Carg24491-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24491-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 612367 .. 614233 (+)
Sequence length468
RNA-Seq ExpressionCarg24491-RA
SyntenyCarg24491-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCCTCCCTGTCTGTTGAATGGCCGGAAAGCGCTCGAGTACCGGTCCCGGAACCAAGCTCTAGGGTTTATCAGCGCAAGTTTCGATGGCTTCCTCGAGGCCACTTCTTTGCCATCGGAGCTGTCGTGGAGGTACCAGTTCAGGATTCCGGTGTTGCCATAGACGGACTGCTCGAATTTCCATGGCTTCAAGCTCGCCGTTACGGTCTCTCCGACTGCTAATTTGAGGCCTGGGTAAGGGTTTGAGGGTTCGAATCCGGCTTCTAGGGTTTTCTCGGTTCCGACTTCTATTATAGGGTTGTCTGATGATTTGCTTACTGAGACGCTCATTATGTTTGTTTGTAGAGTTGGAGTGAGCTGCAAGGAGATCCGTGATGGAAAATACTTCTCTGATCCGCCGACTCCTCGTTTTGACAAGAGCATGTCGTTCACGAGCGGGATGATGTTGCACCTGTAAGAATTCGAGGTACGTTTTGAACTCCAATGCCAAAGATACGTGAGAATCTTCACTATTAATTACTTATAGCAGCATGATAGATCAGTATCGGAATCGTTTTTTTTTTCTAGAATTTGCCTTTGTGTCTTAGTCCTTACTTTTAGTGCAATAGAGAAGAAGTTTAAACTCAATTGTGGAAGATGCGTGAGAATCCTTAACATCGATTACTTCTGATAGCTTGAAAGATCAGTTTGGAATCAATTTTGCAAGAATTTATCCTTCTTGTTCGTTACGTCTAGTGTGTGAGAGAGAAAAAATTCGTTCTTAGCAGCACAGAAGTTAGCTTCGAAGTTCAACATACCTTATGTTGTCAACGTGAACTCTCAGATTAATCCACTTTTCTCGAACCTCAGCCTTGTAATTGAACTGCAGAATCCCTTCTAGCTGGTGATAATTTAGAGAGAGTTGCAATCTTTCATCAGTCGAAGGATTGCGTGAGTTCTCAATGCAATCCATTGCAATGACAGGGCAATAGAGTTGAACTTTCCACAATCCATGTGTTGAAAATGAATAAGAGAACAAAGGTGAGGGTGTTTTGAGCATGCAGCTGTTGGCTTTGAGCTCGACTATCCAGTTGGTAATTGCAAGGTTTATGGATCTCATCCATTGCTCTTCTATATTAGACCCCAACAGTTTCATGAGCATCTTTGATGCCTGTCTTGACTGAAAATTGGTTAAATGATACTTGAGAGTTGTCAGACAATCCAAACGCAGAGCGGTCGGAGCTTCATAAATGCAAATGAGGAATAGAAGGTTAAGAAATGTAACATTGAAAATTTCTTTTGGGTTGAAAGTAATGTTGAGTTTGAGGAAACCAAAGCTAAAATTCTTTTGCTGGTCTGAGCCATAATGAAGAACATCGCGAATACAATTAAGCAAGAGACTGGATATGCTTTCTTGGTCATCTAATAAATTTGAGGATTTGGTGCTGGTCTTTAAGGGCTCTGAACTCCAAAGAGAGATAGGAAGGCTAAAATCTGCGATAACCGATAAAGTAATGGTTGCGGAATGAAGGCTTTTGGCTGCAACAACATTGAGGGAGGAGTTGCTTGAGCTTGAAGAGCATATGGATGTAGAAATGGAAGTTGTTTTCCATTGAGAAAGTGGTGGTAGGTTCTGTATCCAGGAATAAACATCGGGAAAGCTACAAGGAGCCATGCAGTAAGTTAGCAAGATTGAACTCCTTTTCTTCTCTGTAGGGGTAAAGGATGTTATTTTCTTCTATATTTATAGACTCTTTGATGAATGGAATTTTAGTAAAGCAAAGTTTCTAGAACGTGGAAAAGTCAACTGGAAAAGTGATCCATTGGCATCAAGAAAGAAGAGAGAAAAGGTAAAGAACACGATAAGATTGGATGGTTCTGCATAG

mRNA sequence

ATGACGCCTCCCTGTCTGTTGAATGGCCGGAAAGCGCTCGAGTACCGGTCCCGGAACCAAGCTCTAGGGTTTATCAGCGCAAGTTTCGATGGCTTCCTCGAGGCCACTTCTTTGCCATCGGAGCTGTCGTGGAGGTACCAGTTCAGGATTCCGACGGACTGCTCGAATTTCCATGGCTTCAAGCTCGCCGTTACGGTCTCTCCGACTGCTAATTTGAGGCCTGGAGTTGGAGTGAGCTGCAAGGAGATCCGTGATGGAAAATACTTCTCTGATCCGCCGACTCCTCGTTTTGACAAGAGCATGTCGTTCACGAGCGGGATGATGTTGCACCTACTCTTTGATGAATGGAATTTTAGTAAAGCAAAGTTTCTAGAACGTGGAAAAGTCAACTGGAAAAGTGATCCATTGGCATCAAGAAAGAAGAGAGAAAAGGTAAAGAACACGATAAGATTGGATGGTTCTGCATAG

Coding sequence (CDS)

ATGACGCCTCCCTGTCTGTTGAATGGCCGGAAAGCGCTCGAGTACCGGTCCCGGAACCAAGCTCTAGGGTTTATCAGCGCAAGTTTCGATGGCTTCCTCGAGGCCACTTCTTTGCCATCGGAGCTGTCGTGGAGGTACCAGTTCAGGATTCCGACGGACTGCTCGAATTTCCATGGCTTCAAGCTCGCCGTTACGGTCTCTCCGACTGCTAATTTGAGGCCTGGAGTTGGAGTGAGCTGCAAGGAGATCCGTGATGGAAAATACTTCTCTGATCCGCCGACTCCTCGTTTTGACAAGAGCATGTCGTTCACGAGCGGGATGATGTTGCACCTACTCTTTGATGAATGGAATTTTAGTAAAGCAAAGTTTCTAGAACGTGGAAAAGTCAACTGGAAAAGTGATCCATTGGCATCAAGAAAGAAGAGAGAAAAGGTAAAGAACACGATAAGATTGGATGGTTCTGCATAG

Protein sequence

MTPPCLLNGRKALEYRSRNQALGFISASFDGFLEATSLPSELSWRYQFRIPTDCSNFHGFKLAVTVSPTANLRPGVGVSCKEIRDGKYFSDPPTPRFDKSMSFTSGMMLHLLFDEWNFSKAKFLERGKVNWKSDPLASRKKREKVKNTIRLDGSA
Homology
[Close]
BLAST of Carg24491-RA vs. NCBI nr
Match: KAG7030640.1 (hypothetical protein SDJN02_04677, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 323.6 bits (828), Expect = 9.6e-85
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MTPPCLLNGRKALEYRSRNQALGFISASFDGFLEATSLPSELSWRYQFRIPTDCSNFHGF 60
           MTPPCLLNGRKALEYRSRNQALGFISASFDGFLEATSLPSELSWRYQFRIPTDCSNFHGF
Sbjct: 1   MTPPCLLNGRKALEYRSRNQALGFISASFDGFLEATSLPSELSWRYQFRIPTDCSNFHGF 60

Query: 61  KLAVTVSPTANLRPGVGVSCKEIRDGKYFSDPPTPRFDKSMSFTSGMMLHLLFDEWNFSK 120
           KLAVTVSPTANLRPGVGVSCKEIRDGKYFSDPPTPRFDKSMSFTSGMMLHLLFDEWNFSK
Sbjct: 61  KLAVTVSPTANLRPGVGVSCKEIRDGKYFSDPPTPRFDKSMSFTSGMMLHLLFDEWNFSK 120

Query: 121 AKFLERGKVNWKSDPLASRKKREKVKNTIRLDGSA 156
           AKFLERGKVNWKSDPLASRKKREKVKNTIRLDGSA
Sbjct: 121 AKFLERGKVNWKSDPLASRKKREKVKNTIRLDGSA 155

[Close]
BLAST of Carg24491-RA vs. NCBI nr
Match: KAG6600899.1 (hypothetical protein SDJN03_06132, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-18
Identity = 51/74 (68.92%), Postives = 55/74 (74.32%), Query Frame = 0 

Query: 42  LSWRYQFRIP----TDCSNFHGFKLAVTVSPTANLRPGVGVSCKEIRDGKYFSDPPTPRF 101
           LSWRYQ RIP    T C NFHGFKLAV++S +AN RP VGVSC EIRDGK   D PT R 
Sbjct: 45  LSWRYQLRIPVLPWTSCWNFHGFKLAVSISSSANFRPRVGVSCSEIRDGKCLLDRPTLRL 104

Query: 102 DKSMSFTSGMMLHL 112
           D S+SFTS MMLHL
Sbjct: 105 DSSVSFTSWMMLHL 118

[Close]
BLAST of Carg24491-RA vs. NCBI nr
Match: KAG7031533.1 (hypothetical protein SDJN02_05574, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-04
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 46 YQFRIP----TDCSNFHGFKLAVTVSPTANLRPGVGVS 80
          YQ R+     T+CSNFHGFKL +TVSPTANLRPG GV+
Sbjct: 6  YQLRVAALPWTNCSNFHGFKLTITVSPTANLRPGNGVA 43

The following BLAST results are available for this feature:
BLAST of Carg24491-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7030640.19.6e-85100.00hypothetical protein SDJN02_04677, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6600899.11.2e-1868.92hypothetical protein SDJN03_06132, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7031533.11.7e-0468.42hypothetical protein SDJN02_05574, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg24491-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24491-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24491-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg24491Carg24491gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg24491-RA:1Carg24491-RA:1exon
Carg24491-RA:2Carg24491-RA:2exon
Carg24491-RA:3Carg24491-RA:3exon
Carg24491-RA:4Carg24491-RA:4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg24491-RA:cdsCarg24491-RA:cdsCDS
Carg24491-RA:cdsCarg24491-RA:cds_2CDS
Carg24491-RA:cdsCarg24491-RA:cds_3CDS
Carg24491-RA:cdsCarg24491-RA:cds_4CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg24491-RACarg24491-RA-proteinpolypeptide