Carg21233-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21233-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L17
Location	Carg_Chr18: 7786818 .. 7787608 (+)
Sequence length	513
RNA-Seq Expression	Carg21233-RA
Synteny	Carg21233-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATACAAGAGAGACTGCGCACGCCCTTAGGAAGTTGCCCTTGGCCAAGGCAAAGAGGTATTTGGAGGATGTTCTTGCCCACAAGCAGGCTATTCCATTCCGACGTTTCTGCGGAGGAGTTGGACGAACTGCTCAGGCAAAAAATAGGCACTCAAATGGTCAAGGACGCTGGCCTGTTAAGTCTGCAAAATTCATTCTAGATCTTCTTAAGAATGCCGAGAGTAATGCCGAAGTACGTATAACCTTCTCTCCTAGTTACTTATGCCATCCCTGTTTTTGATAACGATTCTGACCCGACTATGGTATCTTCCTCATTCAGGTGAAAGGACTGGACGTTGATTCTCTCATTGTATCCCACATCCAGGTGAATCAAGCACAAAAACAAAGACGCCGTACCTACCGTGCTCACGGAAGAATTAACCGTATGTTTTTTTTCCTTAAGATCTCAAAAAGAACAACACTAAATTGTTTCTGGGTTTGATCATTGCATAAACTATCTGGAACGTTTGGTGTCTAATTTTTTCTTGTGCAGCCTATATGTCATCTCCATGCCACATCGAGCTTATTTTGTCAGAAAAGGAAGAACCTGTGAAGAAAGAGGTAAAATTTGTATTAGATTTGTATATATTAGTGTGTTTAGGGGGAGGGGTTGCTGATAAATGCTTGGTTTTGTGGTGGCAGCCTGAGACCCAGTTGGCAACGAGTAATAAAAGCAAGAAGGGTCAAGCTCTCCGCAGTGGTGCTTCATCCTGATCAAATATTATTGCCGCATTTTGTACTTTTTTTTTTTTT

mRNA sequence

AATACAAGAGAGACTGCGCACGCCCTTAGGAAGTTGCCCTTGGCCAAGGCAAAGAGGTATTTGGAGGATGTTCTTGCCCACAAGCAGGCTATTCCATTCCGACGTTTCTGCGGAGGAGTTGGACGAACTGCTCAGGCAAAAAATAGGCACTCAAATGGTCAAGGACGCTGGCCTGTTAAGTCTGCAAAATTCATTCTAGATCTTCTTAAGAATGCCGAGAGTAATGCCGAAGTGAAAGGACTGGACGTTGATTCTCTCATTGTATCCCACATCCAGGTGAATCAAGCACAAAAACAAAGACGCCGTACCTACCGTGCTCACGGAAGAATTAACCCCTATATGTCATCTCCATGCCACATCGAGCTTATTTTGTCAGAAAAGGAAGAACCTGTGAAGAAAGAGCCTGAGACCCAGTTGGCAACGAGTAATAAAAGCAAGAAGGGTCAAGCTCTCCGCAGTGGTGCTTCATCCTGATCAAATATTATTGCCGCATTTTGTACTTTTTTTTTTTTT

Coding sequence (CDS)

AATACAAGAGAGACTGCGCACGCCCTTAGGAAGTTGCCCTTGGCCAAGGCAAAGAGGTATTTGGAGGATGTTCTTGCCCACAAGCAGGCTATTCCATTCCGACGTTTCTGCGGAGGAGTTGGACGAACTGCTCAGGCAAAAAATAGGCACTCAAATGGTCAAGGACGCTGGCCTGTTAAGTCTGCAAAATTCATTCTAGATCTTCTTAAGAATGCCGAGAGTAATGCCGAAGTGAAAGGACTGGACGTTGATTCTCTCATTGTATCCCACATCCAGGTGAATCAAGCACAAAAACAAAGACGCCGTACCTACCGTGCTCACGGAAGAATTAACCCCTATATGTCATCTCCATGCCACATCGAGCTTATTTTGTCAGAAAAGGAAGAACCTGTGAAGAAAGAGCCTGAGACCCAGTTGGCAACGAGTAATAAAAGCAAGAAGGGTCAAGCTCTCCGCAGTGGTGCTTCATCCTGA

Protein sequence

NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS

Homology

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BLAST of Carg21233-RA vs. NCBI nr
Match: KAG7012735.1 (60S ribosomal protein L17-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 307.0 bits (785), Expect = 9.4e-80
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 60
           NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK
Sbjct: 1   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 60

Query: 61  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 120
           SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI
Sbjct: 61  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 120

Query: 121 ELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS 158
           ELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS
Sbjct: 121 ELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS 157

[Close]

BLAST of Carg21233-RA vs. NCBI nr
Match: KAG6573648.1 (60S ribosomal protein L17-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 300.4 bits (768), Expect = 8.8e-78
Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 60
           NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK
Sbjct: 49  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 108

Query: 61  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 120
           SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI
Sbjct: 109 SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 168

Query: 121 ELILSEKEEPVKKEPETQLATSNKSKKGQALRSG 155
           ELILSEKEE VKKEPETQLATSNKSKKGQALRSG
Sbjct: 169 ELILSEKEETVKKEPETQLATSNKSKKGQALRSG 202

[Close]

BLAST of Carg21233-RA vs. NCBI nr
Match: XP_022945920.1 (60S ribosomal protein L17-2 [Cucurbita moschata] >XP_022966986.1 60S ribosomal protein L17-2-like [Cucurbita maxima] >XP_023541703.1 60S ribosomal protein L17-2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300.1 bits (767), Expect = 1.2e-77
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 60
           NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK
Sbjct: 28  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 87

Query: 61  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 120
           SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI
Sbjct: 88  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 147

Query: 121 ELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS 158
           ELILSEKEEPVKKEPETQLATS KSKKGQALRSGASS
Sbjct: 148 ELILSEKEEPVKKEPETQLATS-KSKKGQALRSGASS 183

[Close]

BLAST of Carg21233-RA vs. NCBI nr
Match: XP_008446047.1 (PREDICTED: 60S ribosomal protein L17-2 [Cucumis melo] >XP_011655562.1 60S ribosomal protein L17-2 [Cucumis sativus] >KAA0034200.1 60S ribosomal protein L17-2 [Cucumis melo var. makuwa] >KGN51678.1 hypothetical protein Csa_007731 [Cucumis sativus] >TYK15720.1 60S ribosomal protein L17-2 [Cucumis melo var. makuwa])

HSP 1 Score: 297.7 bits (761), Expect = 5.7e-77
Identity = 155/157 (98.73%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 60
           NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK
Sbjct: 28  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 87

Query: 61  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 120
           SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI
Sbjct: 88  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 147

Query: 121 ELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS 158
           ELILSEKEEPVKKEPETQLATS KSKK QALRSGASS
Sbjct: 148 ELILSEKEEPVKKEPETQLATS-KSKKSQALRSGASS 183

[Close]

BLAST of Carg21233-RA vs. NCBI nr
Match: XP_022956721.1 (60S ribosomal protein L17-2-like [Cucurbita moschata] >XP_023549829.1 60S ribosomal protein L17-2-like [Cucurbita pepo subsp. pepo] >KAG6601595.1 60S ribosomal protein L17-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 294.7 bits (753), Expect = 4.8e-76
Identity = 152/157 (96.82%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 60
           NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK
Sbjct: 28  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 87

Query: 61  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 120
           SAKFILDLL+NAESNAEVKGLDVDSLI+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI
Sbjct: 88  SAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 147

Query: 121 ELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS 158
           ELILSEK+EPVKKEPETQLATS KSKK QALRSGASS
Sbjct: 148 ELILSEKKEPVKKEPETQLATS-KSKKSQALRSGASS 183

[Close]

BLAST of Carg21233-RA vs. ExPASy Swiss-Prot
Match: Q93VI3 (60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.2e-69
Identity = 132/148 (89.19%), Postives = 139/148 (93.92%), Query Frame = 0


Query: 1   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 60
           NTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQAKNRHSNGQGRWP K
Sbjct: 28  NTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAK 87

Query: 61  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 120
           SA+F+LDLLKNAESNAEVKGLDVD+L +SHIQVNQA KQRRRTYRAHGRINPYMS+PCHI
Sbjct: 88  SAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHI 147

Query: 121 ELILSEKEEPVKKEPETQLATSNKSKKG 149
           ELILSEKEEPVKKEPETQLA   KSKKG
Sbjct: 148 ELILSEKEEPVKKEPETQLAA--KSKKG 173

[Close]

BLAST of Carg21233-RA vs. ExPASy Swiss-Prot
Match: P51413 (60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2)

HSP 1 Score: 262.7 bits (670), Expect = 2.7e-69
Identity = 132/150 (88.00%), Postives = 139/150 (92.67%), Query Frame = 0


Query: 1   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 60
           NTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQAKNRHSNGQGRWP K
Sbjct: 28  NTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAK 87

Query: 61  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 120
           SA+F+LDLLKNAESNAEVKGLDVD+L +SHIQVNQA KQRRRTYRAHGRINPYMS+PCHI
Sbjct: 88  SAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHI 147

Query: 121 ELILSEKEEPVKKEPETQLATSNKSKKGQA 151
           ELILSEKEEPVKKEPETQLA   KSKK  A
Sbjct: 148 ELILSEKEEPVKKEPETQLAA--KSKKSAA 175

[Close]

BLAST of Carg21233-RA vs. ExPASy Swiss-Prot
Match: O48557 (60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 4.3e-67
Identity = 126/140 (90.00%), Postives = 134/140 (95.71%), Query Frame = 0


Query: 1   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 60
           NTRETA ALRKLPL KAKRYLEDV+AHKQAIPFRR+CGGVGRTAQAK+RHSNGQGRWPVK
Sbjct: 28  NTRETAFALRKLPLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVK 87

Query: 61  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 120
           SA+FILDLLKNAESNA+VKGLDVD+L VSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI
Sbjct: 88  SARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 147

Query: 121 ELILSEKEEPVKKEPETQLA 141
           ELILSEKEEPVKKE +  +A
Sbjct: 148 ELILSEKEEPVKKEADNIVA 167

[Close]

BLAST of Carg21233-RA vs. ExPASy Swiss-Prot
Match: P35266 (60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.0e-65
Identity = 122/140 (87.14%), Postives = 130/140 (92.86%), Query Frame = 0


Query: 1   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 60
           NTRETA ALRK+PL KAKRYLEDVLAHKQAIPFRR+C GVGRTAQ KNR  NGQGRWP K
Sbjct: 28  NTRETAFALRKMPLNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAK 87

Query: 61  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 120
           SAKF+LDLLKNAESNAEVKGLDVD+L +SHIQVNQAQKQRRRTYRAHGRINPYMS+PCHI
Sbjct: 88  SAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHI 147

Query: 121 ELILSEKEEPVKKEPETQLA 141
           ELILSEKEEPVKKE E+ +A
Sbjct: 148 ELILSEKEEPVKKEAESHIA 167

[Close]

BLAST of Carg21233-RA vs. ExPASy Swiss-Prot
Match: P35267 (60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 9.8e-64
Identity = 119/140 (85.00%), Postives = 129/140 (92.14%), Query Frame = 0


Query: 1   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 60
           NTRETA ALR++PL KAKRYLEDVLAHKQAIPFRR+C GVGRTAQ KNR  NGQGRWP K
Sbjct: 28  NTRETAFALRRMPLGKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAK 87

Query: 61  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 120
           SA+F+LDLLKNAESNAEVKGLDVD+L +SHIQVNQAQKQRRRTYRAHGRINPYMS+PCHI
Sbjct: 88  SAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHI 147

Query: 121 ELILSEKEEPVKKEPETQLA 141
           ELILSEKEEPVKKE +  +A
Sbjct: 148 ELILSEKEEPVKKEADNVVA 167

[Close]

BLAST of Carg21233-RA vs. ExPASy TrEMBL
Match: A0A6J1HQT9 (60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111466530 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 5.6e-78
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 60
           NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK
Sbjct: 28  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 87

Query: 61  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 120
           SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI
Sbjct: 88  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 147

Query: 121 ELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS 158
           ELILSEKEEPVKKEPETQLATS KSKKGQALRSGASS
Sbjct: 148 ELILSEKEEPVKKEPETQLATS-KSKKGQALRSGASS 183

[Close]

BLAST of Carg21233-RA vs. ExPASy TrEMBL
Match: A0A6J1G2C7 (60S ribosomal protein L17-2 OS=Cucurbita moschata OX=3662 GN=LOC111450019 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 5.6e-78
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 60
           NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK
Sbjct: 28  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 87

Query: 61  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 120
           SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI
Sbjct: 88  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 147

Query: 121 ELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS 158
           ELILSEKEEPVKKEPETQLATS KSKKGQALRSGASS
Sbjct: 148 ELILSEKEEPVKKEPETQLATS-KSKKGQALRSGASS 183

[Close]

BLAST of Carg21233-RA vs. ExPASy TrEMBL
Match: A0A5A7STA3 (60S ribosomal protein L17-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002190 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.8e-77
Identity = 155/157 (98.73%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 60
           NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK
Sbjct: 28  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 87

Query: 61  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 120
           SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI
Sbjct: 88  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 147

Query: 121 ELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS 158
           ELILSEKEEPVKKEPETQLATS KSKK QALRSGASS
Sbjct: 148 ELILSEKEEPVKKEPETQLATS-KSKKSQALRSGASS 183

[Close]

BLAST of Carg21233-RA vs. ExPASy TrEMBL
Match: A0A0A0KPZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589950 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.8e-77
Identity = 155/157 (98.73%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 60
           NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK
Sbjct: 28  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 87

Query: 61  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 120
           SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI
Sbjct: 88  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 147

Query: 121 ELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS 158
           ELILSEKEEPVKKEPETQLATS KSKK QALRSGASS
Sbjct: 148 ELILSEKEEPVKKEPETQLATS-KSKKSQALRSGASS 183

[Close]

BLAST of Carg21233-RA vs. ExPASy TrEMBL
Match: A0A1S3BDN4 (60S ribosomal protein L17-2 OS=Cucumis melo OX=3656 GN=LOC103488896 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.8e-77
Identity = 155/157 (98.73%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 60
           NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK
Sbjct: 28  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 87

Query: 61  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 120
           SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI
Sbjct: 88  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 147

Query: 121 ELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS 158
           ELILSEKEEPVKKEPETQLATS KSKK QALRSGASS
Sbjct: 148 ELILSEKEEPVKKEPETQLATS-KSKKSQALRSGASS 183

[Close]

BLAST of Carg21233-RA vs. TAIR 10
Match: AT1G27400.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 263.8 bits (673), Expect = 8.5e-71
Identity = 132/148 (89.19%), Postives = 139/148 (93.92%), Query Frame = 0


Query: 1   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 60
           NTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQAKNRHSNGQGRWP K
Sbjct: 28  NTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAK 87

Query: 61  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 120
           SA+F+LDLLKNAESNAEVKGLDVD+L +SHIQVNQA KQRRRTYRAHGRINPYMS+PCHI
Sbjct: 88  SAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHI 147

Query: 121 ELILSEKEEPVKKEPETQLATSNKSKKG 149
           ELILSEKEEPVKKEPETQLA   KSKKG
Sbjct: 148 ELILSEKEEPVKKEPETQLAA--KSKKG 173

[Close]

BLAST of Carg21233-RA vs. TAIR 10
Match: AT1G67430.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 262.7 bits (670), Expect = 1.9e-70
Identity = 132/150 (88.00%), Postives = 139/150 (92.67%), Query Frame = 0


Query: 1   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 60
           NTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQAKNRHSNGQGRWP K
Sbjct: 28  NTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAK 87

Query: 61  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 120
           SA+F+LDLLKNAESNAEVKGLDVD+L +SHIQVNQA KQRRRTYRAHGRINPYMS+PCHI
Sbjct: 88  SAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHI 147

Query: 121 ELILSEKEEPVKKEPETQLATSNKSKKGQA 151
           ELILSEKEEPVKKEPETQLA   KSKK  A
Sbjct: 148 ELILSEKEEPVKKEPETQLAA--KSKKSAA 175

[Close]

BLAST of Carg21233-RA vs. TAIR 10
Match: AT1G67430.2 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 159.5 bits (402), Expect = 2.3e-39
Identity = 93/150 (62.00%), Postives = 97/150 (64.67%), Query Frame = 0


Query: 1   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 60
           NTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQAKNRHSNGQGRWP K
Sbjct: 28  NTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAK 87

Query: 61  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 120
           SA+F+LDLLKNAESNA                                            
Sbjct: 88  SAQFVLDLLKNAESNA-------------------------------------------- 131

Query: 121 ELILSEKEEPVKKEPETQLATSNKSKKGQA 151
           ELILSEKEEPVKKEPETQLA   KSKK  A
Sbjct: 148 ELILSEKEEPVKKEPETQLAA--KSKKSAA 131

The following BLAST results are available for this feature:

BLAST of Carg21233-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012735.1	9.4e-80	100.00	60S ribosomal protein L17-1, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
KAG6573648.1	8.8e-78	99.35	60S ribosomal protein L17-1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022945920.1	1.2e-77	99.36	60S ribosomal protein L17-2 [Cucurbita moschata] >XP_022966986.1 60S ribosomal p...	[more]
XP_008446047.1	5.7e-77	98.73	PREDICTED: 60S ribosomal protein L17-2 [Cucumis melo] >XP_011655562.1 60S riboso...	[more]
XP_022956721.1	4.8e-76	96.82	60S ribosomal protein L17-2-like [Cucurbita moschata] >XP_023549829.1 60S riboso...	[more]

BLAST of Carg21233-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93VI3	1.2e-69	89.19	60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1	[more]
P51413	2.7e-69	88.00	60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2	[more]
O48557	4.3e-67	90.00	60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1	[more]
P35266	4.0e-65	87.14	60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1	[more]
P35267	9.8e-64	85.00	60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1	[more]

BLAST of Carg21233-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HQT9	5.6e-78	99.36	60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111466530 PE=...	[more]
A0A6J1G2C7	5.6e-78	99.36	60S ribosomal protein L17-2 OS=Cucurbita moschata OX=3662 GN=LOC111450019 PE=3 S...	[more]
A0A5A7STA3	2.8e-77	98.73	60S ribosomal protein L17-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A0A0KPZ4	2.8e-77	98.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589950 PE=3 SV=1	[more]
A0A1S3BDN4	2.8e-77	98.73	60S ribosomal protein L17-2 OS=Cucumis melo OX=3656 GN=LOC103488896 PE=3 SV=1	[more]

BLAST of Carg21233-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27400.1	8.5e-71	89.19	Ribosomal protein L22p/L17e family protein	[more]
AT1G67430.1	1.9e-70	88.00	Ribosomal protein L22p/L17e family protein	[more]
AT1G67430.2	2.3e-39	62.00	Ribosomal protein L22p/L17e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	TIGRFAM	TIGR01038	TIGR01038	coord: 1..127 e-value: 1.5E-50 score: 169.0
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	PANTHER	PTHR11593	60S RIBOSOMAL PROTEIN L17	coord: 1..157
IPR001063	Ribosomal protein L22/L17	PFAM	PF00237	Ribosomal_L22	coord: 1..125 e-value: 3.0E-34 score: 117.4
IPR001063	Ribosomal protein L22/L17	CDD	cd00336	Ribosomal_L22	coord: 1..124 e-value: 1.71481E-30 score: 104.495
IPR036394	Ribosomal protein L22/L17 superfamily	GENE3D	3.90.470.10	Ribosomal protein L22/L17	coord: 1..156 e-value: 4.8E-64 score: 217.4
IPR036394	Ribosomal protein L22/L17 superfamily	SUPERFAMILY	54843	Ribosomal protein L22	coord: 1..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..157
None	No IPR available	PANTHER	PTHR11593:SF35	60S RIBOSOMAL PROTEIN L17-2-LIKE	coord: 1..157
IPR018260	Ribosomal protein L22/L17, conserved site	PROSITE	PS00464	RIBOSOMAL_L22	coord: 100..124

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg21233	Carg21233	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg21233-RA:1	Carg21233-RA:1	exon
Carg21233-RA:2	Carg21233-RA:2	exon
Carg21233-RA:3	Carg21233-RA:3	exon
Carg21233-RA:4	Carg21233-RA:4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg21233-RA:cds	Carg21233-RA:cds	CDS
Carg21233-RA:cds	Carg21233-RA:cds_2	CDS
Carg21233-RA:cds	Carg21233-RA:cds_3	CDS
Carg21233-RA:cds	Carg21233-RA:cds_4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg21233-RA:three_prime_utr	Carg21233-RA:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg21233-RA	Carg21233-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0002181	cytoplasmic translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome