Carg27746-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg27746-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr20: 5903473 .. 5904665 (+)
Sequence length279
RNA-Seq ExpressionCarg27746-RA
SyntenyCarg27746-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACGGAAACGGATGTGGAATAGGCGAAATCTGGGTGGTGGGTTTCGCGAGAGAGGCCCCCTGAACCAACATCTTCTCATCTCTGTTCTACGTTTCTTTGCTGCATTTCTGGTGCCACTTCTGCCGATTGTTCCTCGGTTTGATCCGTAAGTTTCAATACTCGTTTTCTTTTTCTGGGTTCTTTTTGTATTCTCTTCGATTTCGTTGTTATGGCTTTGAACCTTTGTTCTTTCTCTCGAATTCTGTATTTGGAGTGACCTGTGATGATCATCCGTTTTCGTGTTCTAGGGCTGCTTTTATTTGGGTATTTGTTTCAAGTTACAATTTCGAATCAGCATTTCTAGGATCTCCTGCTGCAACTAGATTTAGTGGGTTGGAGTTCATGTGTTATTTGCATCAATTAATTGTCTTAAGCCATTTTCACCTCTGAAACGATATGGTTTCTTCATGTTTTTGGGATTTAGAGAGTGATTGGTTTTGGCCCAAGTAGGCACCAGGATTAGAGCTTTATTTTGTTCCTCGTGCAATTTCTTTTCTCTAGAATAAGGCCATGTTCTTTGGAAACCGTTCAAGTATGAGTGAAAGGGGAGAAAAAAATGTTAATTGGGGATACCAATTTTTATCTTCTAGCTGGTTTGTTTCTCTACTCTAGATTATGCTTACTAAATGGGTAGGAGCATAGGGTTTAGCCAACTTTTTAAAGATCCAAAAATTAAGCAACAGTTTGATTGGCTCCCCTTTTTTATGTCCCCATGTCCCCCCGTGTGTGGCGACATAGGGGCGAAAAAAGGAAAGAGAGGGATGGGCTTTCTCTCGCTTTTGGCATAGCGGGCCCCAGTGGAAGGCCCGCACGACGGGCTATTAGCTCGTTGTGCCTGAGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATAAGCGTCTGACCCTGGGATGTGGATTATCCAAGGCACATTAGCATGACATACTTCTGTTTGAACCCGATTTCTTGCAAACACTTATGTATACTTCTAAAACCATATATTTTATTGTTAATTTGAGATATGCGTAAAGCTTATTGGTGTTATGGCTCTTTGATGACTTGGATGGACTCTACTTTCACCTCCTTGCTTTAGTCTGTCGTGGTTTTGTATTGATTTCAAGTTTCTTATTGTATTTGTTCTATATGTTTATGTGTGGCAGGA

mRNA sequence

ATGGAACGGAAACGGATGTGGAATAGGCGAAATCTGGGTGGTGGGTTTCGCGAGAGAGGCCCCCTGAACCAACATCTTCTCATCTCTGTTCTACGTTTCTTTGCTGCATTTCTGGTGCCACTTCTGCCGATTGTTCCTCGGTTTGATCCGGGCGAAAAAAGGAAAGAGAGGGATGGGCTTTCTCTCGCTTTTGGCATAGCGGGCCCCAGTGGAAGGCCCGCACGACGGGCTATTAGCTCGTTGTGCCTGAGCTGTGAGGGCTCTCAGCCACATGGATAG

Coding sequence (CDS)

ATGGAACGGAAACGGATGTGGAATAGGCGAAATCTGGGTGGTGGGTTTCGCGAGAGAGGCCCCCTGAACCAACATCTTCTCATCTCTGTTCTACGTTTCTTTGCTGCATTTCTGGTGCCACTTCTGCCGATTGTTCCTCGGTTTGATCCGGGCGAAAAAAGGAAAGAGAGGGATGGGCTTTCTCTCGCTTTTGGCATAGCGGGCCCCAGTGGAAGGCCCGCACGACGGGCTATTAGCTCGTTGTGCCTGAGCTGTGAGGGCTCTCAGCCACATGGATAG

