Carg21022-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCTCCGGCTGCATATCCGAATGCATCAACGACGCCTGTATTATCCCCGCCGGCCGGCCGACGTATTTCAGCTTGCAGCGGTGGCCGGAGGAGGAGGATGGGTCTGTAGAGCCCCGTCGGCCACGGGTGAGAGCGGCGGACGGGATCTCTCGCCGGCAAATGTACTTGAGAAGCTACACCTTCTGCAGGGAGGACACCGTCGTCCATGAGAGTACAGCACAGACCTGCCTTGGGAAGCTCAAGTGGCGACGGAGGCCGGCAGAGATCCGCGGCGGCGGAAGGAGGAGCTGCTGTTTCGCCATCGTGAGGGCCGCCGCTGCGAAGGCTTCTTCCGGCGCCTTGCTCTCCATGTTCCGGCGGTTGCTTTCTTGCGTGGCGAAAGTTGACGGTCGTAAGTGA ATGGCCTCCGGCTGCATATCCGAATGCATCAACGACGCCTGTATTATCCCCGCCGGCCGGCCGACGTATTTCAGCTTGCAGCGGTGGCCGGAGGAGGAGGATGGGTCTGTAGAGCCCCGTCGGCCACGGGTGAGAGCGGCGGACGGGATCTCTCGCCGGCAAATGTACTTGAGAAGCTACACCTTCTGCAGGGAGGACACCGTCGTCCATGAGAGTACAGCACAGACCTGCCTTGGGAAGCTCAAGTGGCGACGGAGGCCGGCAGAGATCCGCGGCGGCGGAAGGAGGAGCTGCTGTTTCGCCATCGTGAGGGCCGCCGCTGCGAAGGCTTCTTCCGGCGCCTTGCTCTCCATGTTCCGGCGGTTGCTTTCTTGCGTGGCGAAAGTTGACGGTCGTAAGTGA ATGGCCTCCGGCTGCATATCCGAATGCATCAACGACGCCTGTATTATCCCCGCCGGCCGGCCGACGTATTTCAGCTTGCAGCGGTGGCCGGAGGAGGAGGATGGGTCTGTAGAGCCCCGTCGGCCACGGGTGAGAGCGGCGGACGGGATCTCTCGCCGGCAAATGTACTTGAGAAGCTACACCTTCTGCAGGGAGGACACCGTCGTCCATGAGAGTACAGCACAGACCTGCCTTGGGAAGCTCAAGTGGCGACGGAGGCCGGCAGAGATCCGCGGCGGCGGAAGGAGGAGCTGCTGTTTCGCCATCGTGAGGGCCGCCGCTGCGAAGGCTTCTTCCGGCGCCTTGCTCTCCATGTTCCGGCGGTTGCTTTCTTGCGTGGCGAAAGTTGACGGTCGTAAGTGA MASGCISECINDACIIPAGRPTYFSLQRWPEEEDGSVEPRRPRVRAADGISRRQMYLRSYTFCREDTVVHESTAQTCLGKLKWRRRPAEIRGGGRRSCCFAIVRAAAAKASSGALLSMFRRLLSCVAKVDGRK Homology
BLAST of Carg21022-RA vs. NCBI nr
Match: KAG6583454.1 (hypothetical protein SDJN03_19386, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019211.1 hypothetical protein SDJN02_18169, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 272.7 bits (696), Expect = 1.7e-69 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
BLAST of Carg21022-RA vs. NCBI nr
Match: XP_022964754.1 (uncharacterized protein LOC111464745 [Cucurbita moschata]) HSP 1 Score: 264.6 bits (675), Expect = 4.5e-67 Identity = 131/133 (98.50%), Postives = 131/133 (98.50%), Query Frame = 0
BLAST of Carg21022-RA vs. NCBI nr
Match: XP_023519361.1 (uncharacterized protein LOC111782795 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 250.4 bits (638), Expect = 8.9e-63 Identity = 126/133 (94.74%), Postives = 127/133 (95.49%), Query Frame = 0
BLAST of Carg21022-RA vs. NCBI nr
Match: XP_022970388.1 (uncharacterized protein LOC111469389 [Cucurbita maxima]) HSP 1 Score: 250.0 bits (637), Expect = 1.2e-62 Identity = 126/133 (94.74%), Postives = 127/133 (95.49%), Query Frame = 0
BLAST of Carg21022-RA vs. NCBI nr
Match: XP_008457578.1 (PREDICTED: uncharacterized protein LOC103497245 [Cucumis melo] >KAA0033875.1 uncharacterized protein E6C27_scaffold43059G00600 [Cucumis melo var. makuwa] >TYK01259.1 uncharacterized protein E5676_scaffold49G00460 [Cucumis melo var. makuwa]) HSP 1 Score: 185.7 bits (470), Expect = 2.7e-43 Identity = 95/133 (71.43%), Postives = 109/133 (81.95%), Query Frame = 0
BLAST of Carg21022-RA vs. ExPASy TrEMBL
Match: A0A6J1HP59 (uncharacterized protein LOC111464745 OS=Cucurbita moschata OX=3662 GN=LOC111464745 PE=4 SV=1) HSP 1 Score: 264.6 bits (675), Expect = 2.2e-67 Identity = 131/133 (98.50%), Postives = 131/133 (98.50%), Query Frame = 0
BLAST of Carg21022-RA vs. ExPASy TrEMBL
Match: A0A6J1I3Q2 (uncharacterized protein LOC111469389 OS=Cucurbita maxima OX=3661 GN=LOC111469389 PE=4 SV=1) HSP 1 Score: 250.0 bits (637), Expect = 5.6e-63 Identity = 126/133 (94.74%), Postives = 127/133 (95.49%), Query Frame = 0
BLAST of Carg21022-RA vs. ExPASy TrEMBL
Match: A0A5A7SXG3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00460 PE=4 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 1.3e-43 Identity = 95/133 (71.43%), Postives = 109/133 (81.95%), Query Frame = 0
BLAST of Carg21022-RA vs. ExPASy TrEMBL
Match: A0A0A0LXY3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G497810 PE=4 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 1.3e-43 Identity = 95/134 (70.90%), Postives = 109/134 (81.34%), Query Frame = 0
BLAST of Carg21022-RA vs. ExPASy TrEMBL
Match: A0A1S3C748 (uncharacterized protein LOC103497245 OS=Cucumis melo OX=3656 GN=LOC103497245 PE=4 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 1.3e-43 Identity = 95/133 (71.43%), Postives = 109/133 (81.95%), Query Frame = 0
BLAST of Carg21022-RA vs. TAIR 10
Match: AT5G02640.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46300.1); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 76.6 bits (187), Expect = 1.6e-14 Identity = 60/156 (38.46%), Postives = 74/156 (47.44%), Query Frame = 0
BLAST of Carg21022-RA vs. TAIR 10
Match: AT3G46300.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46310.1); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 52.0 bits (123), Expect = 4.3e-07 Identity = 44/138 (31.88%), Postives = 61/138 (44.20%), Query Frame = 0
BLAST of Carg21022-RA vs. TAIR 10
Match: AT3G46310.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46300.1); Has 35 Blast hits to 35 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 50.4 bits (119), Expect = 1.3e-06 Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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