Carg25948-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25948-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Squalene synthase
Location	Carg_Chr20: 3986654 .. 3992882 (-)
Sequence length	2507
RNA-Seq Expression	Carg25948-RA
Synteny	Carg25948-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACGGATCCTCCCTTTTTATTTTGTTCTTGGCGAGGATCACAACAAACACTTCGGTCAGAGATTAAAGCAAGAAACAATGAGCCAAAGTTTTCTTTTAAAATTTCCCTCTTAAAAAATTCGGGTCGTCTTCTTCAAGTAGCTGGAGTCCACCCTTGATTCAGTTACCAGTCATTTGGGGTTGAATTAATCGGTTTCTTTGATTGAAGAAGAGGATCTCCATTTGAAGAATCGGGGATTTCTTCTACGGCTTGATCGGCGAGAGATCTGAAGCTCTGTGGATTCTTGGTGCTTTGAAATGGGGAGTTTGGGGGCGATTTTGAGACATCCAGATGACATTTACCCGCTTCTGAAACTGAAAATGGCTGCTAGACATGCGGAGAAGCAGATCCCGCCGGAGTCTCATTGGGGATTCTGCTACACCATGTTGCATAAGGTCTCAAGAAGTTTTGCTCTCGTTATTCAACAGCTTAAGCCCGAGCTTCGGAATGCTGTAAGTTGAAGATCAAGTGTTTCGTATTTGGCGTTTCTTTAGTTGAATGAATCTGTTTCGTTTTCTGGTTGCTGGTTTGATGATGATATTTAGCGTAGAATCTGATGAACTGGGGAAGATCCAATTTATTGCTTAAATATCGCCATCAAAATCCTGTTTGAAAGTTGAAAAAAAGGGATTTAGGATCATAGCAAATCATATCTTATGTTTTAGAATTGATTTAGAACACTGTTATGGTTGAAAATCTGGAAATCATATATCAATTTGTTTAACGAAATTGCTTCCCGTAAAGTTGTGGTGGCTTTTGATTTAGCAGATCACAAAAATATTTGAAACTATTTGTAAAGTGGGTGAACTAAATGAATTTGATTTGTAGTTATCCCTTGAGCAAAATATCCTTGTAACAGTAAAGGTCCAGGTCCACCGCTAGCTATTGTCCTCTTTGGACTTTTTCTTAAAAGTTTTTAAAATTCTTCTGCTAAGGAGAGGTTTCCGCACCCTTACCTCCACAACCAATGTGGGATTTCACAATCCACCCCCTGCGGAGTCCAGCGTCCTCACTCGCACTTATTCCCTTCTCCAATCAATGTAGGTCCCCCCAATCCACCCTCTTTGGGGTCTAGTGTCCTTGCTGGCACACCGCCTCGTGTCCACCCTCCTTTGAGGCTCAGCCTCCTCACTAGTACACCGCCTTGTGTTCACCCCCCTTCGGGGCTCAGCCTCCTCGCTGGCACATCGTCCATTGTCTGACTCTAATACCAAATGTAACCGTTCAAGCCCACCCCTAGCAGATATTGTCCTCTTTGAGCTTTCTCTTCCGGGCTTCCTCTCAAGATTTTTAAATGCGTCTGCTAGGGAGAGGTTTCCACAGCCTTATAAAAAATGTTTCGTTCTCCTTTCCAACTGATGTGAAATCTCACAATCCTTGTCTTACTTTTTAATGAAATTGAAACCATTTATCCATATGTTTATCCATCATAATGTTTCTGATTTTGTCATTTTCGTTTGTTTGTAGGTATGCATATTCTATCTTGTTCTTCGTGCCCTCGACACTGTTGGTATGTAATGAACTCGTACTTCTTTGAGAAGTTTAATGGTTTTTTCTCCTGTAATAATGACTATAATGGCATTTTGGTGGCTTTATATTGCGTTTGACTAACCTTCTTTTTATATATCTCATGTTATCTTAGTCCTACCGAATGAACTTAAGTTCGTTATCCTAAGTTTGTAACCTAGCCCGGCTAAGATGAGAGGTAAGGTCAATTTGACTCGAATCCTGTACCTGATCTTTAATCCTACACCAGTTAATGATGGGGAGAAGTTTCTCTCTTTATCATTTTTTCATCAATGTTGGCCCAGTGCTCGTCCATGCCCAATCCTAATGGACAAACCTTCGATCTGATTTGTCCCTAGCTCTATAATCCAGCCGTCTTCCTTAGTCCCATCAAGCCCTCCTCTCCAAGGCCTTGCCCTCTTTCTCAACTCAAGTCTTTCTCACTTGGGTACTCATAATCTTCATAGTTGGCAATTCAATTGAAGACGATCAATCCCATCTTAATATGTTAATCGAGAAAAACTCGTTATCTTTTTTCTAATTATATAGTTACATATGTATGTACGAAGAACATGTCGAAATTCATGCTGGTTTCTTTTTTATTTGGATTAGCCTAATGGTCCTAAAATTTATTTTATCTTTACAGAGGATGACACAAGCATACAAACAGATATCAAAGTACCAATTCTGAAAGCTTTTCACTGTCAGATATATAACCGTGATTGGCATTTTTCATGTAAGTATTTTACTTGTATTTCTGTGCATATGAGTACGATGTTATAAGAATGATTTTTATTTAAGATCTCTTCTTCTGCTAAAGTATGTTCTTTGTTCTATATTTAGGTGGCACAAAGGACTATAAAGTTCTTATGGATGAGTTTCATCACGTTTCAACTGCGTTCCTAGAACTCGGGAGAGGGTTGGTTATTACTTGGAACCTTGCCTGATGCTTTCTGAAAAAGACAACTAATTATTGATCAAGACCTGTTTCCTTCTATAAGTGTAGTGATAGATTTATTCATTGGATTCTATCCTTTTAATGAACTACAGTGACAATGACTGGTTATGGGTGGGGGTTGTGAGATCCCACCTCGGTTGGGGAGGAGAACGAAGCATTATTTATAAGGGTGTGGAAACCTCTCCCTGACAGATACGTTTTAAAAACCTTGAGGGGAAGCTTAAAAGGGAAAACCTAAAAAGGACAATATCTGCTAACGGTGGGCTTGGGCGATATGCCAGCGAGGACGCTGGGCTCCGAATGGGGTGGATTGTGGGATCCCACATTGGTTGGGGAGGAGAACGAAGCATTCTTTATATGAGTGTGGAAACTTTTCCCTAGCAGACGCGTTTTAAAAACCTTGAGGGTAAGCCCGAAAAGGAAAGCCCAAACGGTGCTCTGATTTTAATTTACTGCATCCTTGCAATTACTTCTGTTATTGTTTTCAAAAGGAACAAGCTTTTATGACTACAAAAAATAGAACTGCAAGAGATTAGATCAACAACTTGTCCAAGTCAAGAGTAACCTTTTCATTTTTGGTATCAAATAAAAAGGCCTCCAATTTGTCAAAGTTTTTAAAATGGAACATCAGAAAAGCTTTTGCATAGAACATCTCTGATTCTGACCAAAAGTTCTTCCGTGCTTAGCTAACTGTGCTGAATTGATTCTGCAGGTACCAGGAAGCAATTGAGGATATCACGAAACGGATGGGCGCAGGAATGGCCAAATTCATTTGCAAAGAGGTACAACAAGTGTCTTGCATTTGCATATTTAGTATATTTGACACAATAATTTTCTTACGTTGTGTAACCGCCCAAGGCCACCACTAGTAGATATTATCTTCTTTAGGTTTTCCTTCCGTTGTTCCCCTCAAGGTTTTTAAAACGCGTTTTCTAGGGAGAGGTTTCCACACCCTTGTAAAGAATGTTTTGTTCTCCTCCCCAACCAATGTGGGATCTCACAATTTACCCCCTCCGGAGCCCAACATCTTCCCTAGCACTCGTTCCCTTCTCTAATCGATGTGGGACCCCCCAATCCATCTCTTTGGGGCCCAGCGTCCTCGCTAGCACTCGTTCCCTTCTCGAATCGATGTGAGACCCCCCAATCCATCCCTTTGGGGCCCAGCGTCCTCGCTGACACTCGTTTCCCTTCTCCAATCGATGTGGGGCCCCCCAATCCATCCCTTCAGGGCCCAGCATGATGGCCCAGCGTCCTCGCTGGCACTCGTTCCCTTCTCCAATCGATGTGGGACCCCCCAATCCATCCCTTTGGAGCCCAGTGTGATGGCCCAGCGTCCTCGCTAGCACTCGTTCCCTTCTCCAATCGATGTGGGACCCCCCAATCCATCCCTTCGGTGCCAGCGTCCTCGCTGGCACTCGTTTCTTTCTCCAATCGATGTGGGACCCCCCAATCCATCCCTTTGGGGCCCAACGTCCTCGCTAGCACTCATTCCCTTCTCCAATTGATGTGAGACCCCCCAATCCATCCCTTCGGGTTTCAGCCTCCTTGCTGGCACACCAGCTCGTGTCCACCTCCCTTCGGGGTTCAACCTCCTCGCTGGCACGTTGCTCAATGTCTGACTTTGATATCATTTGTAACAGTCCAAGCCTATCGCTAGCAAATATTGTCCTATTTGGGCTTTTCCTCAAGGTTTTTAAAATGCGTTTACTAAGGAGAGGTTTCCACACCCTTATAAAGAATACTTCGTTCTCCTCCCCAACCAATGTGGGATCTCACATTTTCTTTTTCCTTCCCACCCAATAGAGTAATATATTAGTAATGGTTAGTAAGGAACGTGGCTAAAGTAATGCATTGATTGGAGAAGAGAACTGAAGCATTTCTTCTCTTCTCGTAGGTAGAGACAGTTGAAGATTATGATGAATATTGTCACTACGTAGCTGGACTTGTCGGACTAGGTTTATCCAAGCTGTTCCACGCTTCGAAGTCAGAGGACTTGGCACCCGATTCTCTTTCAAATTCTATGGGATTGTTTCTTCAGGTCAGCTATTATAATTGAAACGATCATTGTGCTTTCCGAACAATTCATTAATCGGTGTTGAAGTTTGACTCTGATGTACTCTTTTTCGAACTATTATAACACAGAAAACGAATATTATTCGAGATTACTTGGAGGATATCAATGAGATACCAAAGTCTAGGATGTTTTGGCCTCGTGAGATTTGGAGCAAATATGCTGATAAACTAGAGGTGCACAAGTCTACATACCTTCTACCGCCTTTTGGTTTCTTCTTTCGTGTTCTTCGTCGTCTTCTTGTCTTATCGGCTCGTTCTACTCTTTTCTGCATTACAGGATTTTAAATACGAGAAGAATTCAGTCAAGGCCGTGCAATGCCTCAATGATTTGGTCACTAATGCATTGACCCATGTGGAGGATTGCCTAGAATACATGTCTAACTTGAAAGATCTTTCCATATTTCGATTTTGTGCAATCCCTCAGGTATGAAATAAATGTTGCTGTGTTCATCTCTTTCATGTCAAGAACAGTATTTGGACATCTCTTTCATGTTATGATAGATTATGGCAATTGGAACACTAGCATTATGCTACAACAATGTTGACGTCTTCAGAGGGGTCGTCAAAATGCGTCGGGGTACGATTTCCATTGACTGTTTCATTTTGTACAACTCCCAAAAAGGGAGCTAGCCTTCATGGAATCGACCCATAGCTTGAATTTTTATGGTGTCCGTTCTACAGGTCTTACTGCAAAGGTCATTTATCGAACGAAAACGATGGCTGACGTCTATGGAGCTTTCTTTGATTTTTCTGTTATGCTGAAGGCTAAGGTAGAAATCGTCCTGTCAGTCTCGGTGATTGCTCGGTGACTGTATATCGTTTTTCTGCATAAATATCGCATCATCTAACGTTGCTTAATGAAACTAACTTCCTTGGGTTCTACAGGTCAACAGCAGTGATCCTAATGCTTCTAAAACCCTGACCAGGATTGAGGCAATACAGAAAACATGCAAGCAGTCGGGGCTATTGAACAAGAGGTTCGTATTTTTCGTCCTCGGTCGATTTCTTACCTATCTTTCAACCTTAAAATCCTCCGAGCAGTCTGAAACGTTCCATCGTGTTATTGTTCACCAGGGAATTGTATGCAGTACGAAGTGAGCCCATGTGCAATCCAGCTGCGGTGAGTTTCTATTACTCGATCACATAAAAAACGATATCGTTGTAGTGTAAGAATATCTGATGATGTTTTTGTTGTTTCGATCTAGATTGTCGTACTTTTCAGCCTATTATGCATCATTCTCGCTTATCTCTCCGCTAAACGATTACCAGCTAACCAACCAGTATGAACGTCAAAGTCCGGTAAGATCGATAAATCAAACACAAGAATGTATGTCGTCGTTTATGTTCTTAGTTCGGTTTCCTCGAATGCAGGGTACGAGTTTCAACAGAACGCACCGTGAACATGGGCAGTAAGTTTCAGTTTGTAGCTCAATTATTGTCTGAGTTTTGTTTGAATATTACAATGGCTGTAAGTTAGTGTTTGTTTAGTACAGAGCATGAAACAAGTGAAATTCTGTAACCTTCTAATTCTTCTTTTTCAATCTTCTAATAAGAGATTACGTCTTGGAATTATAATTTCTTCACAAATGGTGTTTCAGTACCCTGTGGATTGTTTATTTGTGTTTTTTTTTTTTTTTCCCAGAAAAAAAATT