Protein sequence

MERKRMWNRRNLGGGFRERGPLNQHLLISVLRFFAAFLVPLLPIVPRFDPGEKRKERDGLSLAFGIAGPSGRPARRAISSLCLSCEGSQPHG
Homology
[Close]
BLAST of Carg27746-RA vs. NCBI nr
Match: KAG7011040.1 (hypothetical protein SDJN02_27838, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191.4 bits (485), Expect = 3.4e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MERKRMWNRRNLGGGFRERGPLNQHLLISVLRFFAAFLVPLLPIVPRFDPGEKRKERDGL 60
          MERKRMWNRRNLGGGFRERGPLNQHLLISVLRFFAAFLVPLLPIVPRFDPGEKRKERDGL
Sbjct: 1  MERKRMWNRRNLGGGFRERGPLNQHLLISVLRFFAAFLVPLLPIVPRFDPGEKRKERDGL 60

Query: 61 SLAFGIAGPSGRPARRAISSLCLSCEGSQPHG 93
          SLAFGIAGPSGRPARRAISSLCLSCEGSQPHG
Sbjct: 61 SLAFGIAGPSGRPARRAISSLCLSCEGSQPHG 92

[Close]
BLAST of Carg27746-RA vs. NCBI nr
Match: KAG5128855.1 (hypothetical protein JHK84_035252 [Glycine max])

HSP 1 Score: 61.6 bits (148), Expect = 4.0e-06
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 49 DPGEKRKERDGLSLAFGIAGPSGRPARRAISSL 82
          D GEKRKERDG+SLAFGIAGP GRPARRAISS+
Sbjct: 9  DGGEKRKERDGVSLAFGIAGPGGRPARRAISSV 41

[Close]
BLAST of Carg27746-RA vs. NCBI nr
Match: KAG4976592.1 (hypothetical protein JHK86_036066 [Glycine max] >KAG4976593.1 hypothetical protein JHK86_036067 [Glycine max])

HSP 1 Score: 61.6 bits (148), Expect = 4.0e-06
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 49 DPGEKRKERDGLSLAFGIAGPSGRPARRAISSL 82
          D GEKRKERDG+SLAFGIAGP GRPARRAISS+
Sbjct: 2  DGGEKRKERDGVSLAFGIAGPGGRPARRAISSV 34

[Close]
BLAST of Carg27746-RA vs. NCBI nr
Match: KAG4909457.1 (hypothetical protein JHK87_055573 [Glycine soja] >KAG5103938.1 hypothetical protein JHK82_040908 [Glycine max] >KAG4914208.1 hypothetical protein JHK87_051765 [Glycine soja] >KAG4914342.1 hypothetical protein JHK87_051899 [Glycine soja] >KAG5107058.1 hypothetical protein JHK82_044028 [Glycine max])

HSP 1 Score: 61.6 bits (148), Expect = 4.0e-06
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 49 DPGEKRKERDGLSLAFGIAGPSGRPARRAISSL 82
          D GEKRKERDG+SLAFGIAGP GRPARRAISS+
Sbjct: 9  DGGEKRKERDGVSLAFGIAGPGGRPARRAISSV 41

[Close]
BLAST of Carg27746-RA vs. NCBI nr
Match: QCE10404.1 (Uncharacterized protein family Ycf68 [Vigna unguiculata])

HSP 1 Score: 60.5 bits (145), Expect = 9.0e-06
Identity = 28/31 (90.32%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 51 GEKRKERDGLSLAFGIAGPSGRPARRAISSL 82
          GEKRK+RDG+SLAFGIAGPSGRPARRAISS+
Sbjct: 4  GEKRKDRDGVSLAFGIAGPSGRPARRAISSV 34

[Close]
BLAST of Carg27746-RA vs. ExPASy TrEMBL
Match: A0A4D6NCB9 (Uncharacterized protein ycf68 OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g1634 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.4e-06
Identity = 28/31 (90.32%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 51 GEKRKERDGLSLAFGIAGPSGRPARRAISSL 82
          GEKRK+RDG+SLAFGIAGPSGRPARRAISS+
Sbjct: 4  GEKRKDRDGVSLAFGIAGPSGRPARRAISSV 34

[Close]
BLAST of Carg27746-RA vs. ExPASy TrEMBL
Match: A0A4D6NSC2 (Uncharacterized protein family Ycf1 OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g1670 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-05
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 0 

Query: 51 GEKRKERDGLSLAFGIAGPSGRPARRAISSL 82
          GEKRK+RDG+SLAFGIAGP GRPARRAISS+
Sbjct: 4  GEKRKDRDGVSLAFGIAGPGGRPARRAISSV 34

[Close]
BLAST of Carg27746-RA vs. ExPASy TrEMBL
Match: A0A445HNT1 (Uncharacterized protein ycf68 OS=Glycine soja OX=3848 GN=D0Y65_034000 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.7e-05
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 49 DPGEKRKERDGLSLAFGIAGPSGRPARRAISSL 82
          D GEKRKERD +SLAFGIAGP GRPARRAISS+
Sbjct: 9  DGGEKRKERDEVSLAFGIAGPDGRPARRAISSV 41

[Close]
BLAST of Carg27746-RA vs. ExPASy TrEMBL
Match: A0A6N2N9U7 (Uncharacterized protein ycf68 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS486410 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-04
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0 

Query: 53  KRKERDGLSLAFGIAGPSGRPARRAISSL 82
           KRKERDG+SLAFGIAGP GRPARRAISS+
Sbjct: 237 KRKERDGVSLAFGIAGPGGRPARRAISSV 265

[Close]
BLAST of Carg27746-RA vs. ExPASy TrEMBL
Match: A0A2N9HP93 (Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41670 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.3e-04
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 52  EKRKERDGLSLAFGIAGPSGRPARRAISSL 82
           +K KERDG+SLAFGIAGP GRPARRAISS+
Sbjct: 320 KKGKERDGVSLAFGIAGPGGRPARRAISSV 349

The following BLAST results are available for this feature:
BLAST of Carg27746-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7011040.13.4e-45100.00hypothetical protein SDJN02_27838, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG5128855.14.0e-0687.88hypothetical protein JHK84_035252 [Glycine max][more]
KAG4976592.14.0e-0687.88hypothetical protein JHK86_036066 [Glycine max] >KAG4976593.1 hypothetical prote... [more]
KAG4909457.14.0e-0687.88hypothetical protein JHK87_055573 [Glycine soja] >KAG5103938.1 hypothetical prot... [more]
QCE10404.19.0e-0690.32Uncharacterized protein family Ycf68 [Vigna unguiculata][more]
BLAST of Carg27746-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg27746-RA vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A4D6NCB94.4e-0690.32Uncharacterized protein ycf68 OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g1634 PE... [more]
A0A4D6NSC21.3e-0587.10Uncharacterized protein family Ycf1 OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g1... [more]
A0A445HNT11.7e-0584.85Uncharacterized protein ycf68 OS=Glycine soja OX=3848 GN=D0Y65_034000 PE=3 SV=1[more]
A0A6N2N9U71.4e-0489.66Uncharacterized protein ycf68 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS486410 PE... [more]
A0A2N9HP935.3e-0483.33Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41670 PE=3... [more]
BLAST of Carg27746-RA vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg27746Carg27746gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg27746-RA:1Carg27746-RA:1exon
Carg27746-RA:2Carg27746-RA:2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg27746-RA:cdsCarg27746-RA:cdsCDS
Carg27746-RA:cdsCarg27746-RA:cds_2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg27746-RACarg27746-RA-proteinpolypeptide