Carg21024-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21024-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	zinc finger protein CONSTANS-LIKE 5-like
Location	Carg_Chr13: 1030635 .. 1032062 (-)
Sequence length	705
RNA-Seq Expression	Carg21024-RA
Synteny	Carg21024-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACGCCTTCTCCTCCGCCACCCTCGAAGCCTCTCTTTGCCACCTCCCTGCCCCCGACCTCGCCATGTCGCCACCACTTCTTGCATCCTTCCCTCATTTCATATCTTCCCACTCCTCCTCCTTCTCCTCGCTCCTCGCGAGCGACCTGGTCCCGATGCTAGAGTCACCGGGGCTCTTACCCTCAGAGCTCAGTTATAGTTGTAGTAGTGGACCTTGTAGTAGCTACGGGTCTCCGACATCAAAACCTCAACGGAGTATGAGACACAGACCAAACGTTCAGATTTCAACGTTGTTTGACTTAGAAAGTTCCGTGAGAAGGGCTTACAGCTTCAATGATTTGCAGGTGAGTTATATGCCTCATATTTATTAGCAAATATAATCCATTTGGATTAGGTTCATTCTTTAATAAGTCAAATCTAAAAAATATTTCAATTCAACTCAACCCAACCTAACCCACGAGATGACAGGGAAGAACAGAAATGGCAAGCTCGAGTGAAAGCAGTTTGATAATAGAAGGAATGAGTACCAAAGCATGTCGGTATAGCCCCGAAGAAAAAAGACAAAGAATCGAGAAGTATAAAACCAAGAGAAATCAGAGGAATTTTAATAAGAAAATTAAGGTATTTATCTTTTTTAATTAATTATCAAAAAGAAAAAAAAAAATATTTTGTACATGAACATAATTTAGAAAAAGAAGAACCCACGAGAAAATTCATTTAAATAATTGTAAAATATTGGTGGAGTTAAAAATGATTGTGGATAGGATTACTATTCATATGTAGCTACCACCAGTGTTCTTTATTTTTCTTTTTTTTTTCTTTTTTAATAAAGTTGTTTAAAAAACTAAAATACTTTACAATTTTTTTTATTTAATTATAATTTCAATCTCTCGAGAACATGTTTGTGTCGTTAATGAACTTTAAAATAATCTAATCTGTATCTTATATGTGAGATCTCACATCGGTTGGAGAGAGTCTTATAAGGGTATGAAAATCTCTCCATAATAGACGTGTTTTAAAATCGTGAGTTGATAGCGATATGTAACAGGATAAAACAGACAATATCTACTGGCGGTGGGCTGAAAGCTGTTATATTATAAGGCCGTTAATTTTCGTGTTTTGTTTTTTTATTATATTATATTACATTATCTCTAGTTAGTTCAATTATGGGTTGAAAAATGATCAGTTGTTAATTCATTGAATGCTCGGGAGTTTGGTAGTATGAATGCAGGAAGACATTGGCGGATAGTAGAAGGCGAATAAGAGGGAGGTTTGCGAGAAATGAAGAAGTTGAGAATAGTAACTCGACCAGCTCGCCGACAGAGACATGGAGCTGCTACGACAATGCCACGGCGGAGGAAGTCGGCCAAGACGATGGCTCATGGATCACCTTTCTTGATTCCTACTCGGTTAATTTTATTCCTTGA

