Carg26933-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26933-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Stress-response A/B barrel domain-containing protein
Location	Carg_Chr12: 6614298 .. 6615966 (+)
Sequence length	1037
RNA-Seq Expression	Carg26933-RA
Synteny	Carg26933-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCTCCACGTTCACCTGTTCGACGAAATGCCCCTCTATAAATTCTGCTCTTCAATTACCCCATTTCACCTTGTGTTGTGAGTGAGTGAGTGAGTGAGTGAGCTTGGTTTTCCTACGCTGCCATGGCCGTGTTCAACCACCTTGTCATTGCCAAGTTTAAGGAGAGTGTGAACGTGGAAGAGATTGTTGAGCAAGTGGAGAAGATGGTTTCTGATATTCACTATGTCAAGTCCTTTCAATGGTATCTCTCCCCTTTTTATGCCCTTTATCTCTCTGTTGTGTAAGATGTTATGTGTTTTCAAGTCTTAATGCCTTAATTAATTTGAACCTAGGATGTTTTCTGCTTTCTCTTTTGGGCTTACCCTCAAAGTTTTAAATGTTCCATTTTTCTCTCCAATCGAGGTGGGATCTCACAATTCACCTCCTTCAAGACCCAACGTACTCGCTAGCACTTGTTCCTTTCTCCAATCAATGTACCCCCACTAAATCTACTCCCTTTGGGGCCAGCGTCCTTGCTGGCACACTGCCTCGTGTGTACCCCGTTTGGGGAACAGTCTCCTCGCTAGTACATCGTTCGGTCTTTGGCTCTGATACCATTTGTAAGAGCTCAAGTCCATCGCTAGTAGATATTGTCCTATTTAGGAGGAGGAAAACAAAATACCTTTTATAAGGGTGGGTAAACTTCTCCTTTATAGACTTGTTTTAAAAATCTTGAGGGGAAGCTCGAAAGAGAAAACTCAAAAGAACAATATCTACTAGCGGTGGGCGTACACCGTAAGATTATAAGATTATATAGATTATAGTTGTTATTTTTCAAAATTATGGGCGCATGAATGTTGATTTTTTTGAGTGAAATGTGGTTGGGTTGGACAGGGGACATGATGTTGAAGGGCAAGACATGGTGACACAAGGCTTCACGCACGTCTTCTCAATGACATTTGATGACAAAGAAGCCATCGCTTCATTTCTTACCCATCCTAAACATCTTGAGTTCTGTCCCACTTTCAGTGCAGCCATTGACAAGATTATTGTCCTTGATTTCCCCTCTCTTCTTGTCAAGCCACCTGCGCTGCCACCCCCATCACCCGAAGCTGTTCCACCATCTGTGATGGCATCCACACCTTTACCACCACCACCACCGCCAGTATCAGCACCAGCACCACCACCGACACCGGCATCTGCTCCGGCATAAGATTGGAAACGTTAAAAAAATCGTAGTCTCATCTTTATTTGCAGTATGTAGTGTTGTGTTTTTCTGTTTGCTTTGAGAATCATGGAAAGTGAAGTGTTTAGTTAATGGGAAGAATGTGGTTGATGAAGATCCATGCATTTGGTTGCTCAACTAATATAATATGTTGTTGCTATGTTTCTTTTTTATTTCTACGTAGGATGCCCCATCTTCCCAAGTTAGTCTGCCACTATGTTGTCTTAAACCACTCTTATGTGTAATGACTTGGCTAGATGAACACAGATGACAGGAGGATGGAAAAAAGTTCCATACAAATTTAGATATTTGATTAACTTTAAAAGTAATAGTTCAAGCACACCGCTATCATACTCTTATAAGGAATATTTTGTTTCCTTGGACTGGAATCTCACAATCCACCCCCTTCCGGGCTCCACACTTGTTCCCCTCTACAATCGATGTGGGGTCTCACAATCCACTTCC

