Carg26980-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg26980-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 6559800 .. 6562547 (+)
Sequence length315
RNA-Seq ExpressionCarg26980-RA
SyntenyCarg26980-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGGGACCCGTTAAAACTAGTAACCGTCACGGCAGCGCTATGCAAAACATAGCGACCGTTGTCCTGCCATTTGATGTATGCGTCCGTACCCTCATGATGGGTTAGGGGTATCCCCCAAATGCATGAGCACACATAATGCATGAGGTCCCCCTTACTTCTACATTTTCATTATCCTTTAATACAACCCCGCTAGCATTATGTACATATCATATCATTTTTCATATCGTTTCAGACATCGTTCATCATTCATATCATATCATTTCTCATTCTTCGGTTCTCAAATCATACATAATTCTAACGGGGTTATATTTCATATCATTCATATCATGCTTTTAACGTTCTATGCTTTTAACATAACATTTCATCATATACACATCATACCATGACATATTGCATCACAATGTATCATATCATAAAAAAGTCATAACGTAAACACTTCGTAGTCATGTCGTCTTCTAACTTATCATAGCCTTAACGTTCTTATACCTATCACAGACATATCGTTACGTGAACGTATCTTAGTCATATCATCACAAGAACGTAACCTAATACTATCATTCTATCAATCCTAATGCTATCGTTCTATCAATCTATCACAAACCTATCTCTTTCTACTCGTAACCTAATCGTATCCTTCCATCAATCTCTCTTATCTATATCGCTCCGGTATGTAACCTAACCTTAACGTTTCATGAACGTATTTTACTCCTATCGTTACATTTCGTTTTGTGCATCCTTCTCGTATCCTATCTCAAACATATCTATGAACACATCATACTGTAATTATTATCATACAATTCAGATATTATAACATATACATAACAAATAAGAAGCATATCAATCTAGACACAATTCACACATATCAATATATATGACACGTGCAGAACCACGGGGCACGTGTCAACAGCAAATATAACCATGCCGATAGTAAGGTCACTTACTTGGTTAGTTTAGGCAGATGTTCCGTCGTTATCCTTAATGAAAGTCCATTGAAATCCGAGTCAACCTTTGTTAGACCATGACATCAGTTTCATATTTGAACTCTATAAAATTATTTCTCTACTCTATATTGGCCATTCTTAAATTCTCATATTTCCTGTTAGACGAAATTTGATGGAGTTCCTTGCCCTCTGATCTTTCCTATTTTATTTTTTTAAAATGATGTTAAACAAAATCTTTCCTCAATCTTCCATCTTCCACTGTAATTATTTTTGGAGATATTATTGGACAATTTTGTTAATATATCCTTACTTTCAAATCTTCTTTTTTTTTTTTTACTTTTATTTTTTTTTCTCTCTTTTCGGTTAACAGTATTCTTTTAGTTTTTTTTTTCCTTATTTTATTTGTCTTACTTCTGATTTACTTAACAATTATATTCTTAGCTTTTAATTTAATCCATTCATTTTGTTATGTTTTTTTTTCTATAATTCATATAAAATTATTACAACCAAAATCATTGCAATAATTCCGTAGATCAAATATAATTGGTTGTAATTTCCTAAAACTCATATAAAATTTTCTTCATTTAATCTCTAATTCAAAACTAAATAATTATAACCAAATTAATATTACTTAATAAAATAAGAAGAAGATTTAACATACGACTACTTATCCTCTTCAAATGAGGTATCTCCTCAGCCAAACTAAATTTGCTTAAACTTTTTTTTTTTTTTTCTATTTGTTTTGGTAGGAACCAAGAAATTCTGGGTAAATCTTTATAGAAAAGAATTCATGAATTTGGCTCAGGTCAACCCGAGGGTTTTACCCACGAACCCGAAGCCGAACCGATTCAGTTCAGGTTCAGAAAAATGAATCCAACCCTACCCGAAATGCTAATTCAACCCAACCCAACCCTTATAGTTCGGGTTGGGTTGGTTCGGGTTGTCGGGTTGAATGTACACCCCTAGTTGCCAGGTTCGCAATGCATGAACTAAAGCATAAAGCTCTGAGGTACTGATCAACTTCTCACCAAATAACATTAAAGGTCTTTGATTTTGCATTAATACAACGCCTATCCCTACTCCACTAGCATCATATTCAATTTCAAATGTTGCATGCACCGGAGCCGAATTCATTTATCTTATGAATGTACTAAGTGCCTTAGTTAATCCAAAAGGCATAACCGACCATTCATAAAGACCATACTTAGTTTTAAACTATGTTTTCCACTCATCCCTAATATGCATGTAAGTTTTTTATGATAACCCGATTTTAAATTAATTGGATGCCCTTTTTCCTCTCAGTTGAGTGCTACTCTCTTGTTTTTCACTTGATTCTTTTCAATCTCTTCTTTTGCATCACTCTGTTGCCTTCTTTACGCCCTCACCCAGCCCCAGGTTTATTTGAAATATATATATATATATATATATATATATATATATATATTTATTTGATCGTTTAATTTTAAACTATTATTATAAATAATTTTGTAACTATTTAAAAGTTAAAATTTTTATTTTAACCGAAATTAGTTTTTATTTATTTATTTTTATTATATTATTAAAACCCTTGGTTAGGGTGGAGGCACATATTTATACAACCTAAAACCTTCTTTACGCCCTCACCCAGCCGCATCACTCACTTTTATCGCCGCTTCCTTCTACGCCCGGTAAGCCATCCCTCGCCCAATCCGGTAACCCTCGTTCTTCCTCTATCTTTCTCCCTCACGTAACTTACGAATCTGCCGTCGTAAAGCAGGTACCGAAGTTATTTGCAGCGATCAAAGATGCCCAAGTCGAAGCGTGA

mRNA sequence

ATGCCGGGACCCGTTAAAACTAGTAACCGTCACGGCAGCGCTATGCAAAACATAGCGACCGTTGTCCTGCCATTTGATAACCACGGGGCACGTGTCAACAGCAAATATAACCATGCCGATAGTAAGGTCACTTACTTGCCGCATCACTCACTTTTATCGCCGCTTCCTTCTACGCCCGGTAAGCCATCCCTCGCCCAATCCGGTAACCCTCGTTCTTCCTCTATCTTTCTCCCTCACGTAACTTACGAATCTGCCGTCGTAAAGCAGGTACCGAAGTTATTTGCAGCGATCAAAGATGCCCAAGTCGAAGCGTGA

Coding sequence (CDS)

ATGCCGGGACCCGTTAAAACTAGTAACCGTCACGGCAGCGCTATGCAAAACATAGCGACCGTTGTCCTGCCATTTGATAACCACGGGGCACGTGTCAACAGCAAATATAACCATGCCGATAGTAAGGTCACTTACTTGCCGCATCACTCACTTTTATCGCCGCTTCCTTCTACGCCCGGTAAGCCATCCCTCGCCCAATCCGGTAACCCTCGTTCTTCCTCTATCTTTCTCCCTCACGTAACTTACGAATCTGCCGTCGTAAAGCAGGTACCGAAGTTATTTGCAGCGATCAAAGATGCCCAAGTCGAAGCGTGA

Protein sequence

MPGPVKTSNRHGSAMQNIATVVLPFDNHGARVNSKYNHADSKVTYLPHHSLLSPLPSTPGKPSLAQSGNPRSSSIFLPHVTYESAVVKQVPKLFAAIKDAQVEA
Homology
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BLAST of Carg26980-RA vs. NCBI nr
Match: KAG7022337.1 (hypothetical protein SDJN02_16068, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.5 bits (532), Expect = 1.4e-50
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MPGPVKTSNRHGSAMQNIATVVLPFDNHGARVNSKYNHADSKVTYLPHHSLLSPLPSTPG 60
           MPGPVKTSNRHGSAMQNIATVVLPFDNHGARVNSKYNHADSKVTYLPHHSLLSPLPSTPG
Sbjct: 1   MPGPVKTSNRHGSAMQNIATVVLPFDNHGARVNSKYNHADSKVTYLPHHSLLSPLPSTPG 60

Query: 61  KPSLAQSGNPRSSSIFLPHVTYESAVVKQVPKLFAAIKDAQVEA 105
           KPSLAQSGNPRSSSIFLPHVTYESAVVKQVPKLFAAIKDAQVEA
Sbjct: 61  KPSLAQSGNPRSSSIFLPHVTYESAVVKQVPKLFAAIKDAQVEA 104

The following BLAST results are available for this feature:
BLAST of Carg26980-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022337.11.4e-50100.00hypothetical protein SDJN02_16068, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg26980-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26980-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26980-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg26980Carg26980gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg26980-RA:1Carg26980-RA:1exon
Carg26980-RA:2Carg26980-RA:2exon
Carg26980-RA:3Carg26980-RA:3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg26980-RA:cdsCarg26980-RA:cdsCDS
Carg26980-RA:cdsCarg26980-RA:cds_2CDS
Carg26980-RA:cdsCarg26980-RA:cds_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg26980-RACarg26980-RA-proteinpolypeptide