mRNA sequence

ATGCACGCCTTCTCCTCCGCCACCCTCGAAGCCTCTCTTTGCCACCTCCCTGCCCCCGACCTCGCCATGTCGCCACCACTTCTTGCATCCTTCCCTCATTTCATATCTTCCCACTCCTCCTCCTTCTCCTCGCTCCTCGCGAGCGACCTGGTCCCGATGCTAGAGTCACCGGGGCTCTTACCCTCAGAGCTCAGTTATAGTTGTAGTAGTGGACCTTGTAGTAGCTACGGGTCTCCGACATCAAAACCTCAACGGAGTATGAGACACAGACCAAACGTTCAGATTTCAACGTTGTTTGACTTAGAAAGTTCCGTGAGAAGGGCTTACAGCTTCAATGATTTGCAGGGAAGAACAGAAATGGCAAGCTCGAGTGAAAGCAGTTTGATAATAGAAGGAATGAGTACCAAAGCATGTCGGTATAGCCCCGAAGAAAAAAGACAAAGAATCGAGAAGTATAAAACCAAGAGAAATCAGAGGAATTTTAATAAGAAAATTAAGTATGAATGCAGGAAGACATTGGCGGATAGTAGAAGGCGAATAAGAGGGAGGTTTGCGAGAAATGAAGAAGTTGAGAATAGTAACTCGACCAGCTCGCCGACAGAGACATGGAGCTGCTACGACAATGCCACGGCGGAGGAAGTCGGCCAAGACGATGGCTCATGGATCACCTTTCTTGATTCCTACTCGGTTAATTTTATTCCTTGA

Coding sequence (CDS)

ATGCACGCCTTCTCCTCCGCCACCCTCGAAGCCTCTCTTTGCCACCTCCCTGCCCCCGACCTCGCCATGTCGCCACCACTTCTTGCATCCTTCCCTCATTTCATATCTTCCCACTCCTCCTCCTTCTCCTCGCTCCTCGCGAGCGACCTGGTCCCGATGCTAGAGTCACCGGGGCTCTTACCCTCAGAGCTCAGTTATAGTTGTAGTAGTGGACCTTGTAGTAGCTACGGGTCTCCGACATCAAAACCTCAACGGAGTATGAGACACAGACCAAACGTTCAGATTTCAACGTTGTTTGACTTAGAAAGTTCCGTGAGAAGGGCTTACAGCTTCAATGATTTGCAGGGAAGAACAGAAATGGCAAGCTCGAGTGAAAGCAGTTTGATAATAGAAGGAATGAGTACCAAAGCATGTCGGTATAGCCCCGAAGAAAAAAGACAAAGAATCGAGAAGTATAAAACCAAGAGAAATCAGAGGAATTTTAATAAGAAAATTAAGTATGAATGCAGGAAGACATTGGCGGATAGTAGAAGGCGAATAAGAGGGAGGTTTGCGAGAAATGAAGAAGTTGAGAATAGTAACTCGACCAGCTCGCCGACAGAGACATGGAGCTGCTACGACAATGCCACGGCGGAGGAAGTCGGCCAAGACGATGGCTCATGGATCACCTTTCTTGATTCCTACTCGGTTAATTTTATTCCTTGA

Protein sequence

MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASDLVPMLESPGLLPSELSYSCSSGPCSSYGSPTSKPQRSMRHRPNVQISTLFDLESSVRRAYSFNDLQGRTEMASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRRRIRGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQDDGSWITFLDSYSVNFIP

Homology

[Close]

BLAST of Carg21024-RA vs. NCBI nr
Match: KAG7019213.1 (Zinc finger protein CONSTANS-LIKE 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 450.3 bits (1157), Expect = 1.0e-122
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASDLVPMLESPGLL 60
           MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASDLVPMLESPGLL
Sbjct: 1   MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASDLVPMLESPGLL 60

Query: 61  PSELSYSCSSGPCSSYGSPTSKPQRSMRHRPNVQISTLFDLESSVRRAYSFNDLQGRTEM 120
           PSELSYSCSSGPCSSYGSPTSKPQRSMRHRPNVQISTLFDLESSVRRAYSFNDLQGRTEM
Sbjct: 61  PSELSYSCSSGPCSSYGSPTSKPQRSMRHRPNVQISTLFDLESSVRRAYSFNDLQGRTEM 120

Query: 121 ASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRRRI 180
           ASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRRRI
Sbjct: 121 ASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRRRI 180

Query: 181 RGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQDDGSWITFLDSYSVNFIP 235
           RGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQDDGSWITFLDSYSVNFIP
Sbjct: 181 RGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQDDGSWITFLDSYSVNFIP 234

[Close]