mRNA sequence

CCTCTCCACGTTCACCTGTTCGACGAAATGCCCCTCTATAAATTCTGCTCTTCAATTACCCCATTTCACCTTGTGTTGTGAGTGAGTGAGTGAGTGAGTGAGCTTGGTTTTCCTACGCTGCCATGGCCGTGTTCAACCACCTTGTCATTGCCAAGTTTAAGGAGAGTGTGAACGTGGAAGAGATTGTTGAGCAAGTGGAGAAGATGGTTTCTGATATTCACTATGTCAAGTCCTTTCAATGGGGACATGATGTTGAAGGGCAAGACATGGTGACACAAGGCTTCACGCACGTCTTCTCAATGACATTTGATGACAAAGAAGCCATCGCTTCATTTCTTACCCATCCTAAACATCTTGAGTTCTGTCCCACTTTCAGTGCAGCCATTGACAAGATTATTGTCCTTGATTTCCCCTCTCTTCTTGTCAAGCCACCTGCGCTGCCACCCCCATCACCCGAAGCTGTTCCACCATCTGTGATGGCATCCACACCTTTACCACCACCACCACCGCCAGTATCAGCACCAGCACCACCACCGACACCGGCATCTGCTCCGGCATAAGATTGGAAACGTTAAAAAAATCGTAGTCTCATCTTTATTTGCAGTATGTAGTGTTGTGTTTTTCTGTTTGCTTTGAGAATCATGGAAAGTGAAGTGTTTAGTTAATGGGAAGAATGTGGTTGATGAAGATCCATGCATTTGGTTGCTCAACTAATATAATATGTTGTTGCTATGTTTCTTTTTTATTTCTACGTAGGATGCCCCATCTTCCCAAGTTAGTCTGCCACTATGTTGTCTTAAACCACTCTTATGTGTAATGACTTGGCTAGATGAACACAGATGACAGGAGGATGGAAAAAAGTTCCATACAAATTTAGATATTTGATTAACTTTAAAAGTAATAGTTCAAGCACACCGCTATCATACTCTTATAAGGAATATTTTGTTTCCTTGGACTGGAATCTCACAATCCACCCCCTTCCGGGCTCCACACTTGTTCCCCTCTACAATCGATGTGGGGTCTCACAATCCACTTCC

Coding sequence (CDS)

ATGGCCGTGTTCAACCACCTTGTCATTGCCAAGTTTAAGGAGAGTGTGAACGTGGAAGAGATTGTTGAGCAAGTGGAGAAGATGGTTTCTGATATTCACTATGTCAAGTCCTTTCAATGGGGACATGATGTTGAAGGGCAAGACATGGTGACACAAGGCTTCACGCACGTCTTCTCAATGACATTTGATGACAAAGAAGCCATCGCTTCATTTCTTACCCATCCTAAACATCTTGAGTTCTGTCCCACTTTCAGTGCAGCCATTGACAAGATTATTGTCCTTGATTTCCCCTCTCTTCTTGTCAAGCCACCTGCGCTGCCACCCCCATCACCCGAAGCTGTTCCACCATCTGTGATGGCATCCACACCTTTACCACCACCACCACCGCCAGTATCAGCACCAGCACCACCACCGACACCGGCATCTGCTCCGGCATAA

Protein sequence

MAVFNHLVIAKFKESVNVEEIVEQVEKMVSDIHYVKSFQWGHDVEGQDMVTQGFTHVFSMTFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPPSPEAVPPSVMASTPLPPPPPPVSAPAPPPTPASAPA

Homology

[Close]

BLAST of Carg26933-RA vs. NCBI nr
Match: KAG7020786.1 (Stress-response A/B barrel domain-containing protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 270.0 bits (689), Expect = 1.2e-68
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MAVFNHLVIAKFKESVNVEEIVEQVEKMVSDIHYVKSFQWGHDVEGQDMVTQGFTHVFSM 60
           MAVFNHLVIAKFKESVNVEEIVEQVEKMVSDIHYVKSFQWGHDVEGQDMVTQGFTHVFSM
Sbjct: 1   MAVFNHLVIAKFKESVNVEEIVEQVEKMVSDIHYVKSFQWGHDVEGQDMVTQGFTHVFSM 60

Query: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPPSPEAVPPSVMA 120
           TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPPSPEAVPPSVMA
Sbjct: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPPSPEAVPPSVMA 120

Query: 121 STPLPPPPPPVSAPAPPPTPASAPA 146
           STPLPPPPPPVSAPAPPPTPASAPA
Sbjct: 121 STPLPPPPPPVSAPAPPPTPASAPA 145

[Close]

BLAST of Carg26933-RA vs. NCBI nr
Match: KAG6585996.1 (Stress-response A/B barrel domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 266.9 bits (681), Expect = 1.0e-67
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MAVFNHLVIAKFKESVNVEEIVEQVEKMVSDIHYVKSFQWGHDVEGQDMVTQGFTHVFSM 60
           MAVFNHLVIAKFKESVNVEEIVEQVEKMVSDIHYVKSFQWGH VEGQDMVTQGFTHVFSM
Sbjct: 1   MAVFNHLVIAKFKESVNVEEIVEQVEKMVSDIHYVKSFQWGHAVEGQDMVTQGFTHVFSM 60

Query: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPPSPEAVPPSVMA 120
           TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPPSPEAVPPSVMA
Sbjct: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPPSPEAVPPSVMA 120

Query: 121 STPLPPPPPPVSAPAPPPTPASAPA 146
           STPLPPPPPPVSAPAPPPTPASAPA
Sbjct: 121 STPLPPPPPPVSAPAPPPTPASAPA 145

[Close]

BLAST of Carg26933-RA vs. NCBI nr
Match: XP_022937510.1 (stress-response A/B barrel domain-containing protein At5g22580-like [Cucurbita moschata])

HSP 1 Score: 259.6 bits (662), Expect = 1.6e-65
Identity = 140/145 (96.55%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MAVFNHLVIAKFKESVNVEEIVEQVEKMVSDIHYVKSFQWGHDVEGQDMVTQGFTHVFSM 60
           MA F HLVIAKFKESVN+EEIVEQVEKMVSDI YVKSF+WGHDVEGQDMVTQGFTHVFSM
Sbjct: 1   MAEFKHLVIAKFKESVNLEEIVEQVEKMVSDIDYVKSFEWGHDVEGQDMVTQGFTHVFSM 60

Query: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPPSPEAVPPSVMA 120
           TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPPSPEAVPPSVMA
Sbjct: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPPSPEAVPPSVMA 120

Query: 121 STPLPPPPPPVSAPAPPPTPASAPA 146
           STPLPPPPPPVSAPAPPPTPASAPA
Sbjct: 121 STPLPPPPPPVSAPAPPPTPASAPA 145

[Close]

BLAST of Carg26933-RA vs. NCBI nr
Match: XP_022969554.1 (stress-response A/B barrel domain-containing protein At5g22580-like [Cucurbita maxima])

HSP 1 Score: 255.8 bits (652), Expect = 2.3e-64
Identity = 141/147 (95.92%), Postives = 142/147 (96.60%), Query Frame = 0


Query: 1   MAVFNHLVIAKFKESVNVEEIVEQVEKMVSDIHYVKSFQWGHDVEGQDMVTQGFTHVFSM 60
           MA F HLVIAKFKESVNVEEIVEQVEKMVSDI YVKSF+WGHDVEGQDMVTQGFTHVFSM
Sbjct: 1   MAEFKHLVIAKFKESVNVEEIVEQVEKMVSDIDYVKSFEWGHDVEGQDMVTQGFTHVFSM 60

Query: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPPSPEAVPPSVMA 120
           TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPPSPEAVPPSVMA
Sbjct: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPPSPEAVPPSVMA 120

Query: 121 STPLPPPPPPVSAPAPP--PTPASAPA 146
           STPLPPPPPPVSAPAPP  PTPASAPA
Sbjct: 121 STPLPPPPPPVSAPAPPPTPTPASAPA 147

