Carg27707-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg27707-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr17: 7140388 .. 7142666 (-)
Sequence length369
RNA-Seq ExpressionCarg27707-RA
SyntenyCarg27707-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCGGTTTCGCCTACTCTGGTTCATTCTAACGGGCAAAAAAACAGTATCAGCCAGCATTTTGGTTCGTTCTCTTTGGAATTCTGCCGTTGCTCTTTCACTTCATCGCCACGGTTTTTCTTCAATCGCTTCGGTCACGGCACTGGTACCTTCTCTCTTTCTCTGCTATTCATTCGCTCTGTTGTTCTTTAATCGATGCGATGCGGAGGTAGATTTCATGTATATGAATCTTGTATTTTCGTTGCTATTGTTGTTACTTCCGCGCACTCCAATTCTTGTTAATTTTTAGTTGTTTTGAGAAGTTCATGTACAAATATATGTTTCTATCAATGTTTTGGTTGAGATGTTACCGATGCAACGCTTTGTTTTCTCTATCGTTTCGGAAGATGCTTGCCCTAATTTTCGCTTCATGATTCTGTATGTGTTCGTTGCTGATTTCTCATCAGTTAAAAGTTGAAAATATCAAGAACATTTCGATTGATATGGTTCTTACAAGTAGAAATTAAAATTAGGAGGCATAGTTAGTGTCATAACATTTCGAGATTGGAGAGATACATTTACTACCTTGTTCAAAAACACTATTGGACTTCTTTGGATATGGAGTGTCGATTCTCTCTCTCTGGTTTTCAGGTGAGGGCACCGAGTTTTTTCATCCTCATATCCAATATGGTGGGCCCGACGCTCTTAAGCCACTCTACTATTTCCTTTGTTTCCCTGTCCTCGTGGCTGGAATGAGATCATATTATTAGTGATTGGCTATGAGTTACAGCTGTGATATTAGCATTTATTTAAGCCATATGTGGATGGAATCCTCATCTTTTATCAACTTCCCCACACTATCCCACATCCACCACCCATGCTTGTGTGAGCTAATTATATTCTTATTAATTGCGCTTCCTTTTGAGTATCAGACTGGATGTGTGGCTGCCTTTACAGTTCATTGAATTTTTTTTTTTAGTTATTAGTACATTATTATTGGTGCTAACCTGACATAGTTTCCTGAGTTCTTACTTCTCTATTTTTCTTTTCAGATTCTCCTCTCTTTGATTATTCCAATTTGTTTCAGTCCTATTTGCTTCAAAGTTAATTGGATGAAGAACTAATAGCTATGCCCATAGTGTGCTTACTTGATGCGGCAATACCAGAGAAATAATGCTAATCAAGAATTCTAACTTGCGTTAATGTGCTCGCTTGTCTACTGAATTTTAAGAAAATCGTTTTTAGGTTGTGGTTGATTGAAGGAAGGGTAGAGGGTCCCATGATTCGATTATAAATGAAGTAAAATTTACTTCTAAATATCAACGTTAGGACCCAGAAATAGATTTATTCTGCCGCCTCTCTATACTTTTGGCTATCAGATAAAAGTCACGGTGGGGTTGTATAATTTTGTCAAATTGACTAGGACCTCAGAAATCTTTTGATTTTGAATATTGTAACCAGCGGCGATGACTTCAATCTCCCTCCAGATTTCAGAAAAGTGGTATAAAACTTATTCTTATTTGTCCTTTTTTATGGATCTCACCTATTGGAACTGCATGATCCGATGGTGCTTATAACTTTATATACAAAGACTGCAAACATTGCTTTCCAATCTGAACACTATTTTTCTCTTGGGATCCTTGCCAGATTTGATGTTTTTCTTTGTTCCATCATTGAAAGGGTCCAAATGTCGAATCCTGTTGTGTGGGCGCATACACACTAATTGTCAAGCATTCAATCGCCAATAACCAAGTTAATTACCAAGTAAGGAGAGAAATCAAGTTGTTTTCTGCTTTTAAGTTTTATGTTCCTTTTGATTTTGGAACTATATATTAGCGTGCCTAAAGGAGGGCTTTTTACCTCGTGGGTCGTGAAGTCTATCCTCTTGCTTTAAACCTCAAATCATTGAGCAATCTAAACTTCCTTTTTATACACTATCTACTTGTTGCCATATATTTATGCTCATTTGCATGTGAATCAGCCCGTTTGGACTTCCTTTCCAAGTTCATAATCTAATCGATTTCCCATTTCATTTCTCCTTTTAACTGAATCACCCAAAACTAAAGTCTAGTTTTTAAATATGTTCTTAACAATATTCATTCATGATGATTGTTTTCCTCTACGTGCATGTGTACCAGAAATGTGCAACTTGATCTGCCTACATGTATGGGTGTGGAATCAATAAATTTGAATTGTGAGATTGGGTGGAGGTAAGGGATCTCTCTCTCTCTCCCTCTCTTAATTCTTATTGTTCTTTTCAATCGCAAGAAATCCTTATTTTACATACAGATCTGTTAA

