Carg25943-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25943-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	B-box zinc finger protein 20-like
Location	Carg_Chr20: 4019655 .. 4020302 (-)
Sequence length	648
RNA-Seq Expression	Carg25943-RA
Synteny	Carg25943-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATCCGTTGTGATGTTTGCAACAAAGAAGAAGCCTCTGTGTTTTGCCCCTCCGACGAAGCCGCCCTCTGCTCTGCCTGCGACCACCACGTACACCGTGCCAACAAGCTCGCCGAGAAACACAGCCGATTCACACTCCTCCGATCCACTCCCACCGCCAATTCACCGCCGTCGTGCGATATCTGCCAGGTCCGGCGAGCGTTTCTATTCTGTCTTGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACGGCGCCAGCGAACACACCCAGAAACACAGCCGGTTTCTTCTCACTGGTGTGAAGGTCTCACCGTCACCGGCGACTTCCTCTTCCTCCTCCACTGTCTCCGGCGGCGGCAGCGATGAAAGCGAGGAGGTTACAATTGAAGCTGAAATTGGGATCTTTAAGGCAAGCTCGAGGAAGAAAGCGAAAATGGGGTCAAAAGGGTTGCTTCGAGGTCCTCTAATGGAGGATTTACAGGCACCGATTGTTGGGAATTTTGGTGGAATGAGTGAAAATGGGGTTTCGTTTTCGACAAGTAACATATCGGAGTATTTGGAGAGCTTGCCGGGTTGGTGCGTGGAGGAGTTTCTTGATTCTTCGTGTGTTGCTGATGTTTTCTGTAAAGTTTGA

mRNA sequence

ATGAAGATCCGTTGTGATGTTTGCAACAAAGAAGAAGCCTCTGTGTTTTGCCCCTCCGACGAAGCCGCCCTCTGCTCTGCCTGCGACCACCACGTACACCGTGCCAACAAGCTCGCCGAGAAACACAGCCGATTCACACTCCTCCGATCCACTCCCACCGCCAATTCACCGCCGTCGTGCGATATCTGCCAGGTCCGGCGAGCGTTTCTATTCTGTCTTGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACGGCGCCAGCGAACACACCCAGAAACACAGCCGGTTTCTTCTCACTGGTGTGAAGGTCTCACCGTCACCGGCGACTTCCTCTTCCTCCTCCACTGTCTCCGGCGGCGGCAGCGATGAAAGCGAGGAGGTTACAATTGAAGCTGAAATTGGGATCTTTAAGGCAAGCTCGAGGAAGAAAGCGAAAATGGGGTCAAAAGGGTTGCTTCGAGGTCCTCTAATGGAGGATTTACAGGCACCGATTGTTGGGAATTTTGGTGGAATGAGTGAAAATGGGGTTTCGTTTTCGACAAGTAACATATCGGAGTATTTGGAGAGCTTGCCGGGTTGGTGCGTGGAGGAGTTTCTTGATTCTTCGTGTGTTGCTGATGTTTTCTGTAAAGTTTGA

Coding sequence (CDS)

ATGAAGATCCGTTGTGATGTTTGCAACAAAGAAGAAGCCTCTGTGTTTTGCCCCTCCGACGAAGCCGCCCTCTGCTCTGCCTGCGACCACCACGTACACCGTGCCAACAAGCTCGCCGAGAAACACAGCCGATTCACACTCCTCCGATCCACTCCCACCGCCAATTCACCGCCGTCGTGCGATATCTGCCAGGTCCGGCGAGCGTTTCTATTCTGTCTTGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACGGCGCCAGCGAACACACCCAGAAACACAGCCGGTTTCTTCTCACTGGTGTGAAGGTCTCACCGTCACCGGCGACTTCCTCTTCCTCCTCCACTGTCTCCGGCGGCGGCAGCGATGAAAGCGAGGAGGTTACAATTGAAGCTGAAATTGGGATCTTTAAGGCAAGCTCGAGGAAGAAAGCGAAAATGGGGTCAAAAGGGTTGCTTCGAGGTCCTCTAATGGAGGATTTACAGGCACCGATTGTTGGGAATTTTGGTGGAATGAGTGAAAATGGGGTTTCGTTTTCGACAAGTAACATATCGGAGTATTTGGAGAGCTTGCCGGGTTGGTGCGTGGAGGAGTTTCTTGATTCTTCGTGTGTTGCTGATGTTTTCTGTAAAGTTTGA