[Close]

BLAST of Carg26933-RA vs. NCBI nr
Match: XP_023537952.1 (stress-response A/B barrel domain-containing protein At5g22580-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.1 bits (632), Expect = 4.8e-62
Identity = 136/146 (93.15%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MAVFNHLVIAKFKESVNVEEIVEQVEKMVSDIHYVKSFQWGHDVEGQDMVTQGFTHVFSM 60
           MA F HLVIAKFKESVNVEEIVEQVEKMVSDI YVKSF+WGHDVEGQ+MVTQGFTHVFSM
Sbjct: 1   MAEFKHLVIAKFKESVNVEEIVEQVEKMVSDIDYVKSFEWGHDVEGQEMVTQGFTHVFSM 60

Query: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPPSPEAVPPSVMA 120
           TFDDKEAIASFLTHPKHLEFCPTFSAAI+KIIVLDFPSLL+KPPALPPPSPEAVPPSVMA
Sbjct: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIEKIIVLDFPSLLLKPPALPPPSPEAVPPSVMA 120

Query: 121 STPL-PPPPPPVSAPAPPPTPASAPA 146
           STPL PPPPPPVSAPAPPP P SAPA
Sbjct: 121 STPLPPPPPPPVSAPAPPPPPVSAPA 146

[Close]

BLAST of Carg26933-RA vs. ExPASy Swiss-Prot
Match: Q9FK81 (Stress-response A/B barrel domain-containing protein At5g22580 OS=Arabidopsis thaliana OX=3702 GN=At5g22580 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.9e-25
Identity = 55/106 (51.89%), Postives = 73/106 (68.87%), Query Frame = 0


Query: 4   FNHLVIAKFKESVNVEEIVEQVEKMVSDIHYVKSFQWGHDVEGQDMVTQGFTHVFSMTFD 63
           F HLV+ KFKE   V+EI++ +E +VS I  VKSF+WG D E  DM+ QGFTH FSMTF+
Sbjct: 6   FKHLVVVKFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFE 65

Query: 64  DKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPP 110
           +K+   +F +HP H+EF   F+A IDKI++LDFP   VK   +  P
Sbjct: 66  NKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDFPVAAVKSSVVATP 111

[Close]

BLAST of Carg26933-RA vs. ExPASy Swiss-Prot
Match: Q9LUV2 (Stress-response A/B barrel domain-containing protein HS1 OS=Arabidopsis thaliana OX=3702 GN=HS1 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-15
Identity = 36/94 (38.30%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 6   HLVIAKFKESVN---VEEIVEQVEKMVSDIHYVKSFQWGHDVEGQDMVTQGFTHVFSMTF 65
           H+++A FK+ V+   +EE+++    +V+ I  +K+F WG DV  +++  QG+TH+F  TF
Sbjct: 10  HVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENL-HQGYTHIFESTF 69

Query: 66  DDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDF 97
           + KEA+A ++ HP H+EF   F  ++DK++V+D+
Sbjct: 70  ESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDY 102

[Close]

BLAST of Carg26933-RA vs. ExPASy Swiss-Prot
Match: I6WU39 (Olivetolic acid cyclase OS=Cannabis sativa OX=3483 GN=OAC PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.2e-08
Identity = 31/99 (31.31%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 1  MAVFNHLVIAKFKESV---NVEEIVEQVEKMVSDIHYVKSFQWGHDVEGQDMVTQGFTHV 60
          MAV  HL++ KFK+ +     EE  +    +V+ I  +K   WG DV  Q    +G+TH+
Sbjct: 1  MAV-KHLIVLKFKDEITEAQKEEFFKTYVNLVNIIPAMKDVYWGKDVT-QKNKEEGYTHI 60

Query: 61 FSMTFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDF 97
            +TF+  E I  ++ HP H+ F   + +  +K+++ D+
Sbjct: 61 VEVTFESVETIQDYIIHPAHVGFGDVYRSFWEKLLIFDY 97

[Close]