mRNA sequence

GAACGGATCCTCCCTTTTTATTTTGTTCTTGGCGAGGATCACAACAAACACTTCGGTCAGAGATTAAAGCAAGAAACAATGAGCCAAAGTTTTCTTTTAAAATTTCCCTCTTAAAAAATTCGGGTCGTCTTCTTCAAGTAGCTGGAGTCCACCCTTGATTCAGTTACCAGTCATTTGGGGTTGAATTAATCGGTTTCTTTGATTGAAGAAGAGGATCTCCATTTGAAGAATCGGGGATTTCTTCTACGGCTTGATCGGCGAGAGATCTGAAGCTCTGTGGATTCTTGGTGCTTTGAAATGGGGAGTTTGGGGGCGATTTTGAGACATCCAGATGACATTTACCCGCTTCTGAAACTGAAAATGGCTGCTAGACATGCGGAGAAGCAGATCCCGCCGGAGTCTCATTGGGGATTCTGCTACACCATGTTGCATAAGGTCTCAAGAAGTTTTGCTCTCGTTATTCAACAGCTTAAGCCCGAGCTTCGGAATGCTGTATGCATATTCTATCTTGTTCTTCGTGCCCTCGACACTGTTGGTATGTAATGAACTCGTACTTCTTTGAGAAGTTTAATGGTTTTTTCTCCTGTAATAATGACTATAATGGCATTTTGGTGGCTTTATATTGCGTTTGACTAACCTTCTTTTTATATATCTCATGTTATCTTAGTCCTACCGAATGAACTTAAGTTCGTTATCCTAAGTTTGTAACCTAGCCCGGCTAAGATGAGAGGTAAGGTCAATTTGACTCGAATCCTGTACCTGATCTTTAATCCTACACCAGTTAATGATGGGGAGAAGTTTCTCTCTTTATCATTTTTTCATCAATGTTGGCCCAGTGCTCGTCCATGCCCAATCCTAATGGACAAACCTTCGATCTGATTTGTCCCTAGCTCTATAATCCAGCCGTCTTCCTTAGTCCCATCAAGCCCTCCTCTCCAAGGCCTTGCCCTCTTTCTCAACTCAAGTCTTTCTCACTTGGGTACTCATAATCTTCATAGTTGGCAATTCAATTGAAGACGATCAATCCCATCTTAATATGTTAATCGAGAAAAACTCGTTATCTTTTTTCTAATTATATAGTTACATATGTATGTACGAAGAACATGTCGAAATTCATGCTGGTTTCTTTTTTATTTGGATTAGCCTAATGGTCCTAAAATTTATTTTATCTTTACAGAGGATGACACAAGCATACAAACAGATATCAAAGTACCAATTCTGAAAGCTTTTCACTGTCAGATATATAACCGTGATTGGCATTTTTCATGTGGCACAAAGGACTATAAAGTTCTTATGGATGAGTTTCATCACGTTTCAACTGCGTTCCTAGAACTCGGGAGAGGGTACCAGGAAGCAATTGAGGATATCACGAAACGGATGGGCGCAGGAATGGCCAAATTCATTTGCAAAGAGGTAGAGACAGTTGAAGATTATGATGAATATTGTCACTACGTAGCTGGACTTGTCGGACTAGGTTTATCCAAGCTGTTCCACGCTTCGAAGTCAGAGGACTTGGCACCCGATTCTCTTTCAAATTCTATGGGATTGTTTCTTCAGAAAACGAATATTATTCGAGATTACTTGGAGGATATCAATGAGATACCAAAGTCTAGGATGTTTTGGCCTCGTGAGATTTGGAGCAAATATGCTGATAAACTAGAGGATTTTAAATACGAGAAGAATTCAGTCAAGGCCGTGCAATGCCTCAATGATTTGGTCACTAATGCATTGACCCATGTGGAGGATTGCCTAGAATACATGTCTAACTTGAAAGATCTTTCCATATTTCGATTTTGTGCAATCCCTCAGATTATGGCAATTGGAACACTAGCATTATGCTACAACAATGTTGACGTCTTCAGAGGGGTCGTCAAAATGCGTCGGGGTCTTACTGCAAAGGTCATTTATCGAACGAAAACGATGGCTGACGTCTATGGAGCTTTCTTTGATTTTTCTGTTATGCTGAAGGCTAAGGTCAACAGCAGTGATCCTAATGCTTCTAAAACCCTGACCAGGATTGAGGCAATACAGAAAACATGCAAGCAGTCGGGGCTATTGAACAAGAGGTTCGTATTTTTCGTCCTCGGGAATTGTATGCAGTACGAAGTGAGCCCATGTGCAATCCAGCTGCGATTGTCGTACTTTTCAGCCTATTATGCATCATTCTCGCTTATCTCTCCGCTAAACGATTACCAGCTAACCAACCAGTATGAACGTCAAAGTCCGGGTACGAGTTTCAACAGAACGCACCGTGAACATGGGCAGTAAGTTTCAGTTTGTAGCTCAATTATTGTCTGAGTTTTGTTTGAATATTACAATGGCTGTAAGTTAGTGTTTGTTTAGTACAGAGCATGAAACAAGTGAAATTCTGTAACCTTCTAATTCTTCTTTTTCAATCTTCTAATAAGAGATTACGTCTTGGAATTATAATTTCTTCACAAATGGTGTTTCAGTACCCTGTGGATTGTTTATTTGTGTTTTTTTTTTTTTTTCCCAGAAAAAAAATT

