Carg22519-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTACCGTGCTTGGAACTGGAAGTCTGCGACAGAAGGTTTAGAATCACTTCGGAAAATCATCTGCCACTTTCAGGAATCGGAATCGGAATCTTGTGAACTATGACTACGGATCTCGGATGCGTGATCGTGGCCGTCGATGGCAGCGAGGAAAGCATGAGCGCGTTACGGTGGGCGCTTCAAAATCTCAAGCTCCGGCCATCGGCGCCGGGCGTCACTGACAGCACTTTTATTGTGCTGCATGTTCAACCTCCTCCTTCAATCGCCGCCGGTCTCAGTCCTGCTCCAATCCCCTTTGGTGGTCCTAGTTGAGTTCCGAACTAATAATTTTCTCGCGCTTGTTTCTGAGCTGATGTTGAAAGTTTTCTGAATTCAATGTTTTAATTGGATGTAGCCGATCTGGAGGTTCCTGCTTTCACTGCAGCGATCGAGTCGCATCAGAAGCGGATTACGGCTGCGATATTGGAACATGCTTCACGGATTTGCGCCGAGTACAAGGTTAGGCTCAAATTGGTTGAAGCTTTCGCATAAATTCATTTTCATTATGCTATTTCAACTTGATTATTGCTGTTGAGTTGCGATTATACGAGTTAGCGTAGATATTTACCTCGGATCGCAAGTTTATTAATAGATTTTAACATGTCAATTAGTCGTTAGTGGACTTGAGTCGTTAAATTTTCAGAAACTACGATGATTGTCAGCCTGTGGTGGAGTTTGGTATGCCACGAGTAAAAGAGTAAAGAAGAACAATCTCCGTTGAAGATTCAGACTCCTTTGGCCTTGTTTATCTTTTCTTTCACTTTTTTCTCCCAAAACTAACGAAATGATATATATATATTTTCTCAATTTTTGTTATTATATATATATATTATCAGAGACAATTTCATTGATGAGTGAAATTTACAAGAGGGATGTATAATCCATGATGTTAGTCATTGCAAACTAACGAAATGATTTTGGAAACGAACCTTCAGTAATTTGCTTGAAAATGTGTATATGTGGTGTGTTATTGCTTGTCAAATGTTTAGTCTCAATATTTCTGGGGTATCAATTTCAAGTCGGCATATCATTTTTAACATTTAAACTAATGGTCGAAGCACATTTCATTATGGGATTTTTAGATGAACGTGGAAACAAAAGTAGCAATCGGAGATCCAAAGGATAAGATCTGTGAAGTGGCTGAGAATTTGCATGCTGATTTGCTAGTTATGGGATCCCGTGCCTTTGGTCCTATCAAAAGGTATGGTTTTATAATATATTTCAGTTTGTCTTGCGTCTCTACTTTTCTGCAAGCCACACTATAATCAACTATTAGTCGTTGCTTCTTCGTGTGAACAATTCCAGCATTGTAGATTTGCGAATCACGATGCACGTGACACTGCATAGAAATTAGGCTCTGTCACGTCTGTTTGTACTGTGTTGCTAACTTGTGCACTATCGAAGTAGGTAAAGATTCTAACTGTTTTGTTTAAAGTAAACTCCGACTACATCAAAGAATTCATGGAACCATTTGCTTGCATATCCCAAGTATTCCAGTTTTGCCTCGTAATTATAAGTAAAGCTAGAATGACTTTGAAGATATCAATAACCTGGTAGGTCTCGGAGACCTATCATTCACAATAACACCAAGAATGAGGGGCAGAAGAACACACAAGTACTCTCCCTCTTTGAGAAAACTCTAATCCCAAAATACGAACAAGTTCCAATGCCATACAAAGGCTTTCTCTGCAAGATATGTGTGAGGCTTCCCATTGTTCATATGTATGTTAGAAAGGCAAGGAAGGAAATTCACTGCTGACAGTTAGTTACAAGTCAGAATGGTGCAGTTAGTGTGTGCGCGTGAATATATGATGTCAGGGGGCCTGCTGTGTAGGGTAGGTTTCTTTTGTAATAAGAGCAGAGGTGAGGAGGGAGAGTTTTCCAGCCCTCTCTAACAGCTAGGTATTTGTACGGCCCTAGACTTGTTTATCGGCCACTAATCTAGCTCCTGAAATATATGACATTCTTGATCCTTCCTTTTTTCTACTCTTCTCGGCTGGAGTCATCAATGATTTGTCTCCTCCCTGATGATCTTTTCTATAGGTCGAACTAGTGTGAAAGGTCTAAACATCGACCCTGATTTCTGAACATTATGTTCTTGATGGCGTTTCACCTTCCTCTGAATATCAAGAATTGTAAGGGAGATACTTTACAATATACCTCCCATCCAGACACAGAAGCCTACACGCCTATCCTGTAACAAAGGTGGGGACCACTCCCGCTCCACTAACGCTCACCTCCCTCAACACTGACTAATTAACCATTATCTCCCTTTTCCCCACTCGTGTATGGCAGCATTGTGCTGCTATCATGACCATATACTTGTTTCATGTTTTATTTACTTATCACTGTAGTTTGTTTTGTTATTGTATTCTGGATCACTACAGTTGATGTAATTTCATAAATCTTGTTAGGAAATAACATCAATTGACTGCTGAAGTGAAGGATTATTGAAATTCCTTTGTGATCATACTGCTTCGTGCAGGATGTTCTTGGGAAGTGTAAGCAACTATTGCACCAATCATGTGGAATGCCCAGTCATCGTAGTCAAGGACAAGTTAAAGGGCAGTTCGTCATGAGTTAAACAGGTACACTCAATACTCCATCAGAGGACTCTTTTATGTGTTTGTCAAAACTATACTTTTACTGTCGATTTTATTTTATTCCCTTACTGCTTTTATGACATTGTTTTAGAGTAAATTGTTTGATATATTCTGGCACTTTTATGTCAATTGAAATTGTTTATATTAATTAAAAATCTCAATTTATTTCCCTGGGTTAAATGCCTTTTGACTTGTGGGATACGTCACAGGTTCTGATTCTACATACATTTCCAATTTGATTATACATACAGGCTAATTGTTAAGTTATCGATATCCTGTCGTCATTTGTGCAGGTTTCAGTTGGTTACACTTGAAAATTGCTTATTTCCCACAGCTTTTTCATTAGGGAATAAAGAGGCAACCTTGATATTGTCCATCATACTTTAACTTAATAGTTCGTGGGGTTCTTTAAATATGAGAACAATCCATGTGAATATAGCTTTTTAATTGTTTTTCCGTATCTTTTCTTTTCGGTTTCTGGGTTATTGCTCCCGGGTTCTGAATTTTCGTATCTTATGAATGTTGATGGACCATTCTTCTCAATTTTTACCTTGAAAATGGATCCACATAAACGTTCTGTCTATTTACTGGTATCAAAATTCAGTTTGTCCATTCTGTGAAGGATTTTCTTAGAATTTTCTTCAGTATGGAATAATATTATCTGAAGAGATAATCAAGAATCGAGTAAAAGAGATAAGATATGAACAAGCATGTTTCTTTCGATCCCTTTTCTGACATGTGGGTAGCTAATAACTAATCATTGTGTATTTCACTTGCATTGCAGTTTTTTTTTTGTTAAGCGTGCCTGTTCGACGCTCACCGACATGTCTTATCATCAATTGGATTCCTTTTCTACTATTTTATAATGTTCATAAGCGTTGCAGTTTCTTGTGCATGCCACATCATGCAGCCATATTCATTCTCATCGTCGAGTTTCCAAAACGGTATGTTTCTGTATTTCATAGGCTTCGACACGTCAGTGTCCAGCTGAAAATTGTCTTGCCTTTTGTCAACTTCTACTGTACTCGAGTAACTTTTCGTGTTATTCTATTTCGTCCCTGTAGGTCTAAAAGCTGGTTTGAATCTCTTTTTGTTACAGATGTTTGATTTCAAATTCATGTGCCTCAACTCTTGGACATAACCTTTTTTCTACCCATCTCTGAAGAACAGTGTTATACTAGTTTGGTTCTAATACTTTCATTTTGAAGATTAGGACTAAATTTGTAATTCAATAATGTTCCATACATTTTCAAAAGAATTGATCTGAATCTGAGTAATGGATTGGACCTTGGAGAAAGTAGTTCTACCCACCAGGCCACCACCATGTAAGTTCATTAAGCCATCCCTTAATCTTGATTAGACAAGTGAACCCTTCTAAACTTGACAAATTCAAGATACTTCAAGAATGGTCACTTACTCCAACCAAATTGTTCATTGAGAATAATATCAACCACTAACTCGAATCGAATAATATTGACGTAGGGTTAGAGATGACACAAATTTCACATGTATCTGTGTAATATTGGCAAGTGAATCTTTTGATATTAGGAAATACTATATGCATAGTATAATGGATAGGAATGGATGTTTCACCTTGCAGCAGAAAGACTGATAGGAACGAACGTTTCACCTTGCAGCAAAAAGACTGAAAGGAATGAATGTTTCACCTTTTAGCAGAAAGATCGATAGGAATGAACGTTTCACCTTGCAGCAAAAGACTACACTGATAGGAA TTACCGTGCTTGGAACTGGAAGTCTGCGACAGAAGGTTTAGAATCACTTCGGAAAATCATCTGCCACTTTCAGGAATCGGAATCGGAATCTTGTGAACTATGACTACGGATCTCGGATGCGTGATCGTGGCCGTCGATGGCAGCGAGGAAAGCATGAGCGCGTTACGGTGGGCGCTTCAAAATCTCAAGCTCCGGCCATCGGCGCCGGGCGTCACTGACAGCACTTTTATTGTGCTGCATGTTCAACCTCCTCCTTCAATCGCCGCCGGTCTCAGTCCTGCTCCAATCCCCTTTGGTGGTCCTACCGATCTGGAGGTTCCTGCTTTCACTGCAGCGATCGAGTCGCATCAGAAGCGGATTACGGCTGCGATATTGGAACATGCTTCACGGATTTGCGCCGAGTACAAGATGAACGTGGAAACAAAAGTAGCAATCGGAGATCCAAAGGATAAGATCTGTGAAGTGGCTGAGAATTTGCATGCTGATTTGCTAGTTATGGGATCCCGTGCCTTTGGTCCTATCAAAAGGATGTTCTTGGGAAGTGTAAGCAACTATTGCACCAATCATGTGGAATGCCCAGTCATCGTAGTCAAGGACAAGTTAAAGGGCAGTTCGTCATGAGTTAAACAGTTTTTTTTTTGTTAAGCGTGCCTGTTCGACGCTCACCGACATGTCTTATCATCAATTGGATTCCTTTTCTACTATTTTATAATGTTCATAAGCGTTGCAGTTTCTTGTGCATGCCACATCATGCAGCCATATTCATTCTCATCGTCGAGTTTCCAAAACGGTCTAAAAGCTGGTTTGAATCTCTTTTTGTTACAGATGTTTGATTTCAAATTCATGTGCCTCAACTCTTGGACATAACCTTTTTTCTACCCATCTCTGAAGAACAGTGTTATACTAGTTTGGTTCTAATACTTTCATTTTGAAGATTAGGACTAAATTTGTAATTCAATAATGTTCCATACATTTTCAAAAGAATTGATCTGAATCTGAGTAATGGATTGGACCTTGGAGAAAGTAGTTCTACCCACCAGGCCACCACCATGTAAGTTCATTAAGCCATCCCTTAATCTTGATTAGATATTAGGAAATACTATATGCATAGTATAATGGATAGGAATGGATGTTTCACCTTGCAGCAGAAAGACTGATAGGAACGAACGTTTCACCTTGCAGCAAAAAGACTGAAAGGAATGAATGTTTCACCTTTTAGCAGAAAGATCGATAGGAATGAACGTTTCACCTTGCAGCAAAAGACTACACTGATAGGAA ATGACTACGGATCTCGGATGCGTGATCGTGGCCGTCGATGGCAGCGAGGAAAGCATGAGCGCGTTACGGTGGGCGCTTCAAAATCTCAAGCTCCGGCCATCGGCGCCGGGCGTCACTGACAGCACTTTTATTGTGCTGCATGTTCAACCTCCTCCTTCAATCGCCGCCGGTCTCAGTCCTGCTCCAATCCCCTTTGGTGGTCCTACCGATCTGGAGGTTCCTGCTTTCACTGCAGCGATCGAGTCGCATCAGAAGCGGATTACGGCTGCGATATTGGAACATGCTTCACGGATTTGCGCCGAGTACAAGATGAACGTGGAAACAAAAGTAGCAATCGGAGATCCAAAGGATAAGATCTGTGAAGTGGCTGAGAATTTGCATGCTGATTTGCTAGTTATGGGATCCCGTGCCTTTGGTCCTATCAAAAGGATGTTCTTGGGAAGTGTAAGCAACTATTGCACCAATCATGTGGAATGCCCAGTCATCGTAGTCAAGGACAAGTTAAAGGGCAGTTCGTCATGA MTTDLGCVIVAVDGSEESMSALRWALQNLKLRPSAPGVTDSTFIVLHVQPPPSIAAGLSPAPIPFGGPTDLEVPAFTAAIESHQKRITAAILEHASRICAEYKMNVETKVAIGDPKDKICEVAENLHADLLVMGSRAFGPIKRMFLGSVSNYCTNHVECPVIVVKDKLKGSSS Homology
BLAST of Carg22519-RA vs. NCBI nr
Match: XP_022952023.1 (universal stress protein A-like protein [Cucurbita moschata] >KAG7020244.1 Universal stress protein A-like protein [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 347.4 bits (890), Expect = 6.9e-92 Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
BLAST of Carg22519-RA vs. NCBI nr
Match: XP_023002766.1 (universal stress protein A-like protein [Cucurbita maxima] >XP_023002767.1 universal stress protein A-like protein [Cucurbita maxima]) HSP 1 Score: 341.7 bits (875), Expect = 3.8e-90 Identity = 169/173 (97.69%), Postives = 172/173 (99.42%), Query Frame = 0
