Carg25422-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25422-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein PATRONUS 1-like
Location	Carg_Chr11: 4351189 .. 4352874 (+)
Sequence length	639
RNA-Seq Expression	Carg25422-RA
Synteny	Carg25422-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGATTATTAAACTGCACAATCACCATCCAAGCCACTATTCATCGAAGAGAATATAATAACAAGAATGACAAGTCGTGTTACTCCAGGACGGCTGATTATCCCAAATGAAAACTTGGGCATGACTCAAAAGAGTAAGTCATCATCATTGCATGATAGCCATTAGTTTTGGCTAAAATCTGTTTGGCCAATGAGCATCGTCAAGCTGCCAGTGGAGATCTAGTGTGAAAAAATTCTGAAAACCATGGCTTGAAGTTTCATGTTCATGTATTTCTCATATAACATAGAACATCATTTAGCAGTTCATCTTGTAGTATTCTCTATTATGTTCTTTGTTAATTTCTTACATTTTCTACAGAATTTTCTGCTGATGGAAATGGAAGAAGCTCAAAGATAATTCACAAGAAAGGGTTAGCAGGGTCAGGGCGTAAAGCTCTAAATGACATTACAAACAAATCAACCTGTCGCCAGGACGCTCCATTGAGGAAGCAAGAAAGAGCAAAGGAAGAAATTGATGTAGGTGGTGAAAGATTTTTGCATGATCATGATAAATGCGTTGATGCACGAAAAGCCACTATGTCTGCCTTTTACTTGGATCTTCTTCTTCCTGGACATGGTAAGCTGTTGAATGTCGAGGATAAAATTGCTTTCAATTTGATAATAACTAAGTCTGCTAACGATTACTGCTTTTGTGAAATCTTCTGTGATTACTTTTATTACTATGTTCATTAAGAAAGTCCTGAATGGTAAATCTCCAGTCATTTATCATTTTACCGTCATCTTTACATGAGATTTAAAGCCCATATTTTCATATGCAGACTCATTGTCCAAAGTTGGATGTCATACGTCCGATCAAGCAAAGGTAATTCTTCTTAAACTACTTTCAATTTATTATTCTCTACTTATTTTTTTTATTCTTTGTCCTGTTGTTACCATAAAAAATGACATACGTATTCATCACTATATTTTGACTCAATACCTATAGGAGGAAATTGTAAAATTCAAACGTGTTTTAGTCATAAATTCCAAGTTACTTAGAATACTAATGTGTTGGGATTTTCTTGAATCTAAATACTATGGTTTGAGGAGATGATCTAAGGTAGATGTGTGTAGGCTGAGAGAATTCATGGGTTATATAAAGACAATGATATCGATCAATTGATATAATATGATTTTTCTTGATGTGTTTCTTCTCTTCCTTTTAATTAAACATATACTTTTTTCTTGAGAAAAGTGTCTTAAACTCAAGAATATTCTCCTATTTTCACTCATTAAGAATGAAAGTATTGCCATTAGCTGGGAATATGAGAAGTTTTTAATTTTGATAAAATTGATAATACACAAATGAGTAGAAACTTGAAGTATATTTCTAGTCACTATGTTTCAATCTTTATGTCAATTTGTCCTTATACTTCAAAAAGTTTTGTTACTGTCCTCTTAATAATGTTTTTAATCCTGAGTCGTGAATCTCTTTATGCTATAGATTGATGTTGATGCCCCACAATGTTACCCTGACCCGGATGAATTGTTCATTCCTGAGCTTCCTAATTGGTCAAAATATCTGGCCAAACAACAATCACCCCCACGCTCCCCATTGCGTTGGGATTTTCCATCAGCTTCATTTTCTTGCCAATTTGAGGAACTCAACTTTGTGCTTACGCATGAATGATGAAACTATGAGAGTTCAT

mRNA sequence

CAGATTATTAAACTGCACAATCACCATCCAAGCCACTATTCATCGAAGAGAATATAATAACAAGAATGACAAGTCGTGTTACTCCAGGACGGCTGATTATCCCAAATGAAAACTTGGGCATGACTCAAAAGAAATTTTCTGCTGATGGAAATGGAAGAAGCTCAAAGATAATTCACAAGAAAGGGTTAGCAGGGTCAGGGCGTAAAGCTCTAAATGACATTACAAACAAATCAACCTGTCGCCAGGACGCTCCATTGAGGAAGCAAGAAAGAGCAAAGGAAGAAATTGATGTAGGTGGTGAAAGATTTTTGCATGATCATGATAAATGCGTTGATGCACGAAAAGCCACTATGTCTGCCTTTTACTTGGATCTTCTTCTTCCTGGACATGACTCATTGTCCAAAGTTGGATGTCATACGTCCGATCAAGCAAAGATTGATGTTGATGCCCCACAATGTTACCCTGACCCGGATGAATTGTTCATTCCTGAGCTTCCTAATTGGTCAAAATATCTGGCCAAACAACAATCACCCCCACGCTCCCCATTGCGTTGGGATTTTCCATCAGCTTCATTTTCTTGCCAATTTGAGGAACTCAACTTTGTGCTTACGCATGAATGATGAAACTATGAGAGTTCAT

Coding sequence (CDS)

ATGACAAGTCGTGTTACTCCAGGACGGCTGATTATCCCAAATGAAAACTTGGGCATGACTCAAAAGAAATTTTCTGCTGATGGAAATGGAAGAAGCTCAAAGATAATTCACAAGAAAGGGTTAGCAGGGTCAGGGCGTAAAGCTCTAAATGACATTACAAACAAATCAACCTGTCGCCAGGACGCTCCATTGAGGAAGCAAGAAAGAGCAAAGGAAGAAATTGATGTAGGTGGTGAAAGATTTTTGCATGATCATGATAAATGCGTTGATGCACGAAAAGCCACTATGTCTGCCTTTTACTTGGATCTTCTTCTTCCTGGACATGACTCATTGTCCAAAGTTGGATGTCATACGTCCGATCAAGCAAAGATTGATGTTGATGCCCCACAATGTTACCCTGACCCGGATGAATTGTTCATTCCTGAGCTTCCTAATTGGTCAAAATATCTGGCCAAACAACAATCACCCCCACGCTCCCCATTGCGTTGGGATTTTCCATCAGCTTCATTTTCTTGCCAATTTGAGGAACTCAACTTTGTGCTTACGCATGAATGA

Protein sequence

MTSRVTPGRLIIPNENLGMTQKKFSADGNGRSSKIIHKKGLAGSGRKALNDITNKSTCRQDAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLLLPGHDSLSKVGCHTSDQAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPSASFSCQFEELNFVLTHE

Homology

[Close]

BLAST of Carg25422-RA vs. NCBI nr
Match: KAG7022111.1 (Protein PATRONUS 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 383.6 bits (984), Expect = 9.3e-103
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MTSRVTPGRLIIPNENLGMTQKKFSADGNGRSSKIIHKKGLAGSGRKALNDITNKSTCRQ 60
           MTSRVTPGRLIIPNENLGMTQKKFSADGNGRSSKIIHKKGLAGSGRKALNDITNKSTCRQ
Sbjct: 1   MTSRVTPGRLIIPNENLGMTQKKFSADGNGRSSKIIHKKGLAGSGRKALNDITNKSTCRQ 60

Query: 61  DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLLLPGHDSLSKVGCHTSD 120
           DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLLLPGHDSLSKVGCHTSD
Sbjct: 61  DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLLLPGHDSLSKVGCHTSD 120

Query: 121 QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPSASFSCQFEELNFV 180
           QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPSASFSCQFEELNFV
Sbjct: 121 QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPSASFSCQFEELNFV 180

Query: 181 LTHE 185
           LTHE
Sbjct: 181 LTHE 184

[Close]

BLAST of Carg25422-RA vs. NCBI nr
Match: KAG6588212.1 (Protein PATRONUS 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 382.5 bits (981), Expect = 2.1e-102
Identity = 183/184 (99.46%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MTSRVTPGRLIIPNENLGMTQKKFSADGNGRSSKIIHKKGLAGSGRKALNDITNKSTCRQ 60
           MTSRVTPGRLIIPNENLGMTQKKFSADGNGRSSKIIHKKGLAGSGRKALNDITNKSTCRQ
Sbjct: 1   MTSRVTPGRLIIPNENLGMTQKKFSADGNGRSSKIIHKKGLAGSGRKALNDITNKSTCRQ 60

Query: 61  DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLLLPGHDSLSKVGCHTSD 120
           DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDL+LPGHDSLSKVGCHTSD
Sbjct: 61  DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLVLPGHDSLSKVGCHTSD 120

Query: 121 QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPSASFSCQFEELNFV 180
           QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPSASFSCQFEELNFV
Sbjct: 121 QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPSASFSCQFEELNFV 180

Query: 181 LTHE 185
           LTHE
Sbjct: 181 LTHE 184

[Close]

BLAST of Carg25422-RA vs. NCBI nr
Match: XP_022928585.1 (protein PATRONUS 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 378.6 bits (971), Expect = 3.0e-101
Identity = 180/184 (97.83%), Postives = 183/184 (99.46%), Query Frame = 0


Query: 1   MTSRVTPGRLIIPNENLGMTQKKFSADGNGRSSKIIHKKGLAGSGRKALNDITNKSTCRQ 60
           MTSRVTPGRLIIPNENLGMTQKKFSADGNG+SSKIIHKKG+AGSGRKALNDITNKS+CRQ
Sbjct: 48  MTSRVTPGRLIIPNENLGMTQKKFSADGNGKSSKIIHKKGIAGSGRKALNDITNKSSCRQ 107

Query: 61  DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLLLPGHDSLSKVGCHTSD 120
           DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLLLPGHDSLSKVGCHTSD
Sbjct: 108 DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLLLPGHDSLSKVGCHTSD 167

Query: 121 QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPSASFSCQFEELNFV 180
           QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPS SFSCQFEELNFV
Sbjct: 168 QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPSTSFSCQFEELNFV 227

Query: 181 LTHE 185
           LTHE
Sbjct: 228 LTHE 231

[Close]

BLAST of Carg25422-RA vs. NCBI nr
Match: XP_022928586.1 (protein PATRONUS 1-like isoform X2 [Cucurbita moschata] >XP_022928587.1 protein PATRONUS 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 378.6 bits (971), Expect = 3.0e-101
Identity = 180/184 (97.83%), Postives = 183/184 (99.46%), Query Frame = 0


Query: 1   MTSRVTPGRLIIPNENLGMTQKKFSADGNGRSSKIIHKKGLAGSGRKALNDITNKSTCRQ 60
           MTSRVTPGRLIIPNENLGMTQKKFSADGNG+SSKIIHKKG+AGSGRKALNDITNKS+CRQ
Sbjct: 1   MTSRVTPGRLIIPNENLGMTQKKFSADGNGKSSKIIHKKGIAGSGRKALNDITNKSSCRQ 60

Query: 61  DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLLLPGHDSLSKVGCHTSD 120
           DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLLLPGHDSLSKVGCHTSD
Sbjct: 61  DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLLLPGHDSLSKVGCHTSD 120

Query: 121 QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPSASFSCQFEELNFV 180
           QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPS SFSCQFEELNFV
Sbjct: 121 QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPSTSFSCQFEELNFV 180

Query: 181 LTHE 185
           LTHE
Sbjct: 181 LTHE 184

[Close]

BLAST of Carg25422-RA vs. NCBI nr
Match: XP_022973829.1 (protein PATRONUS 1-like [Cucurbita maxima] >XP_022973838.1 protein PATRONUS 1-like [Cucurbita maxima])

HSP 1 Score: 376.3 bits (965), Expect = 1.5e-100
Identity = 179/184 (97.28%), Postives = 182/184 (98.91%), Query Frame = 0


Query: 1   MTSRVTPGRLIIPNENLGMTQKKFSADGNGRSSKIIHKKGLAGSGRKALNDITNKSTCRQ 60
           MTSRVTPGRLIIPNENLGMTQKKFSADGNG+SSKIIHKKG+AGSGRKALNDITNKSTCRQ
Sbjct: 1   MTSRVTPGRLIIPNENLGMTQKKFSADGNGKSSKIIHKKGIAGSGRKALNDITNKSTCRQ 60

Query: 61  DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLLLPGHDSLSKVGCHTSD 120
           DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDL+LPGHDSLSKVGCHTSD
Sbjct: 61  DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLVLPGHDSLSKVGCHTSD 120

Query: 121 QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPSASFSCQFEELNFV 180
           QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPS SFSCQF ELNFV
Sbjct: 121 QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPSTSFSCQFGELNFV 180

Query: 181 LTHE 185
           LTHE
Sbjct: 181 LTHE 184

[Close]

BLAST of Carg25422-RA vs. ExPASy Swiss-Prot
Match: Q9LJG6 (Protein PATRONUS 1 OS=Arabidopsis thaliana OX=3702 GN=PANS1 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-17
Identity = 59/176 (33.52%), Postives = 85/176 (48.30%), Query Frame = 0


Query: 9   RLIIPNENLGMTQKKFSADGNGRSSKIIHKKGLAGSGRKALNDITNKSTCRQDAPLRKQE 68
           ++I P+EN  + +KK     + +S   +  +   G  RKALNDITNKS     A    + 
Sbjct: 9   QMIFPDENAPIHRKKSVTAASVKSKGTVLGQKKPGGARKALNDITNKSGIHAKAAASSKN 68

Query: 69  R-----AKEEIDVGGERFLHDHDKCVDARKATMSAFY-LDLLLPGHDSLSKVGCHTSDQA 128
           +     A +EID+ GERFLHDH KC+  ++      Y  DL+L  H S  K      D  
Sbjct: 69  KQIASAAVKEIDIAGERFLHDHSKCIKEQQNLWDDHYSADLMLLHHGSSIKEKHLNWDIE 128

Query: 129 KIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSP-------PRSPLRWDFPSASFS 172
           K+D      Y +P+E+  P+  +W K     +SP       P +PL W F S  F+
Sbjct: 129 KMDAKDDLTYEEPEEMASPKFSDWLKNSTPWRSPIRHGSMMPSTPLAWRFDSCEFT 184

[Close]

BLAST of Carg25422-RA vs. ExPASy Swiss-Prot
Match: Q94CK6 (Protein PATRONUS 2 OS=Arabidopsis thaliana OX=3702 GN=PANS2 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-13
Identity = 59/192 (30.73%), Postives = 96/192 (50.00%), Query Frame = 0


Query: 1   MTSRVTPGRLIIPNEN-LGMTQKKFSADGNGRSSKIIHKKGLAGSG-RKALNDITNKSTC 60
           M + +  G++I  +EN L    KK  A G G+SS    KK  AG G RKAL+DITNKS  
Sbjct: 1   MANTILRGQMIFQDENALAALGKKAVAAGKGKSSLAAPKKNGAGFGSRKALHDITNKSKL 60

Query: 61  R-QDAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATM--SAFYLDLLLPGHDSLSKVG 120
           + Q +   +++    + D+  E FLHDH KC++ ++     S F   ++L GH++  K G
Sbjct: 61  QPQASSTTRKDVEGVDFDIAKEGFLHDHSKCIEEQQQDQWDSYFSEHIILHGHETNIKEG 120

Query: 121 CHTSDQAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSP-----------PRSPLRWD 177
               +  + ++DA   + +  E+ + E  +  +   + +SP           P SPL W 
Sbjct: 121 VPQYNNIQ-EIDAENSWDELKEIPMEEFSDLLECSTQWRSPPDSLSHHHSSLPSSPLPWH 180

[Close]

BLAST of Carg25422-RA vs. ExPASy TrEMBL
Match: A0A6J1EKC8 (protein PATRONUS 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435410 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.4e-101
Identity = 180/184 (97.83%), Postives = 183/184 (99.46%), Query Frame = 0


Query: 1   MTSRVTPGRLIIPNENLGMTQKKFSADGNGRSSKIIHKKGLAGSGRKALNDITNKSTCRQ 60
           MTSRVTPGRLIIPNENLGMTQKKFSADGNG+SSKIIHKKG+AGSGRKALNDITNKS+CRQ
Sbjct: 1   MTSRVTPGRLIIPNENLGMTQKKFSADGNGKSSKIIHKKGIAGSGRKALNDITNKSSCRQ 60

Query: 61  DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLLLPGHDSLSKVGCHTSD 120
           DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLLLPGHDSLSKVGCHTSD
Sbjct: 61  DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLLLPGHDSLSKVGCHTSD 120

Query: 121 QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPSASFSCQFEELNFV 180
           QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPS SFSCQFEELNFV
Sbjct: 121 QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPSTSFSCQFEELNFV 180

Query: 181 LTHE 185
           LTHE
Sbjct: 181 LTHE 184

[Close]

BLAST of Carg25422-RA vs. ExPASy TrEMBL
Match: A0A6J1ES26 (protein PATRONUS 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435410 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.4e-101
Identity = 180/184 (97.83%), Postives = 183/184 (99.46%), Query Frame = 0


Query: 1   MTSRVTPGRLIIPNENLGMTQKKFSADGNGRSSKIIHKKGLAGSGRKALNDITNKSTCRQ 60
           MTSRVTPGRLIIPNENLGMTQKKFSADGNG+SSKIIHKKG+AGSGRKALNDITNKS+CRQ
Sbjct: 48  MTSRVTPGRLIIPNENLGMTQKKFSADGNGKSSKIIHKKGIAGSGRKALNDITNKSSCRQ 107

Query: 61  DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLLLPGHDSLSKVGCHTSD 120
           DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLLLPGHDSLSKVGCHTSD
Sbjct: 108 DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLLLPGHDSLSKVGCHTSD 167

Query: 121 QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPSASFSCQFEELNFV 180
           QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPS SFSCQFEELNFV
Sbjct: 168 QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPSTSFSCQFEELNFV 227

Query: 181 LTHE 185
           LTHE
Sbjct: 228 LTHE 231

[Close]

BLAST of Carg25422-RA vs. ExPASy TrEMBL
Match: A0A6J1IFS7 (protein PATRONUS 1-like OS=Cucurbita maxima OX=3661 GN=LOC111472376 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 7.2e-101
Identity = 179/184 (97.28%), Postives = 182/184 (98.91%), Query Frame = 0


Query: 1   MTSRVTPGRLIIPNENLGMTQKKFSADGNGRSSKIIHKKGLAGSGRKALNDITNKSTCRQ 60
           MTSRVTPGRLIIPNENLGMTQKKFSADGNG+SSKIIHKKG+AGSGRKALNDITNKSTCRQ
Sbjct: 1   MTSRVTPGRLIIPNENLGMTQKKFSADGNGKSSKIIHKKGIAGSGRKALNDITNKSTCRQ 60

Query: 61  DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLLLPGHDSLSKVGCHTSD 120
           DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDL+LPGHDSLSKVGCHTSD
Sbjct: 61  DAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLVLPGHDSLSKVGCHTSD 120

Query: 121 QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPSASFSCQFEELNFV 180
           QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPS SFSCQF ELNFV
Sbjct: 121 QAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPSTSFSCQFGELNFV 180

Query: 181 LTHE 185
           LTHE
Sbjct: 181 LTHE 184

[Close]

BLAST of Carg25422-RA vs. ExPASy TrEMBL
Match: A0A6J1D5A5 (protein PATRONUS 1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111017434 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.2e-65
Identity = 129/186 (69.35%), Postives = 150/186 (80.65%), Query Frame = 0


Query: 1   MTSRVTPGRLIIPNENLGMTQKKFSADGNGRSSKIIHKKGL-AGSGRKALNDITNKST-C 60
           MTSRVTPG+LIIP+ENLGM  KK +AD  G+SSKIIHKKG+ AGSGRKALNDI+NKS+  
Sbjct: 1   MTSRVTPGQLIIPDENLGMNPKKIAADRKGKSSKIIHKKGVAAGSGRKALNDISNKSSIL 60

Query: 61  RQDAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLLLPGHDSLSKVGCHT 120
            Q+ P+RK+ERAKEEIDV GERFLHDHDKC++A++  + A YLDL+LPGHDSL KV  H 
Sbjct: 61  HQEVPIRKKERAKEEIDVAGERFLHDHDKCIEAQRLPVLASYLDLVLPGHDSLPKVESHA 120

Query: 121 SDQAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPSASFSCQFEELN 180
           SDQAKI++D P+CY DPDELF  E  +W KYLAKQ S P SP+ WD  SASFS QFEE N
Sbjct: 121 SDQAKINIDTPRCYSDPDELFTLECNSWEKYLAKQHSAPCSPMHWDSSSASFSWQFEEPN 180

Query: 181 FVLTHE 185
           FVL  E
Sbjct: 181 FVLRDE 186

[Close]

BLAST of Carg25422-RA vs. ExPASy TrEMBL
Match: A0A6J1D672 (protein PATRONUS 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017434 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 4.1e-64
Identity = 129/187 (68.98%), Postives = 151/187 (80.75%), Query Frame = 0


Query: 1   MTSRVTPGRLIIPNENLGMT-QKKFSADGNGRSSKIIHKKGL-AGSGRKALNDITNKST- 60
           MTSRVTPG+LIIP+ENLGM  +KK +AD  G+SSKIIHKKG+ AGSGRKALNDI+NKS+ 
Sbjct: 1   MTSRVTPGQLIIPDENLGMNPKKKVAADRKGKSSKIIHKKGVAAGSGRKALNDISNKSSI 60

Query: 61  CRQDAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATMSAFYLDLLLPGHDSLSKVGCH 120
             Q+ P+RK+ERAKEEIDV GERFLHDHDKC++A++  + A YLDL+LPGHDSL KV  H
Sbjct: 61  LHQEVPIRKKERAKEEIDVAGERFLHDHDKCIEAQRLPVLASYLDLVLPGHDSLPKVESH 120

Query: 121 TSDQAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSPPRSPLRWDFPSASFSCQFEEL 180
            SDQAKI++D P+CY DPDELF  E  +W KYLAKQ S P SP+ WD  SASFS QFEE 
Sbjct: 121 ASDQAKINIDTPRCYSDPDELFTLECNSWEKYLAKQHSAPCSPMHWDSSSASFSWQFEEP 180

Query: 181 NFVLTHE 185
           NFVL  E
Sbjct: 181 NFVLRDE 187

[Close]

BLAST of Carg25422-RA vs. TAIR 10
Match: AT3G14190.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12360.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 91.3 bits (225), Expect = 8.9e-19
Identity = 59/176 (33.52%), Postives = 85/176 (48.30%), Query Frame = 0


Query: 9   RLIIPNENLGMTQKKFSADGNGRSSKIIHKKGLAGSGRKALNDITNKSTCRQDAPLRKQE 68
           ++I P+EN  + +KK     + +S   +  +   G  RKALNDITNKS     A    + 
Sbjct: 9   QMIFPDENAPIHRKKSVTAASVKSKGTVLGQKKPGGARKALNDITNKSGIHAKAAASSKN 68

Query: 69  R-----AKEEIDVGGERFLHDHDKCVDARKATMSAFY-LDLLLPGHDSLSKVGCHTSDQA 128
           +     A +EID+ GERFLHDH KC+  ++      Y  DL+L  H S  K      D  
Sbjct: 69  KQIASAAVKEIDIAGERFLHDHSKCIKEQQNLWDDHYSADLMLLHHGSSIKEKHLNWDIE 128

Query: 129 KIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSP-------PRSPLRWDFPSASFS 172
           K+D      Y +P+E+  P+  +W K     +SP       P +PL W F S  F+
Sbjct: 129 KMDAKDDLTYEEPEEMASPKFSDWLKNSTPWRSPIRHGSMMPSTPLAWRFDSCEFT 184

[Close]

BLAST of Carg25422-RA vs. TAIR 10
Match: AT5G12360.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-14
Identity = 59/192 (30.73%), Postives = 96/192 (50.00%), Query Frame = 0


Query: 1   MTSRVTPGRLIIPNEN-LGMTQKKFSADGNGRSSKIIHKKGLAGSG-RKALNDITNKSTC 60
           M + +  G++I  +EN L    KK  A G G+SS    KK  AG G RKAL+DITNKS  
Sbjct: 1   MANTILRGQMIFQDENALAALGKKAVAAGKGKSSLAAPKKNGAGFGSRKALHDITNKSKL 60

Query: 61  R-QDAPLRKQERAKEEIDVGGERFLHDHDKCVDARKATM--SAFYLDLLLPGHDSLSKVG 120
           + Q +   +++    + D+  E FLHDH KC++ ++     S F   ++L GH++  K G
Sbjct: 61  QPQASSTTRKDVEGVDFDIAKEGFLHDHSKCIEEQQQDQWDSYFSEHIILHGHETNIKEG 120

Query: 121 CHTSDQAKIDVDAPQCYPDPDELFIPELPNWSKYLAKQQSP-----------PRSPLRWD 177
               +  + ++DA   + +  E+ + E  +  +   + +SP           P SPL W 
Sbjct: 121 VPQYNNIQ-EIDAENSWDELKEIPMEEFSDLLECSTQWRSPPDSLSHHHSSLPSSPLPWH 180

The following BLAST results are available for this feature:

BLAST of Carg25422-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022111.1	9.3e-103	100.00	Protein PATRONUS 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6588212.1	2.1e-102	99.46	Protein PATRONUS 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022928585.1	3.0e-101	97.83	protein PATRONUS 1-like isoform X1 [Cucurbita moschata]	[more]
XP_022928586.1	3.0e-101	97.83	protein PATRONUS 1-like isoform X2 [Cucurbita moschata] >XP_022928587.1 protein ...	[more]
XP_022973829.1	1.5e-100	97.28	protein PATRONUS 1-like [Cucurbita maxima] >XP_022973838.1 protein PATRONUS 1-li...	[more]

BLAST of Carg25422-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LJG6	1.2e-17	33.52	Protein PATRONUS 1 OS=Arabidopsis thaliana OX=3702 GN=PANS1 PE=1 SV=1	[more]
Q94CK6	1.4e-13	30.73	Protein PATRONUS 2 OS=Arabidopsis thaliana OX=3702 GN=PANS2 PE=2 SV=1	[more]

BLAST of Carg25422-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EKC8	1.4e-101	97.83	protein PATRONUS 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435410...	[more]
A0A6J1ES26	1.4e-101	97.83	protein PATRONUS 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435410...	[more]
A0A6J1IFS7	7.2e-101	97.28	protein PATRONUS 1-like OS=Cucurbita maxima OX=3661 GN=LOC111472376 PE=4 SV=1	[more]
A0A6J1D5A5	2.2e-65	69.35	protein PATRONUS 1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC11101743...	[more]
A0A6J1D672	4.1e-64	68.98	protein PATRONUS 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC11101743...	[more]

BLAST of Carg25422-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G14190.1	8.9e-19	33.52	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G12360.1	1.0e-14	30.73	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039326	Protein Patronus	PANTHER	PTHR35125	NEURON NAVIGATOR 1-LIKE-RELATED	coord: 1..183
None	No IPR available	PANTHER	PTHR35125:SF1	PROTEIN PATRONUS 2	coord: 1..183

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg25422	Carg25422	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25422-RA:1	Carg25422-RA:1	exon
Carg25422-RA:2	Carg25422-RA:2	exon
Carg25422-RA:3	Carg25422-RA:3	exon
Carg25422-RA:4	Carg25422-RA:4	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25422-RA:five_prime_utr	Carg25422-RA:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25422-RA:cds	Carg25422-RA:cds	CDS
Carg25422-RA:cds	Carg25422-RA:cds_2	CDS
Carg25422-RA:cds	Carg25422-RA:cds_3	CDS
Carg25422-RA:cds	Carg25422-RA:cds_4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25422-RA:three_prime_utr	Carg25422-RA:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg25422-RA	Carg25422-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007346	regulation of mitotic cell cycle