Coding sequence (CDS)

ATGGATGAGTTTCATCACGTTTCAACTGCGTTCCTAGAACTCGGGAGAGGGTACCAGGAAGCAATTGAGGATATCACGAAACGGATGGGCGCAGGAATGGCCAAATTCATTTGCAAAGAGGTAGAGACAGTTGAAGATTATGATGAATATTGTCACTACGTAGCTGGACTTGTCGGACTAGGTTTATCCAAGCTGTTCCACGCTTCGAAGTCAGAGGACTTGGCACCCGATTCTCTTTCAAATTCTATGGGATTGTTTCTTCAGAAAACGAATATTATTCGAGATTACTTGGAGGATATCAATGAGATACCAAAGTCTAGGATGTTTTGGCCTCGTGAGATTTGGAGCAAATATGCTGATAAACTAGAGGATTTTAAATACGAGAAGAATTCAGTCAAGGCCGTGCAATGCCTCAATGATTTGGTCACTAATGCATTGACCCATGTGGAGGATTGCCTAGAATACATGTCTAACTTGAAAGATCTTTCCATATTTCGATTTTGTGCAATCCCTCAGATTATGGCAATTGGAACACTAGCATTATGCTACAACAATGTTGACGTCTTCAGAGGGGTCGTCAAAATGCGTCGGGGTCTTACTGCAAAGGTCATTTATCGAACGAAAACGATGGCTGACGTCTATGGAGCTTTCTTTGATTTTTCTGTTATGCTGAAGGCTAAGGTCAACAGCAGTGATCCTAATGCTTCTAAAACCCTGACCAGGATTGAGGCAATACAGAAAACATGCAAGCAGTCGGGGCTATTGAACAAGAGGTTCGTATTTTTCGTCCTCGGGAATTGTATGCAGTACGAAGTGAGCCCATGTGCAATCCAGCTGCGATTGTCGTACTTTTCAGCCTATTATGCATCATTCTCGCTTATCTCTCCGCTAAACGATTACCAGCTAACCAACCAGTATGAACGTCAAAGTCCGGGTACGAGTTTCAACAGAACGCACCGTGAACATGGGCAGTAA

Protein sequence

MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFSLISPLNDYQLTNQYERQSPGTSFNRTHREHGQ

Homology

[Close]

BLAST of Carg25948-RA vs. NCBI nr
Match: KAG7010894.1 (hypothetical protein SDJN02_27692 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 656.8 bits (1693), Expect = 1.0e-184
Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL
Sbjct: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD
Sbjct: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA
Sbjct: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT
Sbjct: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240

Query: 241 RIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFSLISPLNDY 300
           RIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFSLISPLNDY
Sbjct: 241 RIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFSLISPLNDY 300

Query: 301 QLTNQYERQSPGTSFNRTHREHGQ 325
           QLTNQYERQSPGTSFNRTHREHGQ
Sbjct: 301 QLTNQYERQSPGTSFNRTHREHGQ 324

[Close]

BLAST of Carg25948-RA vs. NCBI nr
Match: KAG6571079.1 (Squalene synthase 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 557.8 bits (1436), Expect = 6.3e-155
Identity = 286/324 (88.27%), Postives = 289/324 (89.20%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL
Sbjct: 119 MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD
Sbjct: 179 GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA
Sbjct: 239 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT
Sbjct: 299 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFSLISPLNDY 300
           RIEAIQKTCKQSGLLNKR ++ V    M    +P AI                       
Sbjct: 359 RIEAIQKTCKQSGLLNKRELYAVRSEPM---CNPAAI----------------------- 416

Query: 301 QLTNQYERQSPGTSFNRTHREHGQ 325
            LTNQYERQSPGTSFNRTHREHGQ
Sbjct: 419 VLTNQYERQSPGTSFNRTHREHGQ 416

[Close]

BLAST of Carg25948-RA vs. NCBI nr
Match: XP_022943420.1 (squalene synthase-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 526.6 bits (1355), Expect = 1.6e-145
Identity = 263/282 (93.26%), Postives = 267/282 (94.68%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL
Sbjct: 119 MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHASKSE+LAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD
Sbjct: 179 GLSKLFHASKSENLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA
Sbjct: 239 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT
Sbjct: 299 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLS 283
           RIEAIQKTCKQSGLLNKR ++ V    M    +P     RLS
Sbjct: 359 RIEAIQKTCKQSGLLNKRELYAVRSEPMCNPAAPIMHHSRLS 400