BLAST of Carg21024-RA vs. NCBI nr
Match: XP_022964840.1 (zinc finger protein CONSTANS-LIKE 5-like [Cucurbita moschata])

HSP 1 Score: 441.0 bits (1133), Expect = 6.2e-120
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0


Query: 1   MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASDLVPMLESPGLL 60
           MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASDLVPMLESPGLL
Sbjct: 1   MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASDLVPMLESPGLL 60

Query: 61  PSELSYSCSSGPCSSYGSPTSKPQRSMRHRPNVQISTLFDLESSVRRAYSFNDLQGRTEM 120
           PSELSYSCSSGPCSSYGSPTSKPQRSMRHRPNVQISTLFDLESSVRRAYSFNDLQGRTEM
Sbjct: 61  PSELSYSCSSGPCSSYGSPTSKPQRSMRHRPNVQISTLFDLESSVRRAYSFNDLQGRTEM 120

Query: 121 ASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRRRI 180
           ASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRRRI
Sbjct: 121 ASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRRRI 180

Query: 181 RGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQDDGSWITFLDSYSV 231
           RGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQDDGSWITFLDSYSV
Sbjct: 181 RGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQDDGSWITFLDSYSV 230

[Close]

BLAST of Carg21024-RA vs. NCBI nr
Match: XP_022970463.1 (zinc finger protein CONSTANS-LIKE 5-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 401.4 bits (1030), Expect = 5.5e-108
Identity = 212/234 (90.60%), Postives = 216/234 (92.31%), Query Frame = 0


Query: 1   MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASDLVPMLESPGLL 60
           MHAFSSATLEASLCHLP PDLA+SPPLLASFPHFISSH    SSLLAS+L PMLE  GLL
Sbjct: 1   MHAFSSATLEASLCHLPTPDLAVSPPLLASFPHFISSH----SSLLASELAPMLEPSGLL 60

Query: 61  PSELSYSCSSGPCSSYGSPTSKPQRSMRHRPNVQISTLFDLESSVRRAYSFNDLQGRTEM 120
           PSELSYSCSSGPCSSY SPTSKPQRSM H P VQIS LFDLESSVRRAY  NDLQGRTEM
Sbjct: 61  PSELSYSCSSGPCSSYESPTSKPQRSMSHGPGVQISMLFDLESSVRRAYRSNDLQGRTEM 120

Query: 121 ASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRRRI 180
            +S+ESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRRRI
Sbjct: 121 TNSNESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRRRI 180

Query: 181 RGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQDDGSWITFLDSYSVNFIP 235
           RGRFARNEEVENSNSTSSPTETWSCYDNAT EE GQDDGSWITFLDSYSVNFIP
Sbjct: 181 RGRFARNEEVENSNSTSSPTETWSCYDNATTEEDGQDDGSWITFLDSYSVNFIP 230

[Close]

BLAST of Carg21024-RA vs. NCBI nr
Match: KAG6583456.1 (hypothetical protein SDJN03_19388, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 335.9 bits (860), Expect = 2.8e-88
Identity = 183/234 (78.21%), Postives = 183/234 (78.21%), Query Frame = 0


Query: 1   MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASDLVPMLESPGLL 60
           MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASDLVPMLESPGLL
Sbjct: 1   MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASDLVPMLESPGLL 60

Query: 61  PSELSYSCSSGPCSSYGSPTSKPQRSMRHRPNVQISTLFDLESSVRRAYSFNDLQGRTEM 120
           PSELSYSCSSGPCSSYGSPTSKPQRSMRHRPNVQISTLFDLESSVRRAYSFNDLQ     
Sbjct: 61  PSELSYSCSSGPCSSYGSPTSKPQRSMRHRPNVQISTLFDLESSVRRAYSFNDLQ----- 120

Query: 121 ASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRRRI 180
                                                         YECRKTLADSRRRI
Sbjct: 121 ----------------------------------------------YECRKTLADSRRRI 180

Query: 181 RGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQDDGSWITFLDSYSVNFIP 235
           RGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQDDGSWITFLDSYSVNFIP
Sbjct: 181 RGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQDDGSWITFLDSYSVNFIP 183

[Close]

BLAST of Carg21024-RA vs. NCBI nr
Match: XP_038895146.1 (zinc finger protein CONSTANS-LIKE 5-like [Benincasa hispida])

HSP 1 Score: 292.0 bits (746), Expect = 4.7e-75
Identity = 176/254 (69.29%), Postives = 192/254 (75.59%), Query Frame = 0


Query: 1   MHAFSSA----TLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLL-----ASDLV 60
           MH FS+     T +ASLCHL +PD A+SPPL  SFP+F SSH+SS SSLL      S+L 
Sbjct: 1   MHTFSTVTGTITADASLCHLHSPDHAVSPPLFPSFPNFFSSHTSS-SSLLPTYSQLSELD 60

Query: 61  PMLESPGLLPSELSYSCSSGPCSSYGSPTSKP---QRSM----------RHRPNVQISTL 120
            +LES G LPSE+SYS SSGPCSSYGSPTS+P    RSM           H P  + S+L
Sbjct: 61  LVLESSGFLPSEVSYSGSSGPCSSYGSPTSQPALIHRSMSSHSLQKNRVSHGPGARSSSL 120

Query: 121 FDLES-SVRRAYSFNDLQGRTEMASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRN 180
           FD +  +VRR YS  DLQGRTE   SSESSLIIE M TKACRYSPEEKR+RIE+YKTKRN
Sbjct: 121 FDADGPAVRRVYSSGDLQGRTERGCSSESSLIIERM-TKACRYSPEEKRERIERYKTKRN 180

Query: 181 QRNFNKKIKYECRKTLADSRRRIRGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQD 232
           QRNFNKKIKYECRKTLADSRRRIRGRFARNEE ENSNSTSSP ETWS YDNA  EE  QD
Sbjct: 181 QRNFNKKIKYECRKTLADSRRRIRGRFARNEETENSNSTSSPVETWSYYDNAMVEEDTQD 240

[Close]

BLAST of Carg21024-RA vs. ExPASy TrEMBL
Match: A0A6J1HLZ0 (zinc finger protein CONSTANS-LIKE 5-like OS=Cucurbita moschata OX=3662 GN=LOC111464822 PE=4 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 3.0e-120
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0


Query: 1   MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASDLVPMLESPGLL 60
           MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASDLVPMLESPGLL
Sbjct: 1   MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASDLVPMLESPGLL 60

Query: 61  PSELSYSCSSGPCSSYGSPTSKPQRSMRHRPNVQISTLFDLESSVRRAYSFNDLQGRTEM 120
           PSELSYSCSSGPCSSYGSPTSKPQRSMRHRPNVQISTLFDLESSVRRAYSFNDLQGRTEM
Sbjct: 61  PSELSYSCSSGPCSSYGSPTSKPQRSMRHRPNVQISTLFDLESSVRRAYSFNDLQGRTEM 120

Query: 121 ASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRRRI 180
           ASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRRRI
Sbjct: 121 ASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRRRI 180

Query: 181 RGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQDDGSWITFLDSYSV 231
           RGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQDDGSWITFLDSYSV
Sbjct: 181 RGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQDDGSWITFLDSYSV 230

[Close]

BLAST of Carg21024-RA vs. ExPASy TrEMBL
Match: A0A6J1I3X3 (zinc finger protein CONSTANS-LIKE 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469436 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.7e-108
Identity = 212/234 (90.60%), Postives = 216/234 (92.31%), Query Frame = 0


Query: 1   MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASDLVPMLESPGLL 60
           MHAFSSATLEASLCHLP PDLA+SPPLLASFPHFISSH    SSLLAS+L PMLE  GLL
Sbjct: 1   MHAFSSATLEASLCHLPTPDLAVSPPLLASFPHFISSH----SSLLASELAPMLEPSGLL 60