mRNA sequence

ATGGCCCGGTTTCGCCTACTCTGGTTCATTCTAACGGGCAAAAAAACAGTATCAGCCAGCATTTTGGTTCGTTCTCTTTGGAATTCTGCCGTTGCTCTTTCACTTCATCGCCACGGTTTTTCTTCAATCGCTTCGGTCACGGCACTGATTCTCCTCTCTTTGATTATTCCAATTTGTTTCAGTCCTATTTGCTTCAAAGACCTCAGAAATCTTTTGATTTTGAATATTGTAACCAGCGGCGATGACTTCAATCTCCCTCCAGATTTCAGAAAAGTGGGTCCAAATGTCGAATCCTGTTGTGTGGGCGCATACACACTAATTGTCAAGCATTCAATCGCCAATAACCAAGTTAATTACCAAATCTGTTAA

Coding sequence (CDS)

ATGGCCCGGTTTCGCCTACTCTGGTTCATTCTAACGGGCAAAAAAACAGTATCAGCCAGCATTTTGGTTCGTTCTCTTTGGAATTCTGCCGTTGCTCTTTCACTTCATCGCCACGGTTTTTCTTCAATCGCTTCGGTCACGGCACTGATTCTCCTCTCTTTGATTATTCCAATTTGTTTCAGTCCTATTTGCTTCAAAGACCTCAGAAATCTTTTGATTTTGAATATTGTAACCAGCGGCGATGACTTCAATCTCCCTCCAGATTTCAGAAAAGTGGGTCCAAATGTCGAATCCTGTTGTGTGGGCGCATACACACTAATTGTCAAGCATTCAATCGCCAATAACCAAGTTAATTACCAAATCTGTTAA

Protein sequence

MARFRLLWFILTGKKTVSASILVRSLWNSAVALSLHRHGFSSIASVTALILLSLIIPICFSPICFKDLRNLLILNIVTSGDDFNLPPDFRKVGPNVESCCVGAYTLIVKHSIANNQVNYQIC
Homology
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BLAST of Carg27707-RA vs. NCBI nr
Match: KAG7014172.1 (hypothetical protein SDJN02_24346, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 242.3 bits (617), Expect = 2.2e-60
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 

Query: 1   MARFRLLWFILTGKKTVSASILVRSLWNSAVALSLHRHGFSSIASVTALILLSLIIPICF 60
           MARFRLLWFILTGKKTVSASILVRSLWNSAVALSLHRHGFSSIASVTALILLSLIIPICF
Sbjct: 1   MARFRLLWFILTGKKTVSASILVRSLWNSAVALSLHRHGFSSIASVTALILLSLIIPICF 60

Query: 61  SPICFKDLRNLLILNIVTSGDDFNLPPDFRKVGPNVESCCVGAYTLIVKHSIANNQVNYQ 120
           SPICFKDLRNLLILNIVTSGDDFNLPPDFRKVGPNVESCCVGAYTLIVKHSIANNQVNYQ
Sbjct: 61  SPICFKDLRNLLILNIVTSGDDFNLPPDFRKVGPNVESCCVGAYTLIVKHSIANNQVNYQ 120

Query: 121 IC 123
           IC
Sbjct: 121 IC 122

The following BLAST results are available for this feature:
BLAST of Carg27707-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014172.12.2e-60100.00hypothetical protein SDJN02_24346, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg27707-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg27707-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg27707-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg27707Carg27707gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg27707-RA:5Carg27707-RA:5exon
Carg27707-RA:4Carg27707-RA:4exon
Carg27707-RA:3Carg27707-RA:3exon
Carg27707-RA:2Carg27707-RA:2exon
Carg27707-RA:1Carg27707-RA:1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg27707-RA:cdsCarg27707-RA:cds_5CDS
Carg27707-RA:cdsCarg27707-RA:cds_4CDS
Carg27707-RA:cdsCarg27707-RA:cds_3CDS
Carg27707-RA:cdsCarg27707-RA:cds_2CDS
Carg27707-RA:cdsCarg27707-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg27707-RACarg27707-RA-proteinpolypeptide