[Close]

BLAST of Carg25948-RA vs. NCBI nr
Match: XP_022943419.1 (squalene synthase-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 523.5 bits (1347), Expect = 1.3e-144
Identity = 265/292 (90.75%), Postives = 270/292 (92.47%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL
Sbjct: 119 MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHASKSE+LAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD
Sbjct: 179 GLSKLFHASKSENLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA
Sbjct: 239 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT
Sbjct: 299 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFS 293
           RIEAIQKTCKQSGLLNKR ++ V    M    +P AI +  S      A  S
Sbjct: 359 RIEAIQKTCKQSGLLNKRELYAVRSEPM---CNPAAIVVLFSLLCIILAYLS 407

[Close]

BLAST of Carg25948-RA vs. NCBI nr
Match: XP_022986545.1 (squalene synthase-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 520.4 bits (1339), Expect = 1.1e-143
Identity = 260/282 (92.20%), Postives = 266/282 (94.33%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL
Sbjct: 119 MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD
Sbjct: 179 GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLEDFKYE+NSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA
Sbjct: 239 KLEDFKYEENSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVML+AKVNSS PNASKTL+
Sbjct: 299 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLEAKVNSSYPNASKTLS 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLS 283
           RIEAIQKTCKQSGLLNKR ++ V    M    +P     RLS
Sbjct: 359 RIEAIQKTCKQSGLLNKRELYAVRSEPMCNPAAPIMHHSRLS 400

[Close]

BLAST of Carg25948-RA vs. ExPASy Swiss-Prot
Match: O48666 (Squalene synthase 1 OS=Panax ginseng OX=4054 GN=SS1 PE=2 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 7.6e-127
Identity = 223/295 (75.59%), Postives = 253/295 (85.76%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVS AFLELG GYQEAIEDIT RMGAGMAKFICKEVET+ DYDEYCHYVAGLVGL
Sbjct: 119 MDEFHHVSNAFLELGSGYQEAIEDITMRMGAGMAKFICKEVETINDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHAS +EDLA DSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPR+IWSKY D
Sbjct: 179 GLSKLFHASGAEDLATDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVD 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLED KYE+NS KAVQCLND+VT+AL H EDCL+YMS+L+  +IFRFCAIPQIMAIGTLA
Sbjct: 239 KLEDLKYEENSAKAVQCLNDMVTDALVHAEDCLKYMSDLRGPAIFRFCAIPQIMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LC+NN  VFRGVVKMRRGLTAKVI +TKTM+DVYGAFFDFS +LK+KV+++DPNA+KTL+
Sbjct: 299 LCFNNTQVFRGVVKMRRGLTAKVIDQTKTMSDVYGAFFDFSCLLKSKVDNNDPNATKTLS 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFSLIS 296
           R+EAIQKTCK+SG L+KR  + +             I + L+   AY +S  L++
Sbjct: 359 RLEAIQKTCKESGTLSKRKSYIIESESGHNSALIAIIFIILAILYAYLSSNLLLN 413

[Close]

BLAST of Carg25948-RA vs. ExPASy Swiss-Prot
Match: D0VFU8 (Squalene synthase OS=Solanum lycopersicum OX=4081 GN=SS PE=1 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 9.9e-127
Identity = 217/263 (82.51%), Postives = 241/263 (91.63%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MD+FHHVSTAFLELG+ YQ+AIEDIT RMGAGMAKFICKEVET +DYDEYCHYVAGLVGL
Sbjct: 119 MDQFHHVSTAFLELGKLYQQAIEDITMRMGAGMAKFICKEVETTDDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHAS  EDLA DSLSNSMGLFLQKTNIIRDYLEDINE+PK RMFWPREIWSKY +
Sbjct: 179 GLSKLFHASGKEDLASDSLSNSMGLFLQKTNIIRDYLEDINEVPKCRMFWPREIWSKYVN 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLED KYE+NSVKAVQCLND+VTNAL+HVEDCL YM NL D +IFRFCAIPQ+MAIGTLA
Sbjct: 239 KLEDLKYEENSVKAVQCLNDMVTNALSHVEDCLTYMFNLHDPAIFRFCAIPQVMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           +CY+N++VFRGVVKMRRGLTAKVI RTKTMADVYGAFFDFS MLK+KVN++DPNA+KTL 
Sbjct: 299 MCYDNIEVFRGVVKMRRGLTAKVIDRTKTMADVYGAFFDFSCMLKSKVNNNDPNATKTLK 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFV 264
           R++AI KTC+ SG LNKR  + +
Sbjct: 359 RLDAILKTCRDSGTLNKRKSYII 381

[Close]

BLAST of Carg25948-RA vs. ExPASy Swiss-Prot
Match: C9E894 (Squalene synthase 2 OS=Panax ginseng OX=4054 GN=SS2 PE=2 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 2.2e-126
Identity = 223/291 (76.63%), Postives = 253/291 (86.94%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVS AFL+LG GY+EAIEDIT RMGAGMAKFICKEVET++DYDEYCHYVAGLVGL
Sbjct: 119 MDEFHHVSNAFLDLGSGYKEAIEDITMRMGAGMAKFICKEVETIDDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHAS +EDLA DSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPR+IWSKY D
Sbjct: 179 GLSKLFHASGAEDLATDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVD 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLED KYE+NS KAVQCLND+VTNAL HVEDCL+YMS+L+D +IFRFCAIPQIM+IGTLA
Sbjct: 239 KLEDLKYEENSGKAVQCLNDMVTNALLHVEDCLKYMSDLRDPAIFRFCAIPQIMSIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LCYNN+ VFRGVVKMRRGLTAKVI RT TM+DVYGAFFDFS MLK+KV+++DPNA+KTL+
Sbjct: 299 LCYNNIQVFRGVVKMRRGLTAKVIDRTNTMSDVYGAFFDFSCMLKSKVDNNDPNATKTLS 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQ-LRLSYFSAYYAS 291
           R+EAIQK CK SG L  +   +++ N   Y  +   I  + L+   AY +S
Sbjct: 359 RLEAIQKICKNSGALTTKRKSYIIENESGYNSTLIVILFIILAILYAYLSS 409

[Close]

BLAST of Carg25948-RA vs. ExPASy Swiss-Prot
Match: A0A1P7Y0C9 (Squalene synthase 8 OS=Panax ginseng OX=4054 GN=SS8 PE=2 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 2.2e-126
Identity = 216/262 (82.44%), Postives = 242/262 (92.37%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVS AFL+LG  Y+EAIEDIT RMGAGMAKFICKEVET++DYDEYCHYVAGLVGL
Sbjct: 119 MDEFHHVSNAFLDLGSSYKEAIEDITMRMGAGMAKFICKEVETIDDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHAS +EDLA DSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPR+IWSKY D
Sbjct: 179 GLSKLFHASGAEDLATDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVD 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLED KYE+NS KAVQCLND+VT+AL H EDCL+YMS+L+  +IFRFCAIPQIMAIGTLA
Sbjct: 239 KLEDLKYEENSAKAVQCLNDMVTDALVHAEDCLKYMSDLRGPAIFRFCAIPQIMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LC+NN  VFRGVVKMRRGLTAKVI +TKTM+DVYGAFFDFS +LK+KV+++DPNA+KTL+
Sbjct: 299 LCFNNTQVFRGVVKMRRGLTAKVIDQTKTMSDVYGAFFDFSCLLKSKVDNNDPNATKTLS 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFF 263
           R+EAIQKTCK+SG L+KRF  F
Sbjct: 359 RLEAIQKTCKESGTLSKRFCVF 380

[Close]

BLAST of Carg25948-RA vs. ExPASy Swiss-Prot
Match: D2K762 (Squalene synthase 3 OS=Panax ginseng OX=4054 GN=SS3 PE=2 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 1.1e-125
Identity = 216/266 (81.20%), Postives = 241/266 (90.60%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVS AFL+LG  Y+EAIEDIT RMGAGMAKFICKEVET++DYDEYCHYVAGLVGL
Sbjct: 119 MDEFHHVSNAFLDLGSSYKEAIEDITMRMGAGMAKFICKEVETIDDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHAS +EDLA DSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPR+IWSKY D
Sbjct: 179 GLSKLFHASGAEDLATDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVD 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLED KYE+NS KAVQCLND+VTNAL HVEDCL+YMS+L+D +IFRFCAIPQIMAIGTLA
Sbjct: 239 KLEDLKYEENSGKAVQCLNDMVTNALLHVEDCLKYMSDLRDPAIFRFCAIPQIMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LCYNN+ VFRGVVKMRRGLTAKVI RT TM+DVYG FFDFS MLK+KV+++DPNA+KTL+
Sbjct: 299 LCYNNIQVFRGVVKMRRGLTAKVIDRTNTMSDVYGTFFDFSCMLKSKVDNNDPNATKTLS 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFVLGN 267
           R+EAIQK CK SG L  +   +++ N
Sbjct: 359 RLEAIQKICKNSGALTTKRKSYIIEN 384

[Close]

BLAST of Carg25948-RA vs. ExPASy TrEMBL
Match: A0A6J1FXS8 (Squalene synthase OS=Cucurbita moschata OX=3662 GN=LOC111448190 PE=3 SV=1)

HSP 1 Score: 526.6 bits (1355), Expect = 7.6e-146
Identity = 263/282 (93.26%), Postives = 267/282 (94.68%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL
Sbjct: 119 MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHASKSE+LAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD
Sbjct: 179 GLSKLFHASKSENLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA
Sbjct: 239 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT
Sbjct: 299 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLS 283
           RIEAIQKTCKQSGLLNKR ++ V    M    +P     RLS
Sbjct: 359 RIEAIQKTCKQSGLLNKRELYAVRSEPMCNPAAPIMHHSRLS 400

[Close]

BLAST of Carg25948-RA vs. ExPASy TrEMBL
Match: A0A6J1FU93 (Squalene synthase OS=Cucurbita moschata OX=3662 GN=LOC111448190 PE=3 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 6.4e-145
Identity = 265/292 (90.75%), Postives = 270/292 (92.47%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL
Sbjct: 119 MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHASKSE+LAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD
Sbjct: 179 GLSKLFHASKSENLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA
Sbjct: 239 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT
Sbjct: 299 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFS 293
           RIEAIQKTCKQSGLLNKR ++ V    M    +P AI +  S      A  S
Sbjct: 359 RIEAIQKTCKQSGLLNKRELYAVRSEPM---CNPAAIVVLFSLLCIILAYLS 407

[Close]

BLAST of Carg25948-RA vs. ExPASy TrEMBL
Match: A0A6J1JEC3 (Squalene synthase OS=Cucurbita maxima OX=3661 GN=LOC111484252 PE=3 SV=1)

HSP 1 Score: 520.4 bits (1339), Expect = 5.4e-144
Identity = 260/282 (92.20%), Postives = 266/282 (94.33%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL
Sbjct: 119 MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD
Sbjct: 179 GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLEDFKYE+NSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA
Sbjct: 239 KLEDFKYEENSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVML+AKVNSS PNASKTL+
Sbjct: 299 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLEAKVNSSYPNASKTLS 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLS 283
           RIEAIQKTCKQSGLLNKR ++ V    M    +P     RLS
Sbjct: 359 RIEAIQKTCKQSGLLNKRELYAVRSEPMCNPAAPIMHHSRLS 400

[Close]

BLAST of Carg25948-RA vs. ExPASy TrEMBL
Match: A0A6J1JGC1 (Squalene synthase OS=Cucurbita maxima OX=3661 GN=LOC111484252 PE=3 SV=1)

HSP 1 Score: 518.5 bits (1334), Expect = 2.1e-143
Identity = 263/292 (90.07%), Postives = 269/292 (92.12%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL
Sbjct: 119 MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD
Sbjct: 179 GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLEDFKYE+NSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA
Sbjct: 239 KLEDFKYEENSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVML+AKVNSS PNASKTL+
Sbjct: 299 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLEAKVNSSYPNASKTLS 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFS 293
           RIEAIQKTCKQSGLLNKR ++ V    M    +P AI L  S      A  S
Sbjct: 359 RIEAIQKTCKQSGLLNKRELYAVRSEPM---CNPAAIVLLFSLLCIILAYLS 407

[Close]

BLAST of Carg25948-RA vs. ExPASy TrEMBL
Match: A0A2R2WEW6 (Squalene synthase OS=Luffa acutangula OX=56866 PE=2 SV=1)

HSP 1 Score: 507.3 bits (1305), Expect = 4.7e-140
Identity = 249/263 (94.68%), Postives = 257/263 (97.72%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVSTAFLELG+GYQEAIEDITKRMGAGMAKFICKEVETV+DYDEYCHYVAGLVGL
Sbjct: 119 MDEFHHVSTAFLELGKGYQEAIEDITKRMGAGMAKFICKEVETVDDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHASK EDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD
Sbjct: 179 GLSKLFHASKLEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLEDFKYEKNSVKAVQCLNDLVTNAL HVEDCL+YMSNL+DLSIFRFCAIPQIMAIGTLA
Sbjct: 239 KLEDFKYEKNSVKAVQCLNDLVTNALNHVEDCLKYMSNLRDLSIFRFCAIPQIMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LCYNNV VFRGVVKMRRGLTAKVI RTKTMADVYGAFFDFSVMLKAKVN+SDPNASKTL+
Sbjct: 299 LCYNNVQVFRGVVKMRRGLTAKVIDRTKTMADVYGAFFDFSVMLKAKVNNSDPNASKTLS 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFV 264
           RIEAIQKTCKQSGLLNKR ++ V
Sbjct: 359 RIEAIQKTCKQSGLLNKRKLYVV 381

[Close]

BLAST of Carg25948-RA vs. TAIR 10
Match: AT4G34640.1 (squalene synthase 1 )

HSP 1 Score: 432.6 bits (1111), Expect = 2.9e-121
Identity = 208/260 (80.00%), Postives = 235/260 (90.38%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MD+FHHVS AFLEL +GYQEAIE+IT+RMGAGMAKFIC+EVETV+DYDEYCHYVAGLVGL
Sbjct: 119 MDQFHHVSAAFLELEKGYQEAIEEITRRMGAGMAKFICQEVETVDDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPD--SLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKY 120
           GLSKLF A+ SE L PD  ++SNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIW KY
Sbjct: 179 GLSKLFLAAGSEVLTPDWEAISNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWGKY 238

Query: 121 ADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGT 180
           ADKLED KYE+N+ K+VQCLN++VTNAL H+EDCL+YM +L+D SIFRFCAIPQIMAIGT
Sbjct: 239 ADKLEDLKYEENTNKSVQCLNEMVTNALMHIEDCLKYMVSLRDPSIFRFCAIPQIMAIGT 298

Query: 181 LALCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKT 240
           LALCYNN  VFRGVVK+RRGLTAKVI RTKTMADVYGAF+DFS MLK KV+ +DPNASKT
Sbjct: 299 LALCYNNEQVFRGVVKLRRGLTAKVIDRTKTMADVYGAFYDFSCMLKTKVDKNDPNASKT 358

Query: 241 LTRIEAIQKTCKQSGLLNKR 259
           L R+EA+QK C+ +G+L  R
Sbjct: 359 LNRLEAVQKLCRDAGVLQNR 378

[Close]

BLAST of Carg25948-RA vs. TAIR 10
Match: AT4G34650.1 (squalene synthase 2 )

HSP 1 Score: 406.0 bits (1042), Expect = 2.9e-113
Identity = 195/260 (75.00%), Postives = 228/260 (87.69%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MD+FHHVS AFL+L +GYQEAIEDITKRMGAGMAKFICKEVET++DYDEYCHY AGLVGL
Sbjct: 119 MDQFHHVSAAFLKLEKGYQEAIEDITKRMGAGMAKFICKEVETIDDYDEYCHYAAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPD--SLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKY 120
           GLSK+F AS+ E L PD   +SNS GLFLQKTNII+DYLEDINE PKSRMFWPREIW KY
Sbjct: 179 GLSKIFIASELEILTPDWKQISNSTGLFLQKTNIIKDYLEDINERPKSRMFWPREIWGKY 238

Query: 121 ADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGT 180
            DKLEDFK E+ + KAVQCLN++VTNAL HVEDCL+ +++L+D +IF+ CAIPQI+AIGT
Sbjct: 239 VDKLEDFKNEEKATKAVQCLNEMVTNALNHVEDCLKSLASLRDPAIFQSCAIPQIVAIGT 298

Query: 181 LALCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKT 240
           LALCYNNV VFRGVV++RRGL AKVI RTKTM DVYGAF+DFS ML+ KV+++DPNA KT
Sbjct: 299 LALCYNNVQVFRGVVRLRRGLIAKVIDRTKTMDDVYGAFYDFSCMLQTKVDNNDPNAMKT 358

Query: 241 LTRIEAIQKTCKQSGLLNKR 259
           L R+E I+K CK++G L+KR
Sbjct: 359 LNRLETIKKFCKENGGLHKR 378

The following BLAST results are available for this feature:

BLAST of Carg25948-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010894.1	1.0e-184	100.00	hypothetical protein SDJN02_27692 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6571079.1	6.3e-155	88.27	Squalene synthase 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022943420.1	1.6e-145	93.26	squalene synthase-like isoform X2 [Cucurbita moschata]	[more]
XP_022943419.1	1.3e-144	90.75	squalene synthase-like isoform X1 [Cucurbita moschata]	[more]
XP_022986545.1	1.1e-143	92.20	squalene synthase-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg25948-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48666	7.6e-127	75.59	Squalene synthase 1 OS=Panax ginseng OX=4054 GN=SS1 PE=2 SV=1	[more]
D0VFU8	9.9e-127	82.51	Squalene synthase OS=Solanum lycopersicum OX=4081 GN=SS PE=1 SV=1	[more]
C9E894	2.2e-126	76.63	Squalene synthase 2 OS=Panax ginseng OX=4054 GN=SS2 PE=2 SV=1	[more]
A0A1P7Y0C9	2.2e-126	82.44	Squalene synthase 8 OS=Panax ginseng OX=4054 GN=SS8 PE=2 SV=1	[more]
D2K762	1.1e-125	81.20	Squalene synthase 3 OS=Panax ginseng OX=4054 GN=SS3 PE=2 SV=1	[more]

BLAST of Carg25948-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FXS8	7.6e-146	93.26	Squalene synthase OS=Cucurbita moschata OX=3662 GN=LOC111448190 PE=3 SV=1	[more]
A0A6J1FU93	6.4e-145	90.75	Squalene synthase OS=Cucurbita moschata OX=3662 GN=LOC111448190 PE=3 SV=1	[more]
A0A6J1JEC3	5.4e-144	92.20	Squalene synthase OS=Cucurbita maxima OX=3661 GN=LOC111484252 PE=3 SV=1	[more]
A0A6J1JGC1	2.1e-143	90.07	Squalene synthase OS=Cucurbita maxima OX=3661 GN=LOC111484252 PE=3 SV=1	[more]
A0A2R2WEW6	4.7e-140	94.68	Squalene synthase OS=Luffa acutangula OX=56866 PE=2 SV=1	[more]

BLAST of Carg25948-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G34640.1	2.9e-121	80.00	squalene synthase 1	[more]
AT4G34650.1	2.9e-113	75.00	squalene synthase 2	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002060	Squalene/phytoene synthase	PFAM	PF00494	SQS_PSY	coord: 3..197 e-value: 7.3E-31 score: 107.6
IPR006449	Squalene synthase-like	TIGRFAM	TIGR01559	TIGR01559	coord: 1..249 e-value: 1.9E-117 score: 390.2
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10	Farnesyl Diphosphate Synthase	coord: 1..249 e-value: 3.3E-88 score: 298.1
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	48576	Terpenoid synthases	coord: 2..249
IPR044844	Trans-isoprenyl diphosphate synthases, eukaryotic-type	PANTHER	PTHR11626	FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE	coord: 1..264
None	No IPR available	PANTHER	PTHR11626:SF5	SQUALENE SYNTHASE-LIKE ISOFORM X1	coord: 1..264
IPR019845	Squalene/phytoene synthase, conserved site	PROSITE	PS01044	SQUALEN_PHYTOEN_SYN_1	coord: 50..65
IPR019845	Squalene/phytoene synthase, conserved site	PROSITE	PS01045	SQUALEN_PHYTOEN_SYN_2	coord: 83..111
IPR033904	Trans-isoprenyl diphosphate synthases, head-to-head	CDD	cd00683	Trans_IPPS_HH	coord: 1..202 e-value: 2.2712E-64 score: 202.465

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg25948	Carg25948	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25948-RA:13	Carg25948-RA:13	exon
Carg25948-RA:12	Carg25948-RA:12	exon
Carg25948-RA:11	Carg25948-RA:11	exon
Carg25948-RA:10	Carg25948-RA:10	exon
Carg25948-RA:9	Carg25948-RA:9	exon
Carg25948-RA:8	Carg25948-RA:8	exon
Carg25948-RA:7	Carg25948-RA:7	exon
Carg25948-RA:6	Carg25948-RA:6	exon
Carg25948-RA:5	Carg25948-RA:5	exon
Carg25948-RA:4	Carg25948-RA:4	exon
Carg25948-RA:3	Carg25948-RA:3	exon
Carg25948-RA:2	Carg25948-RA:2	exon
Carg25948-RA:1	Carg25948-RA:1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25948-RA:three_prime_utr	Carg25948-RA:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25948-RA:cds	Carg25948-RA:cds_11	CDS
Carg25948-RA:cds	Carg25948-RA:cds_10	CDS
Carg25948-RA:cds	Carg25948-RA:cds_9	CDS
Carg25948-RA:cds	Carg25948-RA:cds_8	CDS
Carg25948-RA:cds	Carg25948-RA:cds_7	CDS
Carg25948-RA:cds	Carg25948-RA:cds_6	CDS
Carg25948-RA:cds	Carg25948-RA:cds_5	CDS
Carg25948-RA:cds	Carg25948-RA:cds_4	CDS
Carg25948-RA:cds	Carg25948-RA:cds_3	CDS
Carg25948-RA:cds	Carg25948-RA:cds_2	CDS
Carg25948-RA:cds	Carg25948-RA:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25948-RA:five_prime_utr	Carg25948-RA:five_prime_utr_3	five_prime_UTR
Carg25948-RA:five_prime_utr	Carg25948-RA:five_prime_utr_2	five_prime_UTR
Carg25948-RA:five_prime_utr	Carg25948-RA:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg25948-RA	Carg25948-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0008610	lipid biosynthetic process
biological_process	GO:0045338	farnesyl diphosphate metabolic process
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004310	farnesyl-diphosphate farnesyltransferase activity
molecular_function	GO:0004311	farnesyltranstransferase activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups
molecular_function	GO:0051996	squalene synthase activity