---YGGDR----GGYGGDR--GGYGGDRGGYGGDRG 536

Query: 197 GDG--RSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGGYG 246
           G G  RS  G GG   G   GY     GGY  G R GG Y  GG RGGGYG
Sbjct: 537 GYGGDRSRGGYGGDRGG-GSGYGGDRSGGY-GGDRSGGGY--GGDRGGGYG 567

[Close]

BLAST of Carg28025-RA vs. ExPASy TrEMBL
Match: A0A6J1HM15 (transcription initiation factor TFIID subunit 15b-like OS=Cucurbita moschata OX=3662 GN=LOC111464812 PE=4 SV=1)

HSP 1 Score: 727.6 bits (1877), Expect = 2.8e-206
Identity = 383/394 (97.21%), Postives = 384/394 (97.46%), Query Frame = 0


Query: 17  DWVCPNPGCGNLNFARRVECNKCGAPSPGGASSGGGGFNRGGADGGYNRGGGDGGYNRGG 76
           DWVCPNPGCGNLNFARRVECNKCGAPSPGGAS GGGG   GG  GG+NRGG DGGYNRGG
Sbjct: 100 DWVCPNPGCGNLNFARRVECNKCGAPSPGGASGGGGG---GGGGGGFNRGGADGGYNRGG 159

Query: 77  GDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRGVNSYGGHQGGEDSGYS 136
           GDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRG NSYGGHQGGEDSGYS
Sbjct: 160 GDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRGGNSYGGHQGGEDSGYS 219

Query: 137 QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPSGGYGGDSL 196
           QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPSGGY GDSL
Sbjct: 220 QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPSGGYSGDSL 279

Query: 197 GDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGGYGSTPAAEPAQVK 256
           GDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGGYGSTPAAEPAQVK
Sbjct: 280 GDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGGYGSTPAAEPAQVK 339

Query: 257 QCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT 316
           QCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT
Sbjct: 340 QCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT 399

Query: 317 DEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEKSAPRAPPAYNHGGGGR 376
           DEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEKSAPRAPP YNHGGGGR
Sbjct: 400 DEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEKSAPRAPPTYNHGGGGR 459

Query: 377 GGYGGGGDRRRDSYRDGASGPDRHQHGGNRSRPY 411
           GGYGGGGDRRRDSYRDGASGPDRHQHGGNRSRPY
Sbjct: 460 GGYGGGGDRRRDSYRDGASGPDRHQHGGNRSRPY 490

[Close]

BLAST of Carg28025-RA vs. ExPASy TrEMBL
Match: A0A6J1I126 (transcription initiation factor TFIID subunit 15b-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469548 PE=4 SV=1)

HSP 1 Score: 699.5 bits (1804), Expect = 8.2e-198
Identity = 369/395 (93.42%), Postives = 373/395 (94.43%), Query Frame = 0


Query: 17  DWVCPNPGCGNLNFARRVECNKCGAPSPGGASSGGGGFNRGGADGGYNRGGGDGGYNRGG 76
           DWVCPNPGCGNLNFARRVECNKCGAPSPGGAS GGGG                GG+NRGG
Sbjct: 100 DWVCPNPGCGNLNFARRVECNKCGAPSPGGASGGGGG----------------GGFNRGG 159

Query: 77  GDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRGVNSYGGHQGGEDSGYS 136
           GDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRG NSYGGHQGGEDSG+S
Sbjct: 160 GDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRGGNSYGGHQGGEDSGHS 219

Query: 137 QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPSGGYGGDSL 196
           QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPSGGYGGDSL
Sbjct: 220 QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPSGGYGGDSL 279

Query: 197 GDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGGYGSTPAAEPAQVK 256
           GDGRS+AGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGG YGSTPAAEPAQVK
Sbjct: 280 GDGRSAAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGSYGSTPAAEPAQVK 339

Query: 257 QCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT 316
           QCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT
Sbjct: 340 QCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT 399

Query: 317 DEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEKSAPRAPPAYNHGGGGR 376
           DEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGY+ISVAMAEKSAPRAPP YNHGGGGR
Sbjct: 400 DEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYSISVAMAEKSAPRAPPTYNHGGGGR 459

Query: 377 -GGYGGGGDRRRDSYRDGASGPDRHQHGGNRSRPY 411
            GGYGGGGDRRRDSYRDG SGPDRHQHGGNRSRPY
Sbjct: 460 GGGYGGGGDRRRDSYRDGTSGPDRHQHGGNRSRPY 478

[Close]

BLAST of Carg28025-RA vs. ExPASy TrEMBL
Match: A0A1S3C4S9 (transcription initiation factor TFIID subunit 15b isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497038 PE=4 SV=1)

HSP 1 Score: 659.4 bits (1700), Expect = 9.5e-186
Identity = 348/394 (88.32%), Postives = 355/394 (90.10%), Query Frame = 0


Query: 17  DWVCPNPGCGNLNFARRVECNKCGAPSPGGASSGGGGFNRGGADGGYNRGGGDGGYNRGG 76
           DWVCPNPGCGNLNFARRVECNKCGAPSPGGAS  G                       GG
Sbjct: 121 DWVCPNPGCGNLNFARRVECNKCGAPSPGGASDRG-----------------------GG 180

Query: 77  GDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRGVNSYGGHQGGEDSGYS 136
           G GGYNRGGGD GYGG+RNGRGGSFHGGRSGTHDGGRNEGG+RG NSYGGHQGGEDSGY 
Sbjct: 181 GGGGYNRGGGDSGYGGSRNGRGGSFHGGRSGTHDGGRNEGGSRGGNSYGGHQGGEDSGYG 240

Query: 137 QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPSGGYGGDSL 196
           QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGP+GGYGGDSL
Sbjct: 241 QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPTGGYGGDSL 300

Query: 197 GDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGGYGSTPAAEPAQVK 256
           GDGR +AGRGGPS GYDGGYNAGGRGGYN+GGR GGSYN  GGRGGGYGST AAEPAQVK
Sbjct: 301 GDGRGAAGRGGPSGGYDGGYNAGGRGGYNAGGR-GGSYNASGGRGGGYGSTQAAEPAQVK 360

Query: 257 QCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT 316
           QCDDNCDDSCDNSRIYVSNLP DVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT
Sbjct: 361 QCDDNCDDSCDNSRIYVSNLPPDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT 420

Query: 317 DEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEKSAPRAPPAYNHGGGGR 376
           DEMGNNKGDACVSYEDP AAHSAGGFYNNYDLRGY+I+VAMAEKSAPRAPP YNHGGGGR
Sbjct: 421 DEMGNNKGDACVSYEDPSAAHSAGGFYNNYDLRGYSINVAMAEKSAPRAPPTYNHGGGGR 480

Query: 377 GGYGGGGDRRRDSYRDGASGPDRHQHGGNRSRPY 411
           GGYGGGGDRRRDSYRDG SGPDRHQHGGNRSRPY
Sbjct: 481 GGYGGGGDRRRDSYRDGGSGPDRHQHGGNRSRPY 490

[Close]

BLAST of Carg28025-RA vs. ExPASy TrEMBL
Match: A0A1S4E2C0 (transcription initiation factor TFIID subunit 15b isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497038 PE=4 SV=1)

HSP 1 Score: 659.4 bits (1700), Expect = 9.5e-186
Identity = 348/394 (88.32%), Postives = 355/394 (90.10%), Query Frame = 0


Query: 17  DWVCPNPGCGNLNFARRVECNKCGAPSPGGASSGGGGFNRGGADGGYNRGGGDGGYNRGG 76
           DWVCPNPGCGNLNFARRVECNKCGAPSPGGAS  G                       GG
Sbjct: 91  DWVCPNPGCGNLNFARRVECNKCGAPSPGGASDRG-----------------------GG 150

Query: 77  GDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRGVNSYGGHQGGEDSGYS 136
           G GGYNRGGGD GYGG+RNGRGGSFHGGRSGTHDGGRNEGG+RG NSYGGHQGGEDSGY 
Sbjct: 151 GGGGYNRGGGDSGYGGSRNGRGGSFHGGRSGTHDGGRNEGGSRGGNSYGGHQGGEDSGYG 210

Query: 137 QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPSGGYGGDSL 196
           QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGP+GGYGGDSL
Sbjct: 211 QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPTGGYGGDSL 270

Query: 197 GDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGGYGSTPAAEPAQVK 256
           GDGR +AGRGGPS GYDGGYNAGGRGGYN+GGR GGSYN  GGRGGGYGST AAEPAQVK
Sbjct: 271 GDGRGAAGRGGPSGGYDGGYNAGGRGGYNAGGR-GGSYNASGGRGGGYGSTQAAEPAQVK 330

Query: 257 QCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT 316
           QCDDNCDDSCDNSRIYVSNLP DVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT
Sbjct: 331 QCDDNCDDSCDNSRIYVSNLPPDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT 390

Query: 317 DEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEKSAPRAPPAYNHGGGGR 376
           DEMGNNKGDACVSYEDP AAHSAGGFYNNYDLRGY+I+VAMAEKSAPRAPP YNHGGGGR
Sbjct: 391 DEMGNNKGDACVSYEDPSAAHSAGGFYNNYDLRGYSINVAMAEKSAPRAPPTYNHGGGGR 450

Query: 377 GGYGGGGDRRRDSYRDGASGPDRHQHGGNRSRPY 411
           GGYGGGGDRRRDSYRDG SGPDRHQHGGNRSRPY
Sbjct: 451 GGYGGGGDRRRDSYRDGGSGPDRHQHGGNRSRPY 460

[Close]

BLAST of Carg28025-RA vs. ExPASy TrEMBL
Match: A0A1S4E1L8 (transcription initiation factor TFIID subunit 15b isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497038 PE=4 SV=1)

HSP 1 Score: 659.4 bits (1700), Expect = 9.5e-186
Identity = 348/394 (88.32%), Postives = 355/394 (90.10%), Query Frame = 0


Query: 17  DWVCPNPGCGNLNFARRVECNKCGAPSPGGASSGGGGFNRGGADGGYNRGGGDGGYNRGG 76
           DWVCPNPGCGNLNFARRVECNKCGAPSPGGAS  G                       GG
Sbjct: 88  DWVCPNPGCGNLNFARRVECNKCGAPSPGGASDRG-----------------------GG 147

Query: 77  GDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRGVNSYGGHQGGEDSGYS 136
           G GGYNRGGGD GYGG+RNGRGGSFHGGRSGTHDGGRNEGG+RG NSYGGHQGGEDSGY 
Sbjct: 148 GGGGYNRGGGDSGYGGSRNGRGGSFHGGRSGTHDGGRNEGGSRGGNSYGGHQGGEDSGYG 207

Query: 137 QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPSGGYGGDSL 196
           QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGP+GGYGGDSL
Sbjct: 208 QVPPSSAPSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPTGGYGGDSL 267

Query: 197 GDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGGYGSTPAAEPAQVK 256
           GDGR +AGRGGPS GYDGGYNAGGRGGYN+GGR GGSYN  GGRGGGYGST AAEPAQVK
Sbjct: 268 GDGRGAAGRGGPSGGYDGGYNAGGRGGYNAGGR-GGSYNASGGRGGGYGSTQAAEPAQVK 327

Query: 257 QCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT 316
           QCDDNCDDSCDNSRIYVSNLP DVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT
Sbjct: 328 QCDDNCDDSCDNSRIYVSNLPPDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYT 387

Query: 317 DEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEKSAPRAPPAYNHGGGGR 376
           DEMGNNKGDACVSYEDP AAHSAGGFYNNYDLRGY+I+VAMAEKSAPRAPP YNHGGGGR
Sbjct: 388 DEMGNNKGDACVSYEDPSAAHSAGGFYNNYDLRGYSINVAMAEKSAPRAPPTYNHGGGGR 447

Query: 377 GGYGGGGDRRRDSYRDGASGPDRHQHGGNRSRPY 411
           GGYGGGGDRRRDSYRDG SGPDRHQHGGNRSRPY
Sbjct: 448 GGYGGGGDRRRDSYRDGGSGPDRHQHGGNRSRPY 457

[Close]

BLAST of Carg28025-RA vs. TAIR 10
Match: AT5G58470.1 (TBP-associated factor 15B )

HSP 1 Score: 334.0 bits (855), Expect = 1.8e-91
Identity = 229/400 (57.25%), Postives = 262/400 (65.50%), Query Frame = 0


Query: 17  DWVCPNPGCGNLNFARRVECNKCGAPSPGGASSGGGGFNRGGADGGYNRGGGDGGYNRGG 76
           DW CPNP CGN+NFARRVECNKCGA +P G SSG             +RGG  GGY+RGG
Sbjct: 87  DWRCPNPSCGNVNFARRVECNKCGALAPSGTSSGAN-----------DRGG--GGYSRGG 146

Query: 77  GDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRGVNSYGGHQGGEDSGYS 136
           GD   +RGGG GG    RN  G S+   R   +DGG   GG     SYG     E+  Y 
Sbjct: 147 GDS--DRGGGRGG----RNDSGRSYESSR---YDGGSRSGG-----SYGSGSQRENGSYG 206