Query: 61  PSELSYSCSSGPCSSYGSPTSKPQRSMRHRPNVQISTLFDLESSVRRAYSFNDLQGRTEM 120
           PSELSYSCSSGPCSSY SPTSKPQRSM H P VQIS LFDLESSVRRAY  NDLQGRTEM
Sbjct: 61  PSELSYSCSSGPCSSYESPTSKPQRSMSHGPGVQISMLFDLESSVRRAYRSNDLQGRTEM 120

Query: 121 ASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRRRI 180
            +S+ESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRRRI
Sbjct: 121 TNSNESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRRRI 180

Query: 181 RGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQDDGSWITFLDSYSVNFIP 235
           RGRFARNEEVENSNSTSSPTETWSCYDNAT EE GQDDGSWITFLDSYSVNFIP
Sbjct: 181 RGRFARNEEVENSNSTSSPTETWSCYDNATTEEDGQDDGSWITFLDSYSVNFIP 230

[Close]

BLAST of Carg21024-RA vs. ExPASy TrEMBL
Match: A0A6J1I5K4 (uncharacterized protein LOC111469436 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469436 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 6.6e-75
Identity = 164/234 (70.09%), Postives = 166/234 (70.94%), Query Frame = 0


Query: 1   MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASDLVPMLESPGLL 60
           MHAFSSATLEASLCHLP PDLA+SPPLLASFPHFISSH    SSLLAS+L PMLE  GLL
Sbjct: 1   MHAFSSATLEASLCHLPTPDLAVSPPLLASFPHFISSH----SSLLASELAPMLEPSGLL 60

Query: 61  PSELSYSCSSGPCSSYGSPTSKPQRSMRHRPNVQISTLFDLESSVRRAYSFNDLQGRTEM 120
           PSELSYSCSSGPCSSY SPTSKPQRSM H P VQIS LFDLESSVRRAY  NDLQ     
Sbjct: 61  PSELSYSCSSGPCSSYESPTSKPQRSMSHGPGVQISMLFDLESSVRRAYRSNDLQ----- 120

Query: 121 ASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRRRI 180
                                                         YECRKTLADSRRRI
Sbjct: 121 ----------------------------------------------YECRKTLADSRRRI 179

Query: 181 RGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQDDGSWITFLDSYSVNFIP 235
           RGRFARNEEVENSNSTSSPTETWSCYDNAT EE GQDDGSWITFLDSYSVNFIP
Sbjct: 181 RGRFARNEEVENSNSTSSPTETWSCYDNATTEEDGQDDGSWITFLDSYSVNFIP 179

[Close]

BLAST of Carg21024-RA vs. ExPASy TrEMBL
Match: A0A0A0LUR6 (CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G497300 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 2.3e-72
Identity = 172/248 (69.35%), Postives = 189/248 (76.21%), Query Frame = 0


Query: 1   MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASD---LVPMLESP 60
           MH+FS A ++ S+ HL +PDL +SPPL  SFP+F SSHSSSF  LLA     L P+LESP
Sbjct: 1   MHSFSPA-VDTSIFHLHSPDLIVSPPLFPSFPNFSSSHSSSF--LLAYSQLALNPVLESP 60

Query: 61  GLLPSE-LSYSCSSGPCSSYGSPTSKP----QRSM----------RHRPNVQISTLFDLE 120
            LLPSE +SYS SSGPCSSYGSPTS      QRSM          RH P  +IS+L D +
Sbjct: 61  ELLPSEVISYSGSSGPCSSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARISSLIDTD 120

Query: 121 -SSVRRAYSFNDLQGRTEMASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNF 180
             +VRR YS  DLQGRTE   SSESSLIIEGM TKACRYSPEEKR+RIE+YKTKRNQRNF
Sbjct: 121 MPAVRRVYSSGDLQGRTERGCSSESSLIIEGM-TKACRYSPEEKRERIERYKTKRNQRNF 180

Query: 181 NKKIKYECRKTLADSRRRIRGRFARNEEVENSNSTSSPTETWSCYDNATAEE-VGQDDGS 229
           NKKIKYECRKTLADSRRRIRGRFARNEE+EN NSTSSP E WSCY+N   EE   QDDGS
Sbjct: 181 NKKIKYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEEDTVQDDGS 240

