Carg23281-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg23281-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr12: 10049580 .. 10050259 (-)
Sequence length339
RNA-Seq ExpressionCarg23281-RA
SyntenyCarg23281-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGAAATATGACCAATAGTGGTTTGAATACGAAGATGGGTACCCAAAGATTCATAGTGAACTTCGACAGGAGCTTCTCTTGAAGCAATAACGTGTTGATCTAGTCACCAACGGAGCCACAAAGGACTATCTAAATTGATTCCTTTCTGGCGATAAGCTCCAATGTTACAAATGGTATAAGAGCCCGACGTCACCGAGGAGGCTGTTCTGAAGGGAAGTAAACACGAGGCGGTGTGCCAGTAAGGACGCTAGACACGGAAGGGGTGGAATGTGAATATTTTATAGAAATTTGAAGTTAAAAATTAAGGGGTTAAATTTGACATTTTCAAAAGATGGAGGACCATGTTGAAAATTCACCAAAAGAAAAGGACCGTCTTATATGCATAACAAACCCACAGTCAAAAGCGGCACGTTTCACATATAATCACTCGATTACAGCTTTTGTCGTACGTCCACTTCGTTTTTTCTCCCATTTTCTTCCTCTTTCGCGCATAAAATCCCAACTCCGCCAATCGCGAACTTCCTATGGATGTTGATCGATTTCCCTCCACTTTCGCCGCCGACTCTGTTCGCCGGAATCCCCTTCGCCGTTCTGTTTCCCGGCGATTCCTCCGGATTCCGCCTCTGTAAGCCGCCTCACTCTTCGACCATTTTCGTGGAGTCCGTTTGTGTCTGA

mRNA sequence

ATGGAGAGAAATATGACCAATAGTGGTTTGAATACGAAGATGGAGCCCGACGTCACCGAGGAGGCTGTTCTGAAGGGAAGTAAACACGAGGCGGTGTGCCACTTTTGTCGTACGTCCACTTCGTTTTTTCTCCCATTTTCTTCCTCTTTCGCGCATAAAATCCCAACTCCGCCAATCGCGAACTTCCTATGGATGTTGATCGATTTCCCTCCACTTTCGCCGCCGACTCTGTTCGCCGGAATCCCCTTCGCCGTTCTGTTTCCCGGCGATTCCTCCGGATTCCGCCTCTGTAAGCCGCCTCACTCTTCGACCATTTTCGTGGAGTCCGTTTGTGTCTGA

Coding sequence (CDS)

ATGGAGAGAAATATGACCAATAGTGGTTTGAATACGAAGATGGAGCCCGACGTCACCGAGGAGGCTGTTCTGAAGGGAAGTAAACACGAGGCGGTGTGCCACTTTTGTCGTACGTCCACTTCGTTTTTTCTCCCATTTTCTTCCTCTTTCGCGCATAAAATCCCAACTCCGCCAATCGCGAACTTCCTATGGATGTTGATCGATTTCCCTCCACTTTCGCCGCCGACTCTGTTCGCCGGAATCCCCTTCGCCGTTCTGTTTCCCGGCGATTCCTCCGGATTCCGCCTCTGTAAGCCGCCTCACTCTTCGACCATTTTCGTGGAGTCCGTTTGTGTCTGA

Protein sequence

MERNMTNSGLNTKMEPDVTEEAVLKGSKHEAVCHFCRTSTSFFLPFSSSFAHKIPTPPIANFLWMLIDFPPLSPPTLFAGIPFAVLFPGDSSGFRLCKPPHSSTIFVESVCV
Homology
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BLAST of Carg23281-RA vs. NCBI nr
Match: KAG7021072.1 (hypothetical protein SDJN02_17760, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 234.2 bits (596), Expect = 5.5e-58
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MERNMTNSGLNTKMEPDVTEEAVLKGSKHEAVCHFCRTSTSFFLPFSSSFAHKIPTPPIA 60
           MERNMTNSGLNTKMEPDVTEEAVLKGSKHEAVCHFCRTSTSFFLPFSSSFAHKIPTPPIA
Sbjct: 1   MERNMTNSGLNTKMEPDVTEEAVLKGSKHEAVCHFCRTSTSFFLPFSSSFAHKIPTPPIA 60

Query: 61  NFLWMLIDFPPLSPPTLFAGIPFAVLFPGDSSGFRLCKPPHSSTIFVESVCV 113
           NFLWMLIDFPPLSPPTLFAGIPFAVLFPGDSSGFRLCKPPHSSTIFVESVCV
Sbjct: 61  NFLWMLIDFPPLSPPTLFAGIPFAVLFPGDSSGFRLCKPPHSSTIFVESVCV 112

The following BLAST results are available for this feature:
BLAST of Carg23281-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021072.15.5e-58100.00hypothetical protein SDJN02_17760, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg23281-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg23281-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg23281-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg23281Carg23281gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg23281-RA:1Carg23281-RA:1exon
Carg23281-RA:2Carg23281-RA:2exon
Carg23281-RA:3Carg23281-RA:3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg23281-RA:cdsCarg23281-RA:cds_3CDS
Carg23281-RA:cdsCarg23281-RA:cds_2CDS
Carg23281-RA:cdsCarg23281-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg23281-RACarg23281-RA-proteinpolypeptide