Protein sequence

MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTANSPPSCDICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTVSGGGSDESEEVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGVSFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV

Homology

[Close]

BLAST of Carg25943-RA vs. NCBI nr
Match: KAG6571083.1 (B-box zinc finger protein 21, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010899.1 B-box zinc finger protein 21, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 434.1 bits (1115), Expect = 7.0e-118
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTANSPPSC 60
           MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTANSPPSC
Sbjct: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTANSPPSC 60

Query: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTV 120
           DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTV
Sbjct: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTV 120

Query: 121 SGGGSDESEEVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGV 180
           SGGGSDESEEVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGV
Sbjct: 121 SGGGSDESEEVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGV 180

Query: 181 SFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV 216
           SFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV
Sbjct: 181 SFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV 215

[Close]

BLAST of Carg25943-RA vs. NCBI nr
Match: XP_022944246.1 (B-box zinc finger protein 20-like [Cucurbita moschata])

HSP 1 Score: 430.3 bits (1105), Expect = 1.0e-116
Identity = 213/215 (99.07%), Postives = 213/215 (99.07%), Query Frame = 0


Query: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTANSPPSC 60
           MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPT NSPPSC
Sbjct: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTGNSPPSC 60

Query: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTV 120
           DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTV
Sbjct: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTV 120

Query: 121 SGGGSDESEEVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGV 180
           SGGGSDES EVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGV
Sbjct: 121 SGGGSDESAEVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGV 180

Query: 181 SFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV 216
           SFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV
Sbjct: 181 SFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV 215

[Close]

BLAST of Carg25943-RA vs. NCBI nr
Match: XP_022986607.1 (B-box zinc finger protein 20-like [Cucurbita maxima])

HSP 1 Score: 415.2 bits (1066), Expect = 3.4e-112
Identity = 207/215 (96.28%), Postives = 210/215 (97.67%), Query Frame = 0


Query: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTANSPPSC 60
           MKI CDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTL RSTPTANSPPSC
Sbjct: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTANSPPSC 60

Query: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTV 120
           DICQVRRAFLF LEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSS++
Sbjct: 61  DICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSSI 120

Query: 121 SGGGSDESEEVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGV 180
           SGGG DESEEVTIEAEIGIFKA SRK+AKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGV
Sbjct: 121 SGGG-DESEEVTIEAEIGIFKARSRKEAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGV 180

Query: 181 SFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV 216
           SFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV
Sbjct: 181 SFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV 214

[Close]

BLAST of Carg25943-RA vs. NCBI nr
Match: XP_023513248.1 (B-box zinc finger protein 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 407.1 bits (1045), Expect = 9.2e-110
Identity = 201/215 (93.49%), Postives = 207/215 (96.28%), Query Frame = 0


Query: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTANSPPSC 60
           MKIRCDVCN+EEASVFCPSDEAALCSACDHHVH ANKLAEKHSRFTLLRSTPT NSPPSC
Sbjct: 1   MKIRCDVCNREEASVFCPSDEAALCSACDHHVHCANKLAEKHSRFTLLRSTPTVNSPPSC 60

Query: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTV 120
           DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSP TSSSSS+V
Sbjct: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPTTSSSSSSV 120

Query: 121 SGGGSDESEEVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGV 180
           SGGG DESEEVTIEAEIGIFK  SRK+AKMGSKGL+RGP+MEDLQ PIVG FGGMSENGV
Sbjct: 121 SGGG-DESEEVTIEAEIGIFKTRSRKEAKMGSKGLIRGPVMEDLQPPIVGKFGGMSENGV 180

Query: 181 SFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV 216
           +FSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV
Sbjct: 181 AFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV 214

[Close]

BLAST of Carg25943-RA vs. NCBI nr
Match: XP_038902472.1 (B-box zinc finger protein 21-like [Benincasa hispida])

HSP 1 Score: 285.0 bits (728), Expect = 5.3e-73
Identity = 156/220 (70.91%), Postives = 173/220 (78.64%), Query Frame = 0


Query: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTA-NSPPS 60
           MKIRCDVC+KEEASVFCPSDEAALC+ACD HVHRANKLA KH+RF+LL+ST  A +S P 
Sbjct: 1   MKIRCDVCDKEEASVFCPSDEAALCAACDRHVHRANKLAGKHNRFSLLQSTAAAVDSLPL 60

Query: 61  CDICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPAT----SS 120
           CDICQVRRAFLFC EDRAILCRECDI IH  S+HTQKHSRFLLTGVKVSPSPAT    SS
Sbjct: 61  CDICQVRRAFLFCREDRAILCRECDISIHSISDHTQKHSRFLLTGVKVSPSPATSTSSSS 120

Query: 121 SSSTVSGGGSDESEEVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVGNFGGM 180
           SSS+VSGGG +      IE EIG+ K  S+K+AKM  + L R PL        VG    +
Sbjct: 121 SSSSVSGGGKE------IEGEIGLLKKCSKKRAKM--EELPRQPLN-------VGKL-EV 180

Query: 181 SENGVSFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV 216
            ENG SF+ S+ISEYLESLPGWCVEEFLDSSC AD+FCKV
Sbjct: 181 EENGESFTRSSISEYLESLPGWCVEEFLDSSCAADIFCKV 204

[Close]

BLAST of Carg25943-RA vs. ExPASy Swiss-Prot
Match: Q9LQZ7 (B-box zinc finger protein 21 OS=Arabidopsis thaliana OX=3702 GN=BBX21 PE=1 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 7.4e-46
Identity = 112/223 (50.22%), Postives = 134/223 (60.09%), Query Frame = 0


Query: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTANSPPSC 60
           MKIRCDVC+KEEASVFC +DEA+LC  CDH VH ANKLA KH RF+LL  + +  S P C
Sbjct: 1   MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60

Query: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTV 120
           DICQ ++A LFC +DRAILC++CD  IH A+EHT+KH RFLLTGVK+S   ATSS     
Sbjct: 61  DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLS---ATSSVYKPT 120

Query: 121 SGGGSDESEEVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVGN--------F 180
           S   S  S              S++  +  GS      PL + L AP   N         
Sbjct: 121 SKSSSSSS--------------SNQDFSVPGSSISNPPPLKKPLSAPPQSNKIQPFSKIN 180

Query: 181 GGMSENGVSFSTSNISEYL-ESLPGWCVEEFLDSSCVADVFCK 215
           GG +      STS ISEYL ++LPGW VE+FLDSS     F K
Sbjct: 181 GGDASVNQWGSTSTISEYLMDTLPGWHVEDFLDSSLPTYGFSK 206

[Close]

BLAST of Carg25943-RA vs. ExPASy Swiss-Prot
Match: Q0IGM7 (B-box zinc finger protein 20 OS=Arabidopsis thaliana OX=3702 GN=BBX20 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 6.3e-45
Identity = 114/221 (51.58%), Postives = 139/221 (62.90%), Query Frame = 0


Query: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTANSPPSC 60
           MKI C VC+KEEASVFC +DEAALC+ CD HVH ANKLA KH RF+L  ++PT    P C
Sbjct: 1   MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSL--TSPTFKDAPLC 60

Query: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSP-----ATSS 120
           DIC  RRA LFC EDRAILCRECDIPIH A+EHT+KH+RFLLTGVK+S SP     A++S
Sbjct: 61  DICGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPSAYPRASNS 120

Query: 121 SSSTVSGGGSDE----SEEVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVGN 180
           +S+   G         S EV   A   +F +SS         G             I  N
Sbjct: 121 NSAAAFGRAKTRPKSVSSEVPSSASNEVFTSSSSTTTSNCYYG-------------IEEN 180

Query: 181 FGGMSENGV-SFSTSNISEYL-ESLPGWCVEEFLD-SSCVA 210
           +  +S++G  S  T +ISEYL E+LPGW VE+ L+  SCV+
Sbjct: 181 YHHVSDSGSGSGCTGSISEYLMETLPGWRVEDLLEHPSCVS 206

[Close]

BLAST of Carg25943-RA vs. ExPASy Swiss-Prot
Match: Q9SYM2 (B-box zinc finger protein 22 OS=Arabidopsis thaliana OX=3702 GN=BBX22 PE=1 SV=2)

HSP 1 Score: 129.4 bits (324), Expect = 4.8e-29
Identity = 65/130 (50.00%), Postives = 83/130 (63.85%), Query Frame = 0


Query: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTANSPPSC 60
           MKI+C+VC   EA+V C +DEAALC ACD  +H ANKLA KH R  L   + +A+S P C
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPL---SASASSIPKC 60

Query: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTV 120
           DICQ    F FCL+DRA+LCR+CD+ IH  + H   H RFLLTG+KV      +  S+  
Sbjct: 61  DICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLESIDTGPSTKS 120

Query: 121 SGGGSDESEE 131
           S    D++ E
Sbjct: 121 SPTNDDKTME 127

[Close]

BLAST of Carg25943-RA vs. ExPASy Swiss-Prot
Match: Q96288 (B-box zinc finger protein 24 OS=Arabidopsis thaliana OX=3702 GN=BBX24 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.1e-28
Identity = 59/108 (54.63%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTANSPPSC 60
           MKI+CDVC K  A+V C +DEAALC  CD  +H ANKLA KH R   L     +   P C
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQR---LHLNSLSTKFPRC 60

Query: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVS 109
           DICQ + AF+FC+EDRA+LCR+CD  IH A+  +  H RFL TG+KV+
Sbjct: 61  DICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVA 105

[Close]

BLAST of Carg25943-RA vs. ExPASy Swiss-Prot
Match: O82617 (B-box zinc finger protein 23 OS=Arabidopsis thaliana OX=3702 GN=BBX23 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.3e-28
Identity = 69/157 (43.95%), Postives = 93/157 (59.24%), Query Frame = 0


Query: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLR---STPTANSP 60
           MKI+C+VC K EA V C SDEA LC  CD  VH ANKL ++H R  L +   S  TA+  
Sbjct: 1   MKIQCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEANKLFQRHHRVALQKDAASATTASGA 60

Query: 61  PSCDICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSS 120
           P CDICQ R+ + FCLEDRA+LC +CD  IH  +     H RFLL+GV+VS    T +S 
Sbjct: 61  PLCDICQERKGYFFCLEDRAMLCNDCDEAIHTCN----SHQRFLLSGVQVSDQSLTENSE 120

Query: 121 STVSGGGSDESEEVTIEAEIGIFKASSRKKAKMGSKG 155
            +     S  SE   I++++ +    S ++ + G+ G
Sbjct: 121 CST----SFSSETYQIQSKVSLNSQYSSEETEAGNSG 149

[Close]

BLAST of Carg25943-RA vs. ExPASy TrEMBL
Match: A0A6J1FTW5 (B-box zinc finger protein 20-like OS=Cucurbita moschata OX=3662 GN=LOC111448752 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 4.9e-117
Identity = 213/215 (99.07%), Postives = 213/215 (99.07%), Query Frame = 0


Query: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTANSPPSC 60
           MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPT NSPPSC
Sbjct: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTGNSPPSC 60

Query: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTV 120
           DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTV
Sbjct: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTV 120

Query: 121 SGGGSDESEEVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGV 180
           SGGGSDES EVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGV
Sbjct: 121 SGGGSDESAEVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGV 180

Query: 181 SFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV 216
           SFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV
Sbjct: 181 SFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV 215

[Close]

BLAST of Carg25943-RA vs. ExPASy TrEMBL
Match: A0A6J1J816 (B-box zinc finger protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111484297 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.6e-112
Identity = 207/215 (96.28%), Postives = 210/215 (97.67%), Query Frame = 0


Query: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTANSPPSC 60
           MKI CDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTL RSTPTANSPPSC
Sbjct: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTANSPPSC 60

Query: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTV 120
           DICQVRRAFLF LEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSS++
Sbjct: 61  DICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSSI 120

Query: 121 SGGGSDESEEVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGV 180
           SGGG DESEEVTIEAEIGIFKA SRK+AKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGV
Sbjct: 121 SGGG-DESEEVTIEAEIGIFKARSRKEAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGV 180

Query: 181 SFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV 216
           SFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV
Sbjct: 181 SFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV 214

[Close]

BLAST of Carg25943-RA vs. ExPASy TrEMBL
Match: A0A6J1CZ53 (B-box zinc finger protein 20-like OS=Momordica charantia OX=3673 GN=LOC111015522 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 4.3e-65
Identity = 136/209 (65.07%), Postives = 157/209 (75.12%), Query Frame = 0


Query: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTANSPPSC 60
           MKIRCDVC+ EEASVFCPSDEAALC+ACD  VHRANKLA KHSRF+L+     A  PP C
Sbjct: 1   MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLIPFADAAELPPPC 60