Query: 137 QVPPSSA--PSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPSGGYGGD 196
           Q PP +A  PS  G +GSYPP        YG +AVPPP SYSG   PP+YGGP GGYG D
Sbjct: 207 QAPPPAAAIPSYDG-SGSYPP-----PTGYGMEAVPPPTSYSGG--PPSYGGPRGGYGSD 266

Query: 197 SLGDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGGYGSTPAAEPAQ 256
           +     S+ GRGG S GYDGG         ++  R   SY               A   +
Sbjct: 267 A----PSTGGRGGRSGGYDGG---------SAPRRQEASYED-------------AATEK 326

Query: 257 VKQCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKI 316
           VKQCD +CDD+CDN+RIY+SNLP DVT DEL++LFGGIGQ+GRIKQKRGYKDQWP+NIKI
Sbjct: 327 VKQCDADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGYKDQWPYNIKI 386

Query: 317 YTDEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEKSAPRAPPAYNHG-- 376
           YTDE GN KGDAC++YEDP AAHSAGGF+NNY++RG  ISV MAEKSAPRAP     G  
Sbjct: 387 YTDEKGNYKGDACLAYEDPSAAHSAGGFFNNYEMRGNKISVTMAEKSAPRAPTFDQRGGG 422

Query: 377 -GGGRGGY-GGGGDRRRDSYRDGASGPDRHQHGGNRSRPY 411
            GGG GGY GGGGDRRRD+Y   +SGPDR+ HGGNRSRPY
Sbjct: 447 RGGGGGGYGGGGGDRRRDNY---SSGPDRNHHGGNRSRPY 422

[Close]

BLAST of Carg28025-RA vs. TAIR 10
Match: AT5G58470.2 (TBP-associated factor 15B )

HSP 1 Score: 334.0 bits (855), Expect = 1.8e-91
Identity = 229/400 (57.25%), Postives = 262/400 (65.50%), Query Frame = 0


Query: 17  DWVCPNPGCGNLNFARRVECNKCGAPSPGGASSGGGGFNRGGADGGYNRGGGDGGYNRGG 76
           DW CPNP CGN+NFARRVECNKCGA +P G SSG             +RGG  GGY+RGG
Sbjct: 87  DWRCPNPSCGNVNFARRVECNKCGALAPSGTSSGAN-----------DRGG--GGYSRGG 146

Query: 77  GDGGYNRGGGDGGYGGNRNGRGGSFHGGRSGTHDGGRNEGGNRGVNSYGGHQGGEDSGYS 136
           GD   +RGGG GG    RN  G S+   R   +DGG   GG     SYG     E+  Y 
Sbjct: 147 GDS--DRGGGRGG----RNDSGRSYESSR---YDGGSRSGG-----SYGSGSQRENGSYG 206

Query: 137 QVPPSSA--PSSGGLAGSYPPSYHGGSADYGTDAVPPPASYSGTTYPPTYGGPSGGYGGD 196
           Q PP +A  PS  G +GSYPP        YG +AVPPP SYSG   PP+YGGP GGYG D
Sbjct: 207 QAPPPAAAIPSYDG-SGSYPP-----PTGYGMEAVPPPTSYSGG--PPSYGGPRGGYGSD 266

Query: 197 SLGDGRSSAGRGGPSAGYDGGYNAGGRGGYNSGGRGGGSYNTGGGRGGGYGSTPAAEPAQ 256
           +     S+ GRGG S GYDGG         ++  R   SY               A   +
Sbjct: 267 A----PSTGGRGGRSGGYDGG---------SAPRRQEASYED-------------AATEK 326

Query: 257 VKQCDDNCDDSCDNSRIYVSNLPTDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKI 316
           VKQCD +CDD+CDN+RIY+SNLP DVT DEL++LFGGIGQ+GRIKQKRGYKDQWP+NIKI
Sbjct: 327 VKQCDADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGYKDQWPYNIKI 386

Query: 317 YTDEMGNNKGDACVSYEDPQAAHSAGGFYNNYDLRGYNISVAMAEKSAPRAPPAYNHG-- 376
           YTDE GN KGDAC++YEDP AAHSAGGF+NNY++RG  ISV MAEKSAPRAP     G  
Sbjct: 387 YTDEKGNYKGDACLAYEDPSAAHSAGGFFNNYEMRGNKISVTMAEKSAPRAPTFDQRGGG 422

Query: 377 -GGGRGGY-GGGGDRRRDSYRDGASGPDRHQHGGNRSRPY 411
            GGG GGY GGGGDRRRD+Y   +SGPDR+ HGGNRSRPY
Sbjct: 447 RGGGGGGYGGGGGDRRRDNY---SSGPDRNHHGGNRSRPY 422

The following BLAST results are available for this feature:

BLAST of Carg28025-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019111.1	6.6e-226	100.00	RNA-binding protein EWS [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6583343.1	3.2e-212	97.77	TATA-binding protein-associated factor 2N, partial [Cucurbita argyrosperma subsp...	[more]
XP_022964823.1	5.8e-206	97.21	transcription initiation factor TFIID subunit 15b-like [Cucurbita moschata]	[more]
XP_023519697.1	2.2e-205	96.70	transcription initiation factor TFIID subunit 15b [Cucurbita pepo subsp. pepo]	[more]
XP_022970611.1	1.7e-197	93.42	transcription initiation factor TFIID subunit 15b-like isoform X1 [Cucurbita max...	[more]

BLAST of Carg28025-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94KD0	2.5e-90	57.25	Transcription initiation factor TFIID subunit 15b OS=Arabidopsis thaliana OX=370...	[more]
Q92804	1.8e-08	45.02	TATA-binding protein-associated factor 2N OS=Homo sapiens OX=9606 GN=TAF15 PE=1 ...	[more]

BLAST of Carg28025-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HM15	2.8e-206	97.21	transcription initiation factor TFIID subunit 15b-like OS=Cucurbita moschata OX=...	[more]
A0A6J1I126	8.2e-198	93.42	transcription initiation factor TFIID subunit 15b-like isoform X1 OS=Cucurbita m...	[more]
A0A1S3C4S9	9.5e-186	88.32	transcription initiation factor TFIID subunit 15b isoform X1 OS=Cucumis melo OX=...	[more]
A0A1S4E2C0	9.5e-186	88.32	transcription initiation factor TFIID subunit 15b isoform X2 OS=Cucumis melo OX=...	[more]
A0A1S4E1L8	9.5e-186	88.32	transcription initiation factor TFIID subunit 15b isoform X3 OS=Cucumis melo OX=...	[more]

BLAST of Carg28025-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58470.1	1.8e-91	57.25	TBP-associated factor 15B	[more]
AT5G58470.2	1.8e-91	57.25	TBP-associated factor 15B	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 270..356 e-value: 1.6E-8 score: 44.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 271..300 e-value: 6.9E-6 score: 25.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 269..360 score: 13.958878
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 16..42 e-value: 2.3E-6 score: 37.2
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 17..45 e-value: 9.6E-7 score: 28.0
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 18..39
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 10..45 score: 9.314576
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 248..403 e-value: 9.8E-20 score: 73.0
None	No IPR available	GENE3D	4.10.1060.10		coord: 13..46 e-value: 5.1E-14 score: 53.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 381..410
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 362..410
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..215
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..149
None	No IPR available	PANTHER	PTHR12999	ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED	coord: 79..218
None	No IPR available	PANTHER	PTHR12999	ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED	coord: 219..410 coord: 16..79
None	No IPR available	PANTHER	PTHR12999:SF20	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15B	coord: 219..410 coord: 79..218
None	No IPR available	PANTHER	PTHR12999:SF20	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15B	coord: 16..79
None	No IPR available	CDD	cd12280	RRM_FET	coord: 271..357 e-value: 2.9687E-37 score: 128.199
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 17..46
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 267..388

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg28025	Carg28025	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg28025-RA:5	Carg28025-RA:5	exon
Carg28025-RA:4	Carg28025-RA:4	exon
Carg28025-RA:3	Carg28025-RA:3	exon
Carg28025-RA:2	Carg28025-RA:2	exon
Carg28025-RA:1	Carg28025-RA:1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg28025-RA:three_prime_utr	Carg28025-RA:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg28025-RA:cds	Carg28025-RA:cds_5	CDS
Carg28025-RA:cds	Carg28025-RA:cds_4	CDS
Carg28025-RA:cds	Carg28025-RA:cds_3	CDS
Carg28025-RA:cds	Carg28025-RA:cds_2	CDS
Carg28025-RA:cds	Carg28025-RA:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg28025-RA:five_prime_utr	Carg28025-RA:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg28025-RA	Carg28025-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function	GO:0003743	translation initiation factor activity