Carg24875-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24875-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr08: 2030581 .. 2030868 (-)
Sequence length	288
RNA-Seq Expression	Carg24875-RA
Synteny	Carg24875-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGCGACCGATACCGCCGCCTGTTTAGACCAAATCGACAGCGGCGACGGCGGCGGCGGCGATGATGATGAATCGTCAATGGCCGGCGATGGTTCACGCCATTTCACCGAACATCGAATCAATAGCTACTCTTCTCCGGCCGTGACTTTTCCAAAAGCGGCAAAATCAGTAGCAGAAGCGCCAAGCAAAGCACCTAATAACACTTGCTCAAATTTCTTACCATTCCCCAACCAGCTTCTGACGCTTGTAGAAGCCAGCCACGTAGCTCTCGATTATCGAACCTAG

mRNA sequence

ATGACGGCGACCGATACCGCCGCCTGTTTAGACCAAATCGACAGCGGCGACGGCGGCGGCGGCGATGATGATGAATCGTCAATGGCCGGCGATGGTTCACGCCATTTCACCGAACATCGAATCAATAGCTACTCTTCTCCGGCCGTGACTTTTCCAAAAGCGGCAAAATCAGTAGCAGAAGCGCCAAGCAAAGCACCTAATAACACTTGCTCAAATTTCTTACCATTCCCCAACCAGCTTCTGACGCTTGTAGAAGCCAGCCACGTAGCTCTCGATTATCGAACCTAG

Coding sequence (CDS)

ATGACGGCGACCGATACCGCCGCCTGTTTAGACCAAATCGACAGCGGCGACGGCGGCGGCGGCGATGATGATGAATCGTCAATGGCCGGCGATGGTTCACGCCATTTCACCGAACATCGAATCAATAGCTACTCTTCTCCGGCCGTGACTTTTCCAAAAGCGGCAAAATCAGTAGCAGAAGCGCCAAGCAAAGCACCTAATAACACTTGCTCAAATTTCTTACCATTCCCCAACCAGCTTCTGACGCTTGTAGAAGCCAGCCACGTAGCTCTCGATTATCGAACCTAG

Protein sequence

MTATDTAACLDQIDSGDGGGGDDDESSMAGDGSRHFTEHRINSYSSPAVTFPKAAKSVAEAPSKAPNNTCSNFLPFPNQLLTLVEASHVALDYRT

Homology

[Close]

BLAST of Carg24875-RA vs. NCBI nr
Match: KAG7025531.1 (hypothetical protein SDJN02_12027, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 189.1 bits (479), Expect = 1.7e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MTATDTAACLDQIDSGDGGGGDDDESSMAGDGSRHFTEHRINSYSSPAVTFPKAAKSVAE 60
          MTATDTAACLDQIDSGDGGGGDDDESSMAGDGSRHFTEHRINSYSSPAVTFPKAAKSVAE
Sbjct: 1  MTATDTAACLDQIDSGDGGGGDDDESSMAGDGSRHFTEHRINSYSSPAVTFPKAAKSVAE 60

Query: 61 APSKAPNNTCSNFLPFPNQLLTLVEASHVALDYRT 96
          APSKAPNNTCSNFLPFPNQLLTLVEASHVALDYRT
Sbjct: 61 APSKAPNNTCSNFLPFPNQLLTLVEASHVALDYRT 95

[Close]

BLAST of Carg24875-RA vs. NCBI nr
Match: KAG6593126.1 (hypothetical protein SDJN03_12602, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.0 bits (406), Expect = 5.1e-36
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  MTATDTAACLDQIDSGDGGGGDDDESSMAGDGSRHFTEHRINSYSSPAVTFPKAAKSVAE 60
          MTATDTAACLDQIDSGDGGGGDDDESSMAGDGSRHFTEHRINSYSSPAVTFPKAAKSVAE
Sbjct: 1  MTATDTAACLDQIDSGDGGGGDDDESSMAGDGSRHFTEHRINSYSSPAVTFPKAAKSVAE 60

Query: 61 APSKAPNNTCSNFLPFPNQLLTL 84
          APSKAPNNT SNFLPFPNQLLTL
Sbjct: 61 APSKAPNNTYSNFLPFPNQLLTL 83

The following BLAST results are available for this feature:

BLAST of Carg24875-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025531.1	1.7e-44	100.00	hypothetical protein SDJN02_12027, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6593126.1	5.1e-36	98.80	hypothetical protein SDJN03_12602, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg24875-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24875-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24875-RA vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg24875	Carg24875	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24875-RA:1	Carg24875-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24875-RA:cds	Carg24875-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg24875-RA	Carg24875-RA-protein	polypeptide