BLAST of Carg26933-RA vs. ExPASy TrEMBL
Match: A0A6J1FGY0 (stress-response A/B barrel domain-containing protein At5g22580-like OS=Cucurbita moschata OX=3662 GN=LOC111443900 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.7e-66
Identity = 140/145 (96.55%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MAVFNHLVIAKFKESVNVEEIVEQVEKMVSDIHYVKSFQWGHDVEGQDMVTQGFTHVFSM 60
           MA F HLVIAKFKESVN+EEIVEQVEKMVSDI YVKSF+WGHDVEGQDMVTQGFTHVFSM
Sbjct: 1   MAEFKHLVIAKFKESVNLEEIVEQVEKMVSDIDYVKSFEWGHDVEGQDMVTQGFTHVFSM 60

Query: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPPSPEAVPPSVMA 120
           TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPPSPEAVPPSVMA
Sbjct: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPPSPEAVPPSVMA 120

Query: 121 STPLPPPPPPVSAPAPPPTPASAPA 146
           STPLPPPPPPVSAPAPPPTPASAPA
Sbjct: 121 STPLPPPPPPVSAPAPPPTPASAPA 145

[Close]

BLAST of Carg26933-RA vs. ExPASy TrEMBL
Match: A0A6J1I2Y7 (stress-response A/B barrel domain-containing protein At5g22580-like OS=Cucurbita maxima OX=3661 GN=LOC111468537 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.1e-64
Identity = 141/147 (95.92%), Postives = 142/147 (96.60%), Query Frame = 0


Query: 1   MAVFNHLVIAKFKESVNVEEIVEQVEKMVSDIHYVKSFQWGHDVEGQDMVTQGFTHVFSM 60
           MA F HLVIAKFKESVNVEEIVEQVEKMVSDI YVKSF+WGHDVEGQDMVTQGFTHVFSM
Sbjct: 1   MAEFKHLVIAKFKESVNVEEIVEQVEKMVSDIDYVKSFEWGHDVEGQDMVTQGFTHVFSM 60

Query: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPPSPEAVPPSVMA 120
           TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPPSPEAVPPSVMA
Sbjct: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPPSPEAVPPSVMA 120

Query: 121 STPLPPPPPPVSAPAPP--PTPASAPA 146
           STPLPPPPPPVSAPAPP  PTPASAPA
Sbjct: 121 STPLPPPPPPVSAPAPPPTPTPASAPA 147

[Close]

BLAST of Carg26933-RA vs. ExPASy TrEMBL
Match: A0A6J1CN73 (stress-response A/B barrel domain-containing protein At5g22580-like OS=Momordica charantia OX=3673 GN=LOC111012552 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.6e-45
Identity = 114/157 (72.61%), Postives = 122/157 (77.71%), Query Frame = 0


Query: 1   MAVFNHLVIAKFKESVNVEEIVEQVEKMVSDIHYVKSFQWGHDVEGQDMVTQGFTHVFSM 60
           M  F HLVIAKFKE VNVEEIVEQVEK+VSDI  VKSF+WGH+ EGQ+M+TQGFTHV SM
Sbjct: 1   MGEFKHLVIAKFKEGVNVEEIVEQVEKVVSDIDSVKSFEWGHEAEGQEMLTQGFTHVLSM 60

Query: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVK---PPALPP--------- 120
           TFDDKE I SFLTHPKHLEFCPTFSAAIDKI+VLDFPSLLVK   PP+LPP         
Sbjct: 61  TFDDKEGITSFLTHPKHLEFCPTFSAAIDKIVVLDFPSLLVKPPPPPSLPPPPSPPAAAA 120

Query: 121 PSPEAVPPSVMASTPLPPPPPPVSAPAPPPTPASAPA 146
           PSPE VPP  + STPLPPP P     A  PT ASAPA
Sbjct: 121 PSPETVPPPALTSTPLPPPVP---TSATAPTLASAPA 154

[Close]

BLAST of Carg26933-RA vs. ExPASy TrEMBL
Match: A0A5A7TI03 (Stress-response A/B barrel domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00480 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 9.2e-43
Identity = 110/154 (71.43%), Postives = 120/154 (77.92%), Query Frame = 0


Query: 1   MAVFNHLVIAKFKESVNVEEIVEQVEKMVSDIHYVKSFQWGHDVEGQDMVTQGFTHVFSM 60
           M  F HLV+AKFKE VNV+EIVEQVEKMVSDI  VK F+WGHDVEGQDM+TQGFTHVFSM
Sbjct: 64  MGEFKHLVVAKFKEGVNVDEIVEQVEKMVSDIDSVKFFEWGHDVEGQDMLTQGFTHVFSM 123

Query: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVK----PPALPPP-----SP 120
           TFDDKEAI SFLTHPKHLEFCPTFSAAID+I+VLDFPS+LVK    PP+ P P     +P
Sbjct: 124 TFDDKEAITSFLTHPKHLEFCPTFSAAIDQIVVLDFPSILVKVAAPPPSPPSPPASEATP 183

Query: 121 EAVPPSVMASTPLPPPPPPVSAPAPPPTPASAPA 146
           EA  P V+ ST LP P     A A  PTPASA A
Sbjct: 184 EAALPPVLTSTLLPTP-----ATATAPTPASASA 212

[Close]

BLAST of Carg26933-RA vs. ExPASy TrEMBL
Match: A0A1S3CFK4 (stress-response A/B barrel domain-containing protein At5g22580-like OS=Cucumis melo OX=3656 GN=LOC103500356 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 9.2e-43
Identity = 110/154 (71.43%), Postives = 120/154 (77.92%), Query Frame = 0


Query: 1   MAVFNHLVIAKFKESVNVEEIVEQVEKMVSDIHYVKSFQWGHDVEGQDMVTQGFTHVFSM 60
           M  F HLV+AKFKE VNV+EIVEQVEKMVSDI  VK F+WGHDVEGQDM+TQGFTHVFSM
Sbjct: 1   MGEFKHLVVAKFKEGVNVDEIVEQVEKMVSDIDSVKFFEWGHDVEGQDMLTQGFTHVFSM 60

Query: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVK----PPALPPP-----SP 120
           TFDDKEAI SFLTHPKHLEFCPTFSAAID+I+VLDFPS+LVK    PP+ P P     +P
Sbjct: 61  TFDDKEAITSFLTHPKHLEFCPTFSAAIDQIVVLDFPSILVKVAAPPPSPPSPPASEATP 120

Query: 121 EAVPPSVMASTPLPPPPPPVSAPAPPPTPASAPA 146
           EA  P V+ ST LP P     A A  PTPASA A
Sbjct: 121 EAALPPVLTSTLLPTP-----ATATAPTPASASA 149

[Close]

BLAST of Carg26933-RA vs. TAIR 10
Match: AT5G22580.1 (Stress responsive A/B Barrel Domain )

HSP 1 Score: 116.3 bits (290), Expect = 2.0e-26
Identity = 55/106 (51.89%), Postives = 73/106 (68.87%), Query Frame = 0


Query: 4   FNHLVIAKFKESVNVEEIVEQVEKMVSDIHYVKSFQWGHDVEGQDMVTQGFTHVFSMTFD 63
           F HLV+ KFKE   V+EI++ +E +VS I  VKSF+WG D E  DM+ QGFTH FSMTF+
Sbjct: 6   FKHLVVVKFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFE 65

Query: 64  DKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPP 110
           +K+   +F +HP H+EF   F+A IDKI++LDFP   VK   +  P
Sbjct: 66  NKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDFPVAAVKSSVVATP 111

[Close]

BLAST of Carg26933-RA vs. TAIR 10
Match: AT3G17210.1 (heat stable protein 1 )

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-16
Identity = 36/94 (38.30%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 6   HLVIAKFKESVN---VEEIVEQVEKMVSDIHYVKSFQWGHDVEGQDMVTQGFTHVFSMTF 65
           H+++A FK+ V+   +EE+++    +V+ I  +K+F WG DV  +++  QG+TH+F  TF
Sbjct: 10  HVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENL-HQGYTHIFESTF 69

Query: 66  DDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDF 97
           + KEA+A ++ HP H+EF   F  ++DK++V+D+
Sbjct: 70  ESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDY 102

The following BLAST results are available for this feature:

BLAST of Carg26933-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020786.1	1.2e-68	100.00	Stress-response A/B barrel domain-containing protein [Cucurbita argyrosperma sub...	[more]
KAG6585996.1	1.0e-67	99.31	Stress-response A/B barrel domain-containing protein, partial [Cucurbita argyros...	[more]
XP_022937510.1	1.6e-65	96.55	stress-response A/B barrel domain-containing protein At5g22580-like [Cucurbita m...	[more]
XP_022969554.1	2.3e-64	95.92	stress-response A/B barrel domain-containing protein At5g22580-like [Cucurbita m...	[more]
XP_023537952.1	4.8e-62	93.15	stress-response A/B barrel domain-containing protein At5g22580-like [Cucurbita p...	[more]

BLAST of Carg26933-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FK81	2.9e-25	51.89	Stress-response A/B barrel domain-containing protein At5g22580 OS=Arabidopsis th...	[more]
Q9LUV2	1.6e-15	38.30	Stress-response A/B barrel domain-containing protein HS1 OS=Arabidopsis thaliana...	[more]
I6WU39	9.2e-08	31.31	Olivetolic acid cyclase OS=Cannabis sativa OX=3483 GN=OAC PE=1 SV=1	[more]

BLAST of Carg26933-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FGY0	7.7e-66	96.55	stress-response A/B barrel domain-containing protein At5g22580-like OS=Cucurbita...	[more]
A0A6J1I2Y7	1.1e-64	95.92	stress-response A/B barrel domain-containing protein At5g22580-like OS=Cucurbita...	[more]
A0A6J1CN73	2.6e-45	72.61	stress-response A/B barrel domain-containing protein At5g22580-like OS=Momordica...	[more]
A0A5A7TI03	9.2e-43	71.43	Stress-response A/B barrel domain-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A1S3CFK4	9.2e-43	71.43	stress-response A/B barrel domain-containing protein At5g22580-like OS=Cucumis m...	[more]

BLAST of Carg26933-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22580.1	2.0e-26	51.89	Stress responsive A/B Barrel Domain	[more]
AT3G17210.1	1.1e-16	38.30	heat stable protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013097	Stress responsive alpha-beta barrel	SMART	SM00886	Dabb_2	coord: 4..98 e-value: 4.6E-17 score: 72.7
IPR013097	Stress responsive alpha-beta barrel	PFAM	PF07876	Dabb	coord: 5..97 e-value: 1.3E-20 score: 73.8
IPR013097	Stress responsive alpha-beta barrel	PROSITE	PS51502	S_R_A_B_BARREL	coord: 4..96 score: 24.718437
None	No IPR available	GENE3D	3.30.70.100		coord: 2..105 e-value: 2.7E-26 score: 93.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..145
None	No IPR available	PANTHER	PTHR33178:SF4	EXPRESSED PROTEIN	coord: 1..105
IPR044662	Stress-response A/B barrel domain-containing protein HS1/DABB1-like	PANTHER	PTHR33178	FAMILY NOT NAMED	coord: 1..105
IPR011008	Dimeric alpha-beta barrel	SUPERFAMILY	54909	Dimeric alpha+beta barrel	coord: 3..98

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg26933	Carg26933	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26933-RA:1	Carg26933-RA:1	exon
Carg26933-RA:2	Carg26933-RA:2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26933-RA:five_prime_utr	Carg26933-RA:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26933-RA:cds	Carg26933-RA:cds	CDS
Carg26933-RA:cds	Carg26933-RA:cds_2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26933-RA:three_prime_utr	Carg26933-RA:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg26933-RA	Carg26933-RA-protein	polypeptide