[Close]

BLAST of Carg21024-RA vs. ExPASy TrEMBL
Match: A0A1S3C703 (zinc finger protein CONSTANS-LIKE 3-like OS=Cucumis melo OX=3656 GN=LOC103497191 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 3.7e-70
Identity = 170/251 (67.73%), Postives = 190/251 (75.70%), Query Frame = 0


Query: 1   MHAFSSATLEASLCHLPAPDL--AMSPPLLASFPHFISSHSSSF---SSLLASDLVPMLE 60
           MH+FS A ++ S+ HL +PDL  + SPPL  SFP+F SSHSSSF    S LA D  P+LE
Sbjct: 1   MHSFSPA-VDTSIFHLHSPDLIVSSSPPLFPSFPNFSSSHSSSFLLAYSQLALD--PVLE 60

Query: 61  SPGLLPSE-LSYSCSSGPCSSYGSPTSKP----QRSM----------RHRPNVQISTLFD 120
           SP LLP E +SYS SSGPCSSYGSPTS      QRSM          RH P  +IS+L D
Sbjct: 61  SPDLLPLEVISYSGSSGPCSSYGSPTSSQPALIQRSMSSQSLQKDRVRHGPGARISSLID 120

Query: 121 LE-SSVRRAYSFNDLQGRTEMASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQR 180
            +  +VRR YS  DLQGRTE   SSESSLIIEGM TKACRYSPEEK++RIE+YK+KRNQR
Sbjct: 121 TDMPAVRRVYSSGDLQGRTERGCSSESSLIIEGM-TKACRYSPEEKKERIERYKSKRNQR 180

Query: 181 NFNKKIKYECRKTLADSRRRIRGRFARNEEVENSNSTSSPTETWSCYDNATAEEVG--QD 229
           NFNKKIKYECRKTLADSRRRIRGRFARNEE+ENSNSTSSP E WSCYDN   +E+   QD
Sbjct: 181 NFNKKIKYECRKTLADSRRRIRGRFARNEEIENSNSTSSPLEAWSCYDNPMVKELDTTQD 240

[Close]

BLAST of Carg21024-RA vs. TAIR 10
Match: AT5G59990.1 (CCT motif family protein )

HSP 1 Score: 107.1 bits (266), Expect = 2.0e-23
Identity = 95/234 (40.60%), Postives = 121/234 (51.71%), Query Frame = 0


Query: 14  CHLPAPDLAMSPPLLASFPHF-----ISSHSSSFSSLLASDLVPMLE--SPGLLPSELSY 73
           C L + D+   P LL    H      ++    S +SL A++ V        G+     S 
Sbjct: 17  CFLYSDDIVAPPQLLDHHHHQFPPPPLALLMMSQNSLYAAEAVSGFGYFDSGMNGGGGSS 76

Query: 74  SCSSGPCSSYGSPTSKPQRSMRHR----PNVQISTLF--DLESSVRRAYSFNDLQGRTEM 133
           SC S      G  +   QRS+        N   +  F  D +  VRRA S  DL   +  
Sbjct: 77  SCDSPSSMGSGGESLVMQRSVSSHNGFSGNYTAAHDFVNDDDGPVRRALSAGDLPRSSRR 136

Query: 134 ASS---SESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSR 193
            SS   SES+ IIEGMS KA +YSPEEK+++IEKY++KRN RNFNK+IKYECRKTLADSR
Sbjct: 137 ESSTVWSESNAIIEGMS-KAYKYSPEEKKEKIEKYRSKRNLRNFNKRIKYECRKTLADSR 196

Query: 194 RRIRGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQDDGSWITFLDSYSVN 232
            RIRGRFARN+E+                     E V  D  +W +FLDS+S N
Sbjct: 197 PRIRGRFARNDEISQQEQVD------------VMEAVVGDVDTWASFLDSFSAN 237

[Close]

BLAST of Carg21024-RA vs. TAIR 10
Match: AT5G41380.1 (CCT motif family protein )

HSP 1 Score: 95.9 bits (237), Expect = 4.6e-20
Identity = 59/104 (56.73%), Postives = 70/104 (67.31%), Query Frame = 0


Query: 103 SSVRRAYSFNDLQGRTEMASSSESSLI--IEGMSTKACRYSPEEKRQRIEKYKTKRNQRN 162
           S +RR YS  DLQ   EM  SSE+S +   E  + K  RYS EE++++I KY+ KRNQRN
Sbjct: 171 SQMRRVYSTGDLQNNMEMQRSSENSTMPFSEEQNFKVGRYSAEERKEKISKYRAKRNQRN 230

Query: 163 FNKKIKYECRKTLADSRRRIRGRFARNEE-VENSNSTSSPTETW 204
           F K IKY CRKTLADSR RIRGRFARN+E VE  N     +E W
Sbjct: 231 FTKTIKYACRKTLADSRPRIRGRFARNDEVVEIPNIEDDDSELW 274

[Close]

BLAST of Carg21024-RA vs. TAIR 10
Match: AT1G63820.1 (CCT motif family protein )

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-13
Identity = 70/200 (35.00%), Postives = 98/200 (49.00%), Query Frame = 0


Query: 21  LAMSPPLLASFPHFISSHSSSFSSLLASDLVPMLESPGLLPSELSYSCSSGPCSSYGSPT 80
           L+ SPP ++       +H++SF +    +    +++  LL               + SP 
Sbjct: 67  LSSSPP-ISQLQTLTLTHTNSFPNFSGFENFDTVKTEQLL---------------FNSPF 126

Query: 81  SKPQRSMRHRPNVQISTLFD------LESSVRRAYSFNDLQ--GR---------TEMASS 140
             P   M    N Q   L +          +RR YS  DLQ  GR         + +A+ 
Sbjct: 127 DAP--FMEDSSNFQNQNLLNSPEDSFFSDHMRRVYSTGDLQNLGRDFTGQRSYSSPLAAE 186

Query: 141 SESSLIIEG--MSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRRRIR 200
           S  + +  G   S +  RYS EE++++I KY+ KR QRNF K IKY CRKTLAD+R R+R
Sbjct: 187 SSPTTVFSGDEQSLRVGRYSSEERKEKISKYRAKRTQRNFTKTIKYACRKTLADNRPRVR 246

[Close]

BLAST of Carg21024-RA vs. TAIR 10
Match: AT2G33350.1 (CCT motif family protein )

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-12
Identity = 73/227 (32.16%), Postives = 108/227 (47.58%), Query Frame = 0


Query: 11  ASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASDLVPMLESPGLLPSELSYSCSS 70
           +SL   P          L+S P +    + S S   +S L P   S GLL +E +     
Sbjct: 165 SSLAPPPLQSGVFEEDCLSSVPSYNLGLNPSCSFFRSSGL-PAYMSTGLLSAESNLGYLP 224

Query: 71  GPCSSYGSPTSKPQRSMRHRPNVQIST---LFDLESSVRRAYSFNDLQGRTEMASSSESS 130
           G     GS  +KP     H P +        F    S++R ++  DLQ      + ++S 
Sbjct: 225 GNI-HVGSEINKP-----HDPLMDFQADNGGFFCPDSIKRMFNPEDLQKALGGGAENQSH 284

Query: 131 LI------------IEGMS----TKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRK 190
           L+            I G+      K  + SPE+++++I +Y  KRN+RNFNKKIKY CRK
Sbjct: 285 LVTPQAHPALGPVDINGLEDSTLNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRK 344

Query: 191 TLADSRRRIRGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQDD 219
           TLADSR R+RGRFA+N+E    N  +      S +D+   +++G  D
Sbjct: 345 TLADSRPRVRGRFAKNDEFGEPNRQAFS----SHHDDEDEDDMGVKD 380

[Close]

BLAST of Carg21024-RA vs. TAIR 10
Match: AT2G33350.2 (CCT motif family protein )

HSP 1 Score: 69.3 bits (168), Expect = 4.6e-12
Identity = 73/226 (32.30%), Postives = 106/226 (46.90%), Query Frame = 0


Query: 11  ASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASDLVPMLESPGLLPSELSYSCSS 70
           +SL   P          L+S P +    + S S   +S L P   S GLL +E +     
Sbjct: 165 SSLAPPPLQSGVFEEDCLSSVPSYNLGLNPSCSFFRSSGL-PAYMSTGLLSAESNLGYLP 224

Query: 71  GPCSSYGSPTSKPQRSMRHRPNVQIST---LFDLESSVRRAYSFNDLQGR---------- 130
           G     GS  +KP     H P +        F    S++R ++  DLQ            
Sbjct: 225 GNI-HVGSEINKP-----HDPLMDFQADNGGFFCPDSIKRMFNPEDLQALGGGAENQSHL 284

Query: 131 -TEMASSSESSLIIEGMS----TKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKT 190
            T  A  +   + I G+      K  + SPE+++++I +Y  KRN+RNFNKKIKY CRKT
Sbjct: 285 VTPQAHPALGPVDINGLEDSTLNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKT 344

Query: 191 LADSRRRIRGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQDD 219
           LADSR R+RGRFA+N+E    N  +      S +D+   +++G  D
Sbjct: 345 LADSRPRVRGRFAKNDEFGEPNRQAFS----SHHDDEDEDDMGVKD 379

The following BLAST results are available for this feature:

BLAST of Carg21024-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019213.1	1.0e-122	100.00	Zinc finger protein CONSTANS-LIKE 5, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_022964840.1	6.2e-120	100.00	zinc finger protein CONSTANS-LIKE 5-like [Cucurbita moschata]	[more]
XP_022970463.1	5.5e-108	90.60	zinc finger protein CONSTANS-LIKE 5-like isoform X1 [Cucurbita maxima]	[more]
KAG6583456.1	2.8e-88	78.21	hypothetical protein SDJN03_19388, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038895146.1	4.7e-75	69.29	zinc finger protein CONSTANS-LIKE 5-like [Benincasa hispida]	[more]

BLAST of Carg21024-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg21024-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HLZ0	3.0e-120	100.00	zinc finger protein CONSTANS-LIKE 5-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1I3X3	2.7e-108	90.60	zinc finger protein CONSTANS-LIKE 5-like isoform X1 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1I5K4	6.6e-75	70.09	uncharacterized protein LOC111469436 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0LUR6	2.3e-72	69.35	CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G497300 PE=4 SV...	[more]
A0A1S3C703	3.7e-70	67.73	zinc finger protein CONSTANS-LIKE 3-like OS=Cucumis melo OX=3656 GN=LOC103497191...	[more]

BLAST of Carg21024-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59990.1	2.0e-23	40.60	CCT motif family protein	[more]
AT5G41380.1	4.6e-20	56.73	CCT motif family protein	[more]
AT1G63820.1	1.1e-13	35.00	CCT motif family protein	[more]
AT2G33350.1	1.2e-12	32.16	CCT motif family protein	[more]
AT2G33350.2	4.6e-12	32.30	CCT motif family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 146..187 e-value: 3.7E-16 score: 58.9
IPR010402	CCT domain	PROSITE	PS51017	CCT	coord: 145..187 score: 14.584383
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..203
None	No IPR available	PANTHER	PTHR31319	ZINC FINGER PROTEIN CONSTANS-LIKE 4	coord: 94..229
None	No IPR available	PANTHER	PTHR31319:SF73	CCT MOTIF FAMILY PROTEIN	coord: 94..229

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg21024	Carg21024	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg21024-RA:1	Carg21024-RA:1	exon
Carg21024-RA:2	Carg21024-RA:2	exon
Carg21024-RA:3	Carg21024-RA:3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg21024-RA:cds	Carg21024-RA:cds_3	CDS
Carg21024-RA:cds	Carg21024-RA:cds_2	CDS
Carg21024-RA:cds	Carg21024-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg21024-RA	Carg21024-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009909	regulation of flower development
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding