Carg21700-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21700-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr01: 4561891 .. 4564446 (-)
Sequence length1257
RNA-Seq ExpressionCarg21700-RA
SyntenyCarg21700-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTGAGTGCAAAGAAAGAAGGCATTTCCTTTGCTTTCTTGCTTATAAACTTCAGAAACAACACTGTTCAGAAGATGATAAGCCAGAGATTTCAGGAGATGGGAACTAGTCAAAGAAGGTACATTTTTTCTCCTTATCCTCTTTCAACCACCTAGCACCGAGATTGGCTCCAGACTTCCGCTCCTGGTCTCACATGCAAATTGTTGGCATTTCAGGCTGGCCATTACTGACTCGCAGCCCAACACTATTATTTTTCATAAAAAGCTAAGAAACAGCTATGAGTCGCATCGCAGAAACCGGATTCGAACTAGTAAAAAAGTGGTCAAATCGGTGTCAACTGCCGTCCTGTTGTCAAAGCGTAGCCATCAGCGCTCACATATTTTCGGAGGGCTAGATTGAACTTAACTGGCAAAGTGTTGGCAGTTTGTTTAAATTACCACATACACGTTAAATGGAAAGAATGGAATTTCGAGGAATTAATCACATGAGATTCACCTGTAGCTGCTTACTGCTACGTCTTTATAAATGGAACCGACCAATAACAATACGTAATATTCTGTTTTTGTGTGGGATTTATGTTAGCTTCCCGTCAGGGTGCGTTGTTAAAAATCATCAGTTGTATTAGGGCAAGATGGTCCTTCCACGCATCCAACCCGGTTTCTAATATCCGGTTTCAATACAATAACCTCTCTGCGAGTTTTCCCGCCCTCATCCAAGCTCGATTTTCTATGACTTATGGCCACCTGATGTCAGTTCAACAGATCCTACCGGCGTTGCGCTTCTGACGAGGGAGCGAGCCCATGACCGGAGTCTCAATCTCATTGCCCTCTTAACAGTTTGAGAAATAGGTCCGAGGGCGTTGCGCCGATGCCTCCCATCAAATTATTGGGCTTTTATAACCCCGATAGATAAGCTTCTCGATACCGCACGACGGACGCCCTTCCAGCTAATTACCCTAAGAGGGAAACTTCGGAGGAGTAACGCATGTTTACTTTAGAGAACCTTAAGGGGAAGCCCATAAGGGAACGTGTCCCGAAAGGATTAAGATACTATTTCGTGCCCTCATAATTAGATGCCAATCAAAGTAGGCTTGGAGCGTCTTGTTTATGACAACAATCAGTTAATAGTATGCTGCAGAGGGCCCTCACCAGAGTTTCACCTCATTATGCGTCGACTCTCGCGCGGTGAGGCATAGCTATACTCAATGTCTTCGCACGAGGCTCCGCAGAAGTGACTAGGGCAGCTCACACTCGAGCCCTCACCCTTGGTCGAAAAGATAGATCAAGTTCGTGGTGGTGAGATCTGGTAGCACCCAGCAACAAGCAGGATCTCCGAACCGAGTTTAGCAGCTACGTAGTATGCGGCTATATACGAATATTTCGTGTGTATAAAGGACTGGATAGGTTTACTTCGCCACCGTCACCAGCACAACATTGCAGCACATTGTCGAACACTTTGTGGTCGGTTTGTTTTCAAGAACGAGTACGTTATATGGGAATGCGAAAAGGAGGACGAATGCCTCGAAAGGAAAAAGGAAGGGCACGGGCTGGGAGAGGCATTCGAGAAAGTAGTGTGCGCGAGCCTGCACATAGAGCTTTAAGCTCAACGATCGGGAACGACGTACCTGTTCTCTACCACTAACCTACAAAAGCCGTCGTGGCTTTTGTGTCCGTTCCGTGTGTGTTTCTCAATACACCGTGCGTATCTAAGGCTCAGTCGAAATTGGCGGAACTGCTTTCAACCTTCCATGACATCTACCGATCTTTACTGGCAGGCTATTTGCTCAGGAGGGTGATACAGTTTTCCTCGCTCTCTCGCTAACCCCAGACGAAACTTTAATAAACGAAAAGCTACTAGTTCTCGTGACTTTCCTTTCCACTCAAAAGTACTCCTTATCTTTCCCGCGGTATATGTGTGAGGCATATCTGGGTATCATTCCACAGCCAAGAACAAGATCCTTCAAAGAGGGTACCGATGAAAATTGCAGCTATATCCACTTTCCTAACTCTTTTTAGTCCCATTGGCACGCACTTGCTCGCGGTTGTCACGAATGCAAGCAGAAGCTTTAAGATATCTGGGATCCTGGCATTCACGCACCCAACTTTCCGTGACACGCGCCTTCGTGGTCTGCGACGGTCCATTTTCCAGATAAAAAGGAGTCCAAAGGGTTACAATGGCATTTTTCAAACCAAATGAAAGAAGATTATGATTCAAGGGACATAGAGTTTTGGGCTCGAAGCGTCCCCGGGGCTTCAGTTCCCCATCCCTTCGCCTGGCGACGACTCCAGCTGCACTCTCCTTCAATCTCACGCGTCAAGTTGTGCACGGTCCGGGTCGGCGGGCCTTCTCCTCACTTTCGCGTCCGAGGGCGCCCGCTTTCTCCGCTGGGCTCTTCCCGGTTCGCTCTCGCGTTACTGGGTCTTGTACGTTTTTTTCCACTGACAGCTGAATCTGTGCGGAACGAGTTACAATATGACCCGAATTATAAGAGTACAGGCGGGGAAAGCCACAAGAACCACCACTTCCAGGAGTCGGCACAGAATGCACATTAA

mRNA sequence

ATGGAGTTGAGTGCAAAGAAAGAAGGCATTTCCTTTGCTTTCTTGCTTATAAACTTCAGAAACAACACTGTTCAGAAGATGATAAGCCAGAGATTTCAGGAGATGGGAACTAGTCAAAGAAGTTCAACAGATCCTACCGGCGTTGCGCTTCTGACGAGGGAGCGAGCCCATGACCGGAGTCTCAATCTCATTGCCCTCTTAACAATGCCAATCAAAGTAGGCTTGGAGCGTCTTGTTTATGACAACAATCAGTTAATAGTATGCTGCAGAGGGCCCTCACCAGAGTTTCACCTCATTATGCGTCGACTCTCGCGCGCACCCAGCAACAAGCAGGATCTCCGAACCGAGTTTAGCAGCTACGTAGTATGCGGCTATATACGAATATTTCGTGTGTATAAAGGACTGGATAGGTTTACTTCGCCACCGTCACCAGCACAACATTGCAGCACATTGTCGAACACTTTGTGGTCGGTTTGTTTTCAAGAACGAGTACGTTATATGGGAATGCGAAAAGGAGGACGAATGCCTCGAAAGGAAAAAGGAAGGGCACGGGCTGGGAGAGGCATTCGAGAAAGTAGTGTGCGCGAGCCTGCACATAGAGCTTTAAGCTCAACGATCGGGAACGACGTACCTGCTCAGTCGAAATTGGCGGAACTGCTTTCAACCTTCCATGACATCTACCGATCTTTACTGGCAGGCTATTTGCTCAGGAGGGTGATACACCAAGAACAAGATCCTTCAAAGAGGGTACCGATGAAAATTGCAGCTATATCCACTTTCCTAACTCTTTTTAGTCCCATTGGCACGCACTTGCTCGCGGTTGTCACGAATGCAAGCAGAAGCTTTAAGATATCTGGGATCCTGGCATTCACGCACCCAACTTTCCGTGACACGCGCCTTCGTGAAGATTATGATTCAAGGGACATAGAGTTTTGGGCTCGAAGCGTCCCCGGGGCTTCAGTTCCCCATCCCTTCGCCTGGCGACGACTCCAGCTGCACTCTCCTTCAATCTCACGCGTCAAGTTGTGCACGGTCCGGGTCGGCGGGCCTTCTCCTCACTTTCGCGTCCGAGGGCGCCCGCTTTCTCCGCTGGGCTCTTCCCGGTTCGCTCTCGCGTTACTGGGTCTTGTACGTTTTTTTCCACTGACAGCTGAATCTGTGCGGAACGAGTTACAATATGACCCGAATTATAAGAGTACAGGCGGGGAAAGCCACAAGAACCACCACTTCCAGGAGTCGGCACAGAATGCACATTAA

Coding sequence (CDS)

ATGGAGTTGAGTGCAAAGAAAGAAGGCATTTCCTTTGCTTTCTTGCTTATAAACTTCAGAAACAACACTGTTCAGAAGATGATAAGCCAGAGATTTCAGGAGATGGGAACTAGTCAAAGAAGTTCAACAGATCCTACCGGCGTTGCGCTTCTGACGAGGGAGCGAGCCCATGACCGGAGTCTCAATCTCATTGCCCTCTTAACAATGCCAATCAAAGTAGGCTTGGAGCGTCTTGTTTATGACAACAATCAGTTAATAGTATGCTGCAGAGGGCCCTCACCAGAGTTTCACCTCATTATGCGTCGACTCTCGCGCGCACCCAGCAACAAGCAGGATCTCCGAACCGAGTTTAGCAGCTACGTAGTATGCGGCTATATACGAATATTTCGTGTGTATAAAGGACTGGATAGGTTTACTTCGCCACCGTCACCAGCACAACATTGCAGCACATTGTCGAACACTTTGTGGTCGGTTTGTTTTCAAGAACGAGTACGTTATATGGGAATGCGAAAAGGAGGACGAATGCCTCGAAAGGAAAAAGGAAGGGCACGGGCTGGGAGAGGCATTCGAGAAAGTAGTGTGCGCGAGCCTGCACATAGAGCTTTAAGCTCAACGATCGGGAACGACGTACCTGCTCAGTCGAAATTGGCGGAACTGCTTTCAACCTTCCATGACATCTACCGATCTTTACTGGCAGGCTATTTGCTCAGGAGGGTGATACACCAAGAACAAGATCCTTCAAAGAGGGTACCGATGAAAATTGCAGCTATATCCACTTTCCTAACTCTTTTTAGTCCCATTGGCACGCACTTGCTCGCGGTTGTCACGAATGCAAGCAGAAGCTTTAAGATATCTGGGATCCTGGCATTCACGCACCCAACTTTCCGTGACACGCGCCTTCGTGAAGATTATGATTCAAGGGACATAGAGTTTTGGGCTCGAAGCGTCCCCGGGGCTTCAGTTCCCCATCCCTTCGCCTGGCGACGACTCCAGCTGCACTCTCCTTCAATCTCACGCGTCAAGTTGTGCACGGTCCGGGTCGGCGGGCCTTCTCCTCACTTTCGCGTCCGAGGGCGCCCGCTTTCTCCGCTGGGCTCTTCCCGGTTCGCTCTCGCGTTACTGGGTCTTGTACGTTTTTTTCCACTGACAGCTGAATCTGTGCGGAACGAGTTACAATATGACCCGAATTATAAGAGTACAGGCGGGGAAAGCCACAAGAACCACCACTTCCAGGAGTCGGCACAGAATGCACATTAA

Protein sequence

MELSAKKEGISFAFLLINFRNNTVQKMISQRFQEMGTSQRSSTDPTGVALLTRERAHDRSLNLIALLTMPIKVGLERLVYDNNQLIVCCRGPSPEFHLIMRRLSRAPSNKQDLRTEFSSYVVCGYIRIFRVYKGLDRFTSPPSPAQHCSTLSNTLWSVCFQERVRYMGMRKGGRMPRKEKGRARAGRGIRESSVREPAHRALSSTIGNDVPAQSKLAELLSTFHDIYRSLLAGYLLRRVIHQEQDPSKRVPMKIAAISTFLTLFSPIGTHLLAVVTNASRSFKISGILAFTHPTFRDTRLREDYDSRDIEFWARSVPGASVPHPFAWRRLQLHSPSISRVKLCTVRVGGPSPHFRVRGRPLSPLGSSRFALALLGLVRFFPLTAESVRNELQYDPNYKSTGGESHKNHHFQESAQNAH
Homology
[Close]
BLAST of Carg21700-RA vs. NCBI nr
Match: KAG7037131.1 (hypothetical protein SDJN02_00753, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 833.2 bits (2151), Expect = 1.0e-237
Identity = 418/418 (100.00%), Postives = 418/418 (100.00%), Query Frame = 0 

Query: 1   MELSAKKEGISFAFLLINFRNNTVQKMISQRFQEMGTSQRSSTDPTGVALLTRERAHDRS 60
           MELSAKKEGISFAFLLINFRNNTVQKMISQRFQEMGTSQRSSTDPTGVALLTRERAHDRS
Sbjct: 1   MELSAKKEGISFAFLLINFRNNTVQKMISQRFQEMGTSQRSSTDPTGVALLTRERAHDRS 60

Query: 61  LNLIALLTMPIKVGLERLVYDNNQLIVCCRGPSPEFHLIMRRLSRAPSNKQDLRTEFSSY 120
           LNLIALLTMPIKVGLERLVYDNNQLIVCCRGPSPEFHLIMRRLSRAPSNKQDLRTEFSSY
Sbjct: 61  LNLIALLTMPIKVGLERLVYDNNQLIVCCRGPSPEFHLIMRRLSRAPSNKQDLRTEFSSY 120

Query: 121 VVCGYIRIFRVYKGLDRFTSPPSPAQHCSTLSNTLWSVCFQERVRYMGMRKGGRMPRKEK 180
           VVCGYIRIFRVYKGLDRFTSPPSPAQHCSTLSNTLWSVCFQERVRYMGMRKGGRMPRKEK
Sbjct: 121 VVCGYIRIFRVYKGLDRFTSPPSPAQHCSTLSNTLWSVCFQERVRYMGMRKGGRMPRKEK 180

Query: 181 GRARAGRGIRESSVREPAHRALSSTIGNDVPAQSKLAELLSTFHDIYRSLLAGYLLRRVI 240
           GRARAGRGIRESSVREPAHRALSSTIGNDVPAQSKLAELLSTFHDIYRSLLAGYLLRRVI
Sbjct: 181 GRARAGRGIRESSVREPAHRALSSTIGNDVPAQSKLAELLSTFHDIYRSLLAGYLLRRVI 240

Query: 241 HQEQDPSKRVPMKIAAISTFLTLFSPIGTHLLAVVTNASRSFKISGILAFTHPTFRDTRL 300
           HQEQDPSKRVPMKIAAISTFLTLFSPIGTHLLAVVTNASRSFKISGILAFTHPTFRDTRL
Sbjct: 241 HQEQDPSKRVPMKIAAISTFLTLFSPIGTHLLAVVTNASRSFKISGILAFTHPTFRDTRL 300

Query: 301 REDYDSRDIEFWARSVPGASVPHPFAWRRLQLHSPSISRVKLCTVRVGGPSPHFRVRGRP 360
           REDYDSRDIEFWARSVPGASVPHPFAWRRLQLHSPSISRVKLCTVRVGGPSPHFRVRGRP
Sbjct: 301 REDYDSRDIEFWARSVPGASVPHPFAWRRLQLHSPSISRVKLCTVRVGGPSPHFRVRGRP 360

Query: 361 LSPLGSSRFALALLGLVRFFPLTAESVRNELQYDPNYKSTGGESHKNHHFQESAQNAH 419
           LSPLGSSRFALALLGLVRFFPLTAESVRNELQYDPNYKSTGGESHKNHHFQESAQNAH
Sbjct: 361 LSPLGSSRFALALLGLVRFFPLTAESVRNELQYDPNYKSTGGESHKNHHFQESAQNAH 418

[Close]
BLAST of Carg21700-RA vs. NCBI nr
Match: XP_022949514.1 (uncharacterized protein LOC111452841 [Cucurbita moschata])

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-10
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 1  MELSAKKEGISFAFLLINFRNNTVQKMISQRFQEMGTSQR 41
          MELSAKKEGISFAFLLINFRNNTVQKMISQRFQEMGTSQR
Sbjct: 1  MELSAKKEGISFAFLLINFRNNTVQKMISQRFQEMGTSQR 40

[Close]
BLAST of Carg21700-RA vs. NCBI nr
Match: XP_022998325.1 (uncharacterized protein LOC111492995 [Cucurbita maxima])

HSP 1 Score: 75.9 bits (185), Expect = 9.4e-10
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 0 

Query: 1  MELSAKKEGISFAFLLINFRNNTVQKMISQRFQEMGTSQR 41
          MELSAKKEGISFA LLINFRNNTVQKMISQRFQEMGTSQR
Sbjct: 1  MELSAKKEGISFASLLINFRNNTVQKMISQRFQEMGTSQR 40

[Close]
BLAST of Carg21700-RA vs. NCBI nr
Match: KAG6607475.1 (hypothetical protein SDJN03_00817, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-08
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 1  MELSAKKEGISFAFLLINFRNNTVQKMISQRFQEMGTSQR 41
          MELSAK+ GISFAFLLINFRNNTVQKMISQRFQEMG SQR
Sbjct: 1  MELSAKQGGISFAFLLINFRNNTVQKMISQRFQEMGPSQR 40

[Close]
BLAST of Carg21700-RA vs. NCBI nr
Match: XP_023525856.1 (uncharacterized protein LOC111789346 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-08
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 1  MELSAKKEGISFAFLLINFRNNTVQKMISQRFQEMGTSQR 41
          MELSAK+EGISFA L INFRNNTVQKMISQRFQEMGTSQR
Sbjct: 1  MELSAKQEGISFASLPINFRNNTVQKMISQRFQEMGTSQR 40

[Close]
BLAST of Carg21700-RA vs. ExPASy TrEMBL
Match: A0A6J1GD18 (uncharacterized protein LOC111452841 OS=Cucurbita moschata OX=3662 GN=LOC111452841 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.4e-11
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 1  MELSAKKEGISFAFLLINFRNNTVQKMISQRFQEMGTSQR 41
          MELSAKKEGISFAFLLINFRNNTVQKMISQRFQEMGTSQR
Sbjct: 1  MELSAKKEGISFAFLLINFRNNTVQKMISQRFQEMGTSQR 40

[Close]
BLAST of Carg21700-RA vs. ExPASy TrEMBL
Match: A0A6J1KC68 (uncharacterized protein LOC111492995 OS=Cucurbita maxima OX=3661 GN=LOC111492995 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.6e-10
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 0 

Query: 1  MELSAKKEGISFAFLLINFRNNTVQKMISQRFQEMGTSQR 41
          MELSAKKEGISFA LLINFRNNTVQKMISQRFQEMGTSQR
Sbjct: 1  MELSAKKEGISFASLLINFRNNTVQKMISQRFQEMGTSQR 40

The following BLAST results are available for this feature:
BLAST of Carg21700-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037131.11.0e-237100.00hypothetical protein SDJN02_00753, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022949514.11.1e-10100.00uncharacterized protein LOC111452841 [Cucurbita moschata][more]
XP_022998325.19.4e-1097.50uncharacterized protein LOC111492995 [Cucurbita maxima][more]
KAG6607475.11.0e-0892.50hypothetical protein SDJN03_00817, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023525856.11.8e-0892.50uncharacterized protein LOC111789346 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg21700-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21700-RA vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GD185.4e-11100.00uncharacterized protein LOC111452841 OS=Cucurbita moschata OX=3662 GN=LOC1114528... [more]
A0A6J1KC684.6e-1097.50uncharacterized protein LOC111492995 OS=Cucurbita maxima OX=3661 GN=LOC111492995... [more]
BLAST of Carg21700-RA vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 171..203
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 182..197
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 395..418

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg21700Carg21700gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg21700-RA:1Carg21700-RA:1exon
Carg21700-RA:2Carg21700-RA:2exon
Carg21700-RA:3Carg21700-RA:3exon
Carg21700-RA:4Carg21700-RA:4exon
Carg21700-RA:5Carg21700-RA:5exon
Carg21700-RA:6Carg21700-RA:6exon
Carg21700-RA:7Carg21700-RA:7exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg21700-RA:cdsCarg21700-RA:cds_7CDS
Carg21700-RA:cdsCarg21700-RA:cds_6CDS
Carg21700-RA:cdsCarg21700-RA:cds_5CDS
Carg21700-RA:cdsCarg21700-RA:cds_4CDS
Carg21700-RA:cdsCarg21700-RA:cds_3CDS
Carg21700-RA:cdsCarg21700-RA:cds_2CDS
Carg21700-RA:cdsCarg21700-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg21700-RACarg21700-RA-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010033 response to organic substance
biological_process GO:1901700 response to oxygen-containing compound
biological_process GO:0006950 response to stress