BLAST of Carg22519-RA vs. NCBI nr
Match: KAG6585332.1 (Universal stress protein A-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 341.3 bits (874), Expect = 5.0e-90 Identity = 170/173 (98.27%), Postives = 171/173 (98.84%), Query Frame = 0
BLAST of Carg22519-RA vs. NCBI nr
Match: XP_023536734.1 (universal stress protein A-like protein [Cucurbita pepo subsp. pepo]) HSP 1 Score: 337.4 bits (864), Expect = 7.2e-89 Identity = 169/173 (97.69%), Postives = 169/173 (97.69%), Query Frame = 0
BLAST of Carg22519-RA vs. NCBI nr
Match: KAG6598738.1 (Universal stress protein A-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 309.7 bits (792), Expect = 1.6e-80 Identity = 150/173 (86.71%), Postives = 162/173 (93.64%), Query Frame = 0
BLAST of Carg22519-RA vs. ExPASy Swiss-Prot
Match: Q8L4N1 (Universal stress protein PHOS34 OS=Arabidopsis thaliana OX=3702 GN=PHOS34 PE=1 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.3e-11 Identity = 56/176 (31.82%), Postives = 82/176 (46.59%), Query Frame = 0
BLAST of Carg22519-RA vs. ExPASy Swiss-Prot
Match: Q8LGG8 (Universal stress protein A-like protein OS=Arabidopsis thaliana OX=3702 GN=At3g01520 PE=1 SV=2) HSP 1 Score: 70.9 bits (172), Expect = 1.6e-11 Identity = 42/145 (28.97%), Postives = 64/145 (44.14%), Query Frame = 0
BLAST of Carg22519-RA vs. ExPASy Swiss-Prot
Match: Q8VYN9 (Universal stress protein PHOS32 OS=Arabidopsis thaliana OX=3702 GN=PHOS32 PE=1 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 8.2e-11 Identity = 53/165 (32.12%), Postives = 81/165 (49.09%), Query Frame = 0
BLAST of Carg22519-RA vs. ExPASy Swiss-Prot
Match: O07552 (Stress response protein NhaX OS=Bacillus subtilis (strain 168) OX=224308 GN=nhaX PE=2 SV=2) HSP 1 Score: 57.4 bits (137), Expect = 1.9e-07 Identity = 51/164 (31.10%), Postives = 78/164 (47.56%), Query Frame = 0
BLAST of Carg22519-RA vs. ExPASy Swiss-Prot
Match: P42297 (Universal stress protein YxiE OS=Bacillus subtilis (strain 168) OX=224308 GN=yxiE PE=3 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 1.9e-07 Identity = 47/159 (29.56%), Postives = 72/159 (45.28%), Query Frame = 0
BLAST of Carg22519-RA vs. ExPASy TrEMBL
Match: A0A6J1GJB7 (universal stress protein A-like protein OS=Cucurbita moschata OX=3662 GN=LOC111454736 PE=4 SV=1) HSP 1 Score: 347.4 bits (890), Expect = 3.4e-92 Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
BLAST of Carg22519-RA vs. ExPASy TrEMBL
Match: A0A6J1KM84 (universal stress protein A-like protein OS=Cucurbita maxima OX=3661 GN=LOC111496528 PE=4 SV=1) HSP 1 Score: 341.7 bits (875), Expect = 1.8e-90 Identity = 169/173 (97.69%), Postives = 172/173 (99.42%), Query Frame = 0
BLAST of Carg22519-RA vs. ExPASy TrEMBL
Match: A0A6J1KAZ9 (universal stress protein PHOS34 OS=Cucurbita maxima OX=3661 GN=LOC111492229 PE=4 SV=1) HSP 1 Score: 309.3 bits (791), Expect = 1.0e-80 Identity = 149/173 (86.13%), Postives = 162/173 (93.64%), Query Frame = 0
BLAST of Carg22519-RA vs. ExPASy TrEMBL
Match: A0A1S3BBJ3 (universal stress protein Sll1388 OS=Cucumis melo OX=3656 GN=LOC103488134 PE=4 SV=1) HSP 1 Score: 308.1 bits (788), Expect = 2.3e-80 Identity = 151/173 (87.28%), Postives = 160/173 (92.49%), Query Frame = 0
BLAST of Carg22519-RA vs. ExPASy TrEMBL
Match: A0A5A7VGQ9 (Universal stress protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004160 PE=4 SV=1) HSP 1 Score: 308.1 bits (788), Expect = 2.3e-80 Identity = 151/173 (87.28%), Postives = 160/173 (92.49%), Query Frame = 0
BLAST of Carg22519-RA vs. TAIR 10
Match: AT1G09740.1 (Adenine nucleotide alpha hydrolases-like superfamily protein ) HSP 1 Score: 248.1 bits (632), Expect = 5.3e-66 Identity = 122/168 (72.62%), Postives = 139/168 (82.74%), Query Frame = 0
BLAST of Carg22519-RA vs. TAIR 10
Match: AT3G11930.1 (Adenine nucleotide alpha hydrolases-like superfamily protein ) HSP 1 Score: 117.9 bits (294), Expect = 8.3e-27 Identity = 62/161 (38.51%), Postives = 91/161 (56.52%), Query Frame = 0
BLAST of Carg22519-RA vs. TAIR 10
Match: AT3G11930.2 (Adenine nucleotide alpha hydrolases-like superfamily protein ) HSP 1 Score: 115.2 bits (287), Expect = 5.4e-26 Identity = 67/164 (40.85%), Postives = 94/164 (57.32%), Query Frame = 0
BLAST of Carg22519-RA vs. TAIR 10
Match: AT3G11930.4 (Adenine nucleotide alpha hydrolases-like superfamily protein ) HSP 1 Score: 115.2 bits (287), Expect = 5.4e-26 Identity = 67/164 (40.85%), Postives = 94/164 (57.32%), Query Frame = 0
BLAST of Carg22519-RA vs. TAIR 10
Match: AT3G62550.1 (Adenine nucleotide alpha hydrolases-like superfamily protein ) HSP 1 Score: 107.8 bits (268), Expect = 8.6e-24 Identity = 60/161 (37.27%), Postives = 94/161 (58.39%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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