Query: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTV 120
           DICQ+RRA LFC EDRAILC ECDIPIH A+EHT+ H RFLLTGVK+ P+ A+S+ +  V
Sbjct: 61  DICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRNHGRFLLTGVKILPATASSTGAGRV 120

Query: 121 SGGGSDESEEVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVGNF----GGMS 180
            G          I+AE   F  +SRK+AK+GS GLLR PLME+ Q P +GN      G+S
Sbjct: 121 EG--------AAIDAEKIGFSRASRKRAKIGSNGLLRDPLMEEFQ-PSIGNLEFEESGIS 180

Query: 181 ENGVSFSTSNISEYLESLPGWCVEEFLDS 206
           + GVSFS S+ISEYLESLPGWCVEEFLDS
Sbjct: 181 D-GVSFSKSSISEYLESLPGWCVEEFLDS 199

[Close]

BLAST of Carg25943-RA vs. ExPASy TrEMBL
Match: A0A5A7TQI3 (B-box zinc finger protein 21-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00410 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 5.5e-60
Identity = 132/209 (63.16%), Postives = 146/209 (69.86%), Query Frame = 0


Query: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRS--TPTANSPP 60
           MKIRCDVC+KEEASVFCPSDEAALC ACD  VHRANKLA KHSRF+LL S  +  A S P
Sbjct: 1   MKIRCDVCDKEEASVFCPSDEAALCPACDRQVHRANKLASKHSRFSLLHSAASAAATSQP 60

Query: 61  SCDICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSS 120
            CD+CQ++RAFLFC EDRAILCRECDIPIH  SEHTQKHSRFLLTGVKVSPS ATSSS S
Sbjct: 61  LCDVCQIQRAFLFCREDRAILCRECDIPIHDTSEHTQKHSRFLLTGVKVSPSTATSSSCS 120

Query: 121 TVSGGGSDESEEVTIEAEIGIFKASSRKKAKMG-SKGLLRGPLMEDLQAPIVGNFGGMSE 180
           +  G G +E+E        G+ K  SRK++KMG SKGL+                     
Sbjct: 121 SSVGSGGEENE--------GLLKKCSRKRSKMGFSKGLV--------------------- 171

Query: 181 NGVSFSTSNISEYLESLPGWCVEEFLDSS 207
                    ISEYLESLPGWCVE+FLDSS
Sbjct: 181 ---------ISEYLESLPGWCVEDFLDSS 171

[Close]

BLAST of Carg25943-RA vs. ExPASy TrEMBL
Match: A0A1S3CDR2 (B-box zinc finger protein 21-like OS=Cucumis melo OX=3656 GN=LOC103499713 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 5.5e-60
Identity = 132/209 (63.16%), Postives = 146/209 (69.86%), Query Frame = 0


Query: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRS--TPTANSPP 60
           MKIRCDVC+KEEASVFCPSDEAALC ACD  VHRANKLA KHSRF+LL S  +  A S P
Sbjct: 1   MKIRCDVCDKEEASVFCPSDEAALCPACDRQVHRANKLASKHSRFSLLHSAASAAATSQP 60

Query: 61  SCDICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSS 120
            CD+CQ++RAFLFC EDRAILCRECDIPIH  SEHTQKHSRFLLTGVKVSPS ATSSS S
Sbjct: 61  LCDVCQIQRAFLFCREDRAILCRECDIPIHDTSEHTQKHSRFLLTGVKVSPSTATSSSCS 120

Query: 121 TVSGGGSDESEEVTIEAEIGIFKASSRKKAKMG-SKGLLRGPLMEDLQAPIVGNFGGMSE 180
           +  G G +E+E        G+ K  SRK++KMG SKGL+                     
Sbjct: 121 SSVGSGGEENE--------GLLKKCSRKRSKMGFSKGLV--------------------- 171

Query: 181 NGVSFSTSNISEYLESLPGWCVEEFLDSS 207
                    ISEYLESLPGWCVE+FLDSS
Sbjct: 181 ---------ISEYLESLPGWCVEDFLDSS 171

[Close]

BLAST of Carg25943-RA vs. TAIR 10
Match: AT1G75540.1 (salt tolerance homolog2 )

HSP 1 Score: 185.3 bits (469), Expect = 5.3e-47
Identity = 112/223 (50.22%), Postives = 134/223 (60.09%), Query Frame = 0


Query: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTANSPPSC 60
           MKIRCDVC+KEEASVFC +DEA+LC  CDH VH ANKLA KH RF+LL  + +  S P C
Sbjct: 1   MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60

Query: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTV 120
           DICQ ++A LFC +DRAILC++CD  IH A+EHT+KH RFLLTGVK+S   ATSS     
Sbjct: 61  DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLS---ATSSVYKPT 120

Query: 121 SGGGSDESEEVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVGN--------F 180
           S   S  S              S++  +  GS      PL + L AP   N         
Sbjct: 121 SKSSSSSS--------------SNQDFSVPGSSISNPPPLKKPLSAPPQSNKIQPFSKIN 180

Query: 181 GGMSENGVSFSTSNISEYL-ESLPGWCVEEFLDSSCVADVFCK 215
           GG +      STS ISEYL ++LPGW VE+FLDSS     F K
Sbjct: 181 GGDASVNQWGSTSTISEYLMDTLPGWHVEDFLDSSLPTYGFSK 206

[Close]

BLAST of Carg25943-RA vs. TAIR 10
Match: AT4G39070.1 (B-box zinc finger family protein )

HSP 1 Score: 182.2 bits (461), Expect = 4.5e-46
Identity = 114/221 (51.58%), Postives = 139/221 (62.90%), Query Frame = 0


Query: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTANSPPSC 60
           MKI C VC+KEEASVFC +DEAALC+ CD HVH ANKLA KH RF+L  ++PT    P C
Sbjct: 1   MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSL--TSPTFKDAPLC 60

Query: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSP-----ATSS 120
           DIC  RRA LFC EDRAILCRECDIPIH A+EHT+KH+RFLLTGVK+S SP     A++S
Sbjct: 61  DICGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPSAYPRASNS 120

Query: 121 SSSTVSGGGSDE----SEEVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVGN 180
           +S+   G         S EV   A   +F +SS         G             I  N
Sbjct: 121 NSAAAFGRAKTRPKSVSSEVPSSASNEVFTSSSSTTTSNCYYG-------------IEEN 180

Query: 181 FGGMSENGV-SFSTSNISEYL-ESLPGWCVEEFLD-SSCVA 210
           +  +S++G  S  T +ISEYL E+LPGW VE+ L+  SCV+
Sbjct: 181 YHHVSDSGSGSGCTGSISEYLMETLPGWRVEDLLEHPSCVS 206

[Close]

BLAST of Carg25943-RA vs. TAIR 10
Match: AT1G78600.1 (light-regulated zinc finger protein 1 )

HSP 1 Score: 129.4 bits (324), Expect = 3.4e-30
Identity = 65/130 (50.00%), Postives = 83/130 (63.85%), Query Frame = 0


Query: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTANSPPSC 60
           MKI+C+VC   EA+V C +DEAALC ACD  +H ANKLA KH R  L   + +A+S P C
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPL---SASASSIPKC 60

Query: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTV 120
           DICQ    F FCL+DRA+LCR+CD+ IH  + H   H RFLLTG+KV      +  S+  
Sbjct: 61  DICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLESIDTGPSTKS 120

Query: 121 SGGGSDESEE 131
           S    D++ E
Sbjct: 121 SPTNDDKTME 127

[Close]

BLAST of Carg25943-RA vs. TAIR 10
Match: AT1G78600.2 (light-regulated zinc finger protein 1 )

HSP 1 Score: 129.4 bits (324), Expect = 3.4e-30
Identity = 65/130 (50.00%), Postives = 83/130 (63.85%), Query Frame = 0


Query: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTANSPPSC 60
           MKI+C+VC   EA+V C +DEAALC ACD  +H ANKLA KH R  L   + +A+S P C
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPL---SASASSIPKC 60

Query: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTV 120
           DICQ    F FCL+DRA+LCR+CD+ IH  + H   H RFLLTG+KV      +  S+  
Sbjct: 61  DICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLESIDTGPSTKS 120

Query: 121 SGGGSDESEE 131
           S    D++ E
Sbjct: 121 SPTNDDKTME 127

[Close]

BLAST of Carg25943-RA vs. TAIR 10
Match: AT1G06040.2 (B-box zinc finger family protein )

HSP 1 Score: 126.7 bits (317), Expect = 2.2e-29
Identity = 59/108 (54.63%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTANSPPSC 60
           MKI+CDVC K  A+V C +DEAALC  CD  +H ANKLA KH R   L     +   P C
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQR---LHLNSLSTKFPRC 60

Query: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVS 109
           DICQ + AF+FC+EDRA+LCR+CD  IH A+  +  H RFL TG+KV+
Sbjct: 61  DICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVA 105

The following BLAST results are available for this feature:

BLAST of Carg25943-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571083.1	7.0e-118	100.00	B-box zinc finger protein 21, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_022944246.1	1.0e-116	99.07	B-box zinc finger protein 20-like [Cucurbita moschata]	[more]
XP_022986607.1	3.4e-112	96.28	B-box zinc finger protein 20-like [Cucurbita maxima]	[more]
XP_023513248.1	9.2e-110	93.49	B-box zinc finger protein 20-like [Cucurbita pepo subsp. pepo]	[more]
XP_038902472.1	5.3e-73	70.91	B-box zinc finger protein 21-like [Benincasa hispida]	[more]

BLAST of Carg25943-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQZ7	7.4e-46	50.22	B-box zinc finger protein 21 OS=Arabidopsis thaliana OX=3702 GN=BBX21 PE=1 SV=1	[more]
Q0IGM7	6.3e-45	51.58	B-box zinc finger protein 20 OS=Arabidopsis thaliana OX=3702 GN=BBX20 PE=1 SV=1	[more]
Q9SYM2	4.8e-29	50.00	B-box zinc finger protein 22 OS=Arabidopsis thaliana OX=3702 GN=BBX22 PE=1 SV=2	[more]
Q96288	3.1e-28	54.63	B-box zinc finger protein 24 OS=Arabidopsis thaliana OX=3702 GN=BBX24 PE=1 SV=1	[more]
O82617	5.3e-28	43.95	B-box zinc finger protein 23 OS=Arabidopsis thaliana OX=3702 GN=BBX23 PE=1 SV=1	[more]

BLAST of Carg25943-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FTW5	4.9e-117	99.07	B-box zinc finger protein 20-like OS=Cucurbita moschata OX=3662 GN=LOC111448752 ...	[more]
A0A6J1J816	1.6e-112	96.28	B-box zinc finger protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111484297 PE...	[more]
A0A6J1CZ53	4.3e-65	65.07	B-box zinc finger protein 20-like OS=Momordica charantia OX=3673 GN=LOC111015522...	[more]
A0A5A7TQI3	5.5e-60	63.16	B-box zinc finger protein 21-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3CDR2	5.5e-60	63.16	B-box zinc finger protein 21-like OS=Cucumis melo OX=3656 GN=LOC103499713 PE=4 S...	[more]

BLAST of Carg25943-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75540.1	5.3e-47	50.22	salt tolerance homolog2	[more]
AT4G39070.1	4.5e-46	51.58	B-box zinc finger family protein	[more]
AT1G78600.1	3.4e-30	50.00	light-regulated zinc finger protein 1	[more]
AT1G78600.2	3.4e-30	50.00	light-regulated zinc finger protein 1	[more]
AT1G06040.2	2.2e-29	54.63	B-box zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000315	B-box-type zinc finger	SMART	SM00336	bboxneu5	coord: 55..102 e-value: 2.0E-12 score: 57.3 coord: 4..47 e-value: 6.3E-6 score: 35.7
IPR000315	B-box-type zinc finger	PFAM	PF00643	zf-B_box	coord: 57..94 e-value: 5.4E-6 score: 26.5 coord: 3..43 e-value: 5.8E-6 score: 26.4
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 1..47 score: 10.665403
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 55..102 score: 9.242964
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 1..102 e-value: 2.6E-9 score: 39.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..127
None	No IPR available	PANTHER	PTHR31832:SF52	B-BOX ZINC FINGER PROTEIN 20	coord: 1..214
None	No IPR available	PANTHER	PTHR31832	B-BOX ZINC FINGER PROTEIN 22	coord: 1..214
None	No IPR available	CDD	cd19821	Bbox1_BBX-like	coord: 60..102 e-value: 1.41282E-13 score: 60.7743
None	No IPR available	CDD	cd19821	Bbox1_BBX-like	coord: 5..47 e-value: 1.71746E-14 score: 63.0855

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg25943	Carg25943	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25943-RA:1	Carg25943-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25943-RA:cds	Carg25943-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg25943-RA	Carg25943-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding