Carg20528-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20528-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Histone H3
Location	Carg_Chr12: 890629 .. 891817 (-)
Sequence length	546
RNA-Seq Expression	Carg20528-RA
Synteny	Carg20528-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATCATATCCATCCGCTCGGACGGGGAGCGCCGTCCTATATAAAGCGCTTAATTCATTTGCTTTCGAATTAAATCCCAATCTATTCGAGCTCCTCAATTCTCTCTCGGTTCTCAAGCGCCTCTTCGCCGTCCAGGTTAGCTTCTCTTCGCCTCCTTAATCTTCCTTTTCTTTTCTTGCAATTGCTTGGTATGATCACTTTCGATGTGTTCTGGTTTTCTGCTCAAATTCTTTCTAATAGATTATAATTGATGATTAGCTTTACTTTCTGGAGTCGATTTGGTATGACTACTTCTTTTGAAACCTAAACATAATAATCGAAGAATTCGTCCAAAGTTTTCTGAAGGAGTAGGAAGAAGTAGGTTAAATCTATTAGTTGCCTCGAATTCGTCAAAAGTTTTCTGAAGGAGTAGGAAGAAGTAGGTTAAATCTATTAGTTGCCTCGAATTTATTGATTATAGAACAATCGTCAGATGTTCTTGATCATTCTAATTGGGAAACGGAGCGGAACGCGATTTTAATGAAGTTGTTTTAGCAATCTGTTTTGTTTTGATTGAGCGTTGTCTATGCAGATGGCTCGTACCAAGCAAACCGCTCGCAAATCCACTGGTGGAAAAGCTCCCAGGAAGCAGCTTGCTACTAAGGTATGAACGTGGAAGATTGGAACCTAAATTCTCAATGCTCATTGACATTTGTTTCTTAACCCTAACCCTAATACAATTGTCGCCATTACCAATATTTTCATAGGCTGCGCGCAAGTCCGCCCCAACTACTGGAGGCGTGAAGAAACCACACAGATACCGCCCAGGAACAGTTGCTCTTCGGTGTGTAACCTTTTATCTATAATCGTTGTTCATACCACAGATCATTAATGGTTATCTTGTTCATACGAAATCTCATGGCGTCGTTTTAATGTAATGTGTTGCAGAGAAATTCGCAAGTACCAGAAGAGCACAGAGCTTCTAATTCGCAAGCTCCCATTCCAGAGGCTTGTTCGTGAAATTGCACAGGATTTCAAGACAGATCTGCGGTTCCAAAGCCACGCGGTTTTGGCTTTGCAAGAGGCGGCTGAAGCTTACCTGGTTGGGCTGTTCGAAGACACCAACCTCTGCGCCATTCATGCCAAGCGCGTTACAATAATGCCGAAAGATATTCAACTTGCCAGAAGAATTCGTGGGGAAAGAGCTTAA

mRNA sequence

CAATCATATCCATCCGCTCGGACGGGGAGCGCCGTCCTATATAAAGCGCTTAATTCATTTGCTTTCGAATTAAATCCCAATCTATTCGAGCTCCTCAATTCTCTCTCGGTTCTCAAGCGCCTCTTCGCCGTCCAGATGGCTCGTACCAAGCAAACCGCTCGCAAATCCACTGGTGGAAAAGCTCCCAGGAAGCAGCTTGCTACTAAGGCTGCGCGCAAGTCCGCCCCAACTACTGGAGGCGTGAAGAAACCACACAGATACCGCCCAGGAACAGTTGCTCTTCGAGAAATTCGCAAGTACCAGAAGAGCACAGAGCTTCTAATTCGCAAGCTCCCATTCCAGAGGCTTGTTCGTGAAATTGCACAGGATTTCAAGACAGATCTGCGGTTCCAAAGCCACGCGGTTTTGGCTTTGCAAGAGGCGGCTGAAGCTTACCTGGTTGGGCTGTTCGAAGACACCAACCTCTGCGCCATTCATGCCAAGCGCGTTACAATAATGCCGAAAGATATTCAACTTGCCAGAAGAATTCGTGGGGAAAGAGCTTAA

Coding sequence (CDS)

CAATCATATCCATCCGCTCGGACGGGGAGCGCCGTCCTATATAAAGCGCTTAATTCATTTGCTTTCGAATTAAATCCCAATCTATTCGAGCTCCTCAATTCTCTCTCGGTTCTCAAGCGCCTCTTCGCCGTCCAGATGGCTCGTACCAAGCAAACCGCTCGCAAATCCACTGGTGGAAAAGCTCCCAGGAAGCAGCTTGCTACTAAGGCTGCGCGCAAGTCCGCCCCAACTACTGGAGGCGTGAAGAAACCACACAGATACCGCCCAGGAACAGTTGCTCTTCGAGAAATTCGCAAGTACCAGAAGAGCACAGAGCTTCTAATTCGCAAGCTCCCATTCCAGAGGCTTGTTCGTGAAATTGCACAGGATTTCAAGACAGATCTGCGGTTCCAAAGCCACGCGGTTTTGGCTTTGCAAGAGGCGGCTGAAGCTTACCTGGTTGGGCTGTTCGAAGACACCAACCTCTGCGCCATTCATGCCAAGCGCGTTACAATAATGCCGAAAGATATTCAACTTGCCAGAAGAATTCGTGGGGAAAGAGCTTAA

Protein sequence

QSYPSARTGSAVLYKALNSFAFELNPNLFELLNSLSVLKRLFAVQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

Homology

[Close]

BLAST of Carg20528-RA vs. NCBI nr
Match: KAG6585308.1 (O-fucosyltransferase 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 340.1 bits (871), Expect = 1.2e-89
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   QSYPSARTGSAVLYKALNSFAFELNPNLFELLNSLSVLKRLFAVQMARTKQTARKSTGGK 60
           QSYPSARTGSAVLYKALNSFAFELNPNLFELLNSLSVLKRLFAVQMARTKQTARKSTGGK
Sbjct: 548 QSYPSARTGSAVLYKALNSFAFELNPNLFELLNSLSVLKRLFAVQMARTKQTARKSTGGK 607

Query: 61  APRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREI 120
           APRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREI
Sbjct: 608 APRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREI 667

Query: 121 AQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 180
           AQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER
Sbjct: 668 AQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 727

Query: 181 A 182
           A
Sbjct: 728 A 728

[Close]

BLAST of Carg20528-RA vs. NCBI nr
Match: KAG7020226.1 (hypothetical protein SDJN02_16909, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 340.1 bits (871), Expect = 1.2e-89
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   QSYPSARTGSAVLYKALNSFAFELNPNLFELLNSLSVLKRLFAVQMARTKQTARKSTGGK 60
           QSYPSARTGSAVLYKALNSFAFELNPNLFELLNSLSVLKRLFAVQMARTKQTARKSTGGK
Sbjct: 1   QSYPSARTGSAVLYKALNSFAFELNPNLFELLNSLSVLKRLFAVQMARTKQTARKSTGGK 60

Query: 61  APRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREI 120
           APRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREI
Sbjct: 61  APRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREI 120

Query: 121 AQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 180
           AQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER
Sbjct: 121 AQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 180

Query: 181 A 182
           A
Sbjct: 181 A 181

[Close]

BLAST of Carg20528-RA vs. NCBI nr
Match: KAG6598700.1 (hypothetical protein SDJN03_08478, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 272.7 bits (696), Expect = 2.3e-69
Identity = 148/160 (92.50%), Postives = 150/160 (93.75%), Query Frame = 0


Query: 22  FELNPNLFELLNSLSVLKRLFAVQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGV 81
           FE NP L    NSLS++K L   QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGV
Sbjct: 38  FERNPYLSVDENSLSLVKSLLFFQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGV 97

Query: 82  KKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEA 141
           KKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEA
Sbjct: 98  KKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEA 157

Query: 142 AEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 182
           AEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 158 AEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 197

[Close]

BLAST of Carg20528-RA vs. NCBI nr
Match: KAG2551494.1 (hypothetical protein PVAP13_9KG401000 [Panicum virgatum])

HSP 1 Score: 263.5 bits (672), Expect = 1.4e-66
Identity = 146/170 (85.88%), Postives = 151/170 (88.82%), Query Frame = 0


Query: 12  VLYKALNSFAFELNPNLFELLNSLSVLKRLFAVQMARTKQTARKSTGGKAPRKQLATKAA 71
           +L+  L  F FE    L  LL ++ V    F  +MARTKQTARKSTGGKAPRKQLATKAA
Sbjct: 9   LLFPLLGGFEFEKASLLSWLLAAVRV-SACFDFEMARTKQTARKSTGGKAPRKQLATKAA 68

Query: 72  RKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ 131
           RKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ
Sbjct: 69  RKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ 128

Query: 132 SHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 182
           SHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 129 SHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 177

[Close]

BLAST of Carg20528-RA vs. NCBI nr
Match: RXH73963.1 (hypothetical protein DVH24_016785 [Malus domestica])

HSP 1 Score: 261.9 bits (668), Expect = 4.0e-66
Identity = 140/151 (92.72%), Postives = 143/151 (94.70%), Query Frame = 0


Query: 31  LLNSLSVLKRLFAVQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPG 90
           LLN   + K +   +MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPG
Sbjct: 15  LLNKHYIYKEIETKEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPG 74

Query: 91  TVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLF 150
           TVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLF
Sbjct: 75  TVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLF 134

Query: 151 EDTNLCAIHAKRVTIMPKDIQLARRIRGERA 182
           EDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 135 EDTNLCAIHAKRVTIMPKDIQLARRIRGERA 165

[Close]

BLAST of Carg20528-RA vs. ExPASy Swiss-Prot
Match: P59169 (Histone H3.3 OS=Arabidopsis thaliana OX=3702 GN=HTR4 PE=1 SV=2)

HSP 1 Score: 257.3 bits (656), Expect = 1.3e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 46  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 105
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 106 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 165
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 166 MPKDIQLARRIRGERA 182
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Carg20528-RA vs. ExPASy Swiss-Prot
Match: Q6RUR1 (Histone H3.3 OS=Capsicum annuum OX=4072 PE=2 SV=3)

HSP 1 Score: 257.3 bits (656), Expect = 1.3e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 46  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 105
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 106 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 165
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 166 MPKDIQLARRIRGERA 182
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Carg20528-RA vs. ExPASy Swiss-Prot
Match: Q71V89 (Histone H3.3 OS=Gossypium hirsutum OX=3635 GN=HIS3 PE=2 SV=3)

HSP 1 Score: 257.3 bits (656), Expect = 1.3e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 46  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 105
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 106 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 165
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 166 MPKDIQLARRIRGERA 182
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Carg20528-RA vs. ExPASy Swiss-Prot
Match: Q3C2E5 (Histone H3.3 OS=Lolium multiflorum OX=4521 GN=RH3 PE=2 SV=3)

HSP 1 Score: 257.3 bits (656), Expect = 1.3e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 46  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 105
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 106 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 165
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 166 MPKDIQLARRIRGERA 182
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Carg20528-RA vs. ExPASy Swiss-Prot
Match: P69245 (Histone H3.3 OS=Lolium temulentum OX=34176 PE=2 SV=2)

HSP 1 Score: 257.3 bits (656), Expect = 1.3e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 46  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 105
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 106 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 165
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 166 MPKDIQLARRIRGERA 182
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Carg20528-RA vs. ExPASy TrEMBL
Match: A0A498HYG8 (Histone H3.2 OS=Malus domestica OX=3750 GN=DVH24_016785 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.9e-66
Identity = 140/151 (92.72%), Postives = 143/151 (94.70%), Query Frame = 0


Query: 31  LLNSLSVLKRLFAVQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPG 90
           LLN   + K +   +MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPG
Sbjct: 15  LLNKHYIYKEIETKEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPG 74

Query: 91  TVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLF 150
           TVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLF
Sbjct: 75  TVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLF 134

Query: 151 EDTNLCAIHAKRVTIMPKDIQLARRIRGERA 182
           EDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 135 EDTNLCAIHAKRVTIMPKDIQLARRIRGERA 165

[Close]

BLAST of Carg20528-RA vs. ExPASy TrEMBL
Match: A0A6N2NE70 (Histone H3.2 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS487752 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.3e-66
Identity = 141/158 (89.24%), Postives = 146/158 (92.41%), Query Frame = 0


Query: 24  LNPNLFELLNSLSVLKRLFAVQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKK 83
           L  NL++  ++ S  K     +MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKK
Sbjct: 73  LTLNLYKYTSTASSFKLYQNFRMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKK 132

Query: 84  PHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE 143
           PHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE
Sbjct: 133 PHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAE 192

Query: 144 AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 182
           AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 193 AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 230

[Close]

BLAST of Carg20528-RA vs. ExPASy TrEMBL
Match: A0A4Y7IDH6 (Histone H3 OS=Papaver somniferum OX=3469 GN=C5167_039910 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.3e-66
Identity = 139/147 (94.56%), Postives = 142/147 (96.60%), Query Frame = 0


Query: 35  LSVLKRLFAVQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVAL 94
           +S+   L  V+MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVAL
Sbjct: 1   MSICVILVFVEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVAL 60

Query: 95  REIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN 154
           REIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN
Sbjct: 61  REIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN 120

Query: 155 LCAIHAKRVTIMPKDIQLARRIRGERA 182
           LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 121 LCAIHAKRVTIMPKDIQLARRIRGERA 147

[Close]

BLAST of Carg20528-RA vs. ExPASy TrEMBL
Match: A0A6J1K4K6 (Histone H3 OS=Cucurbita maxima OX=3661 GN=LOC111492236 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.3e-66
Identity = 139/144 (96.53%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 38  LKRLFAVQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREI 97
           L R   +QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREI
Sbjct: 6   LIRTTLIQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREI 65

Query: 98  RKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCA 157
           RKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCA
Sbjct: 66  RKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCA 125

Query: 158 IHAKRVTIMPKDIQLARRIRGERA 182
           IHAKRVTIMPKDIQLARRIRGERA
Sbjct: 126 IHAKRVTIMPKDIQLARRIRGERA 149

[Close]

BLAST of Carg20528-RA vs. ExPASy TrEMBL
Match: A0A6J1KPT2 (Histone H3 OS=Cucurbita maxima OX=3661 GN=LOC111496502 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 7.4e-66
Identity = 137/139 (98.56%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 43  AVQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQK 102
           ++QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQK
Sbjct: 2   SMQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQK 61

Query: 103 STELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKR 162
           STELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKR
Sbjct: 62  STELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKR 121

Query: 163 VTIMPKDIQLARRIRGERA 182
           VTIMPKDIQLARRIRGERA
Sbjct: 122 VTIMPKDIQLARRIRGERA 140

[Close]

BLAST of Carg20528-RA vs. TAIR 10
Match: AT4G40030.2 (Histone superfamily protein )

HSP 1 Score: 258.8 bits (660), Expect = 3.2e-69
Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 44  VQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 103
           ++MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS
Sbjct: 27  IKMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 86

Query: 104 TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 163
           TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV
Sbjct: 87  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 146

Query: 164 TIMPKDIQLARRIRGERA 182
           TIMPKDIQLARRIRGERA
Sbjct: 147 TIMPKDIQLARRIRGERA 164

[Close]

BLAST of Carg20528-RA vs. TAIR 10
Match: AT4G40030.1 (Histone superfamily protein )

HSP 1 Score: 257.3 bits (656), Expect = 9.2e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 46  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 105
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 106 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 165
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 166 MPKDIQLARRIRGERA 182
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Carg20528-RA vs. TAIR 10
Match: AT4G40040.1 (Histone superfamily protein )

HSP 1 Score: 257.3 bits (656), Expect = 9.2e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 46  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 105
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 106 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 165
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 166 MPKDIQLARRIRGERA 182
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Carg20528-RA vs. TAIR 10
Match: AT4G40040.2 (Histone superfamily protein )

HSP 1 Score: 257.3 bits (656), Expect = 9.2e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 46  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 105
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 106 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 165
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 166 MPKDIQLARRIRGERA 182
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Carg20528-RA vs. TAIR 10
Match: AT4G40030.3 (Histone superfamily protein )

HSP 1 Score: 257.3 bits (656), Expect = 9.2e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 46  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 105
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 106 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 165
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 166 MPKDIQLARRIRGERA 182
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of Carg20528-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6585308.1	1.2e-89	100.00	O-fucosyltransferase 7, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7020226.1	1.2e-89	100.00	hypothetical protein SDJN02_16909, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6598700.1	2.3e-69	92.50	hypothetical protein SDJN03_08478, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG2551494.1	1.4e-66	85.88	hypothetical protein PVAP13_9KG401000 [Panicum virgatum]	[more]
RXH73963.1	4.0e-66	92.72	hypothetical protein DVH24_016785 [Malus domestica]	[more]

BLAST of Carg20528-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P59169	1.3e-67	100.00	Histone H3.3 OS=Arabidopsis thaliana OX=3702 GN=HTR4 PE=1 SV=2	[more]
Q6RUR1	1.3e-67	100.00	Histone H3.3 OS=Capsicum annuum OX=4072 PE=2 SV=3	[more]
Q71V89	1.3e-67	100.00	Histone H3.3 OS=Gossypium hirsutum OX=3635 GN=HIS3 PE=2 SV=3	[more]
Q3C2E5	1.3e-67	100.00	Histone H3.3 OS=Lolium multiflorum OX=4521 GN=RH3 PE=2 SV=3	[more]
P69245	1.3e-67	100.00	Histone H3.3 OS=Lolium temulentum OX=34176 PE=2 SV=2	[more]

BLAST of Carg20528-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A498HYG8	1.9e-66	92.72	Histone H3.2 OS=Malus domestica OX=3750 GN=DVH24_016785 PE=3 SV=1	[more]
A0A6N2NE70	3.3e-66	89.24	Histone H3.2 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS487752 PE=3 SV=1	[more]
A0A4Y7IDH6	4.3e-66	94.56	Histone H3 OS=Papaver somniferum OX=3469 GN=C5167_039910 PE=3 SV=1	[more]
A0A6J1K4K6	4.3e-66	96.53	Histone H3 OS=Cucurbita maxima OX=3661 GN=LOC111492236 PE=3 SV=1	[more]
A0A6J1KPT2	7.4e-66	98.56	Histone H3 OS=Cucurbita maxima OX=3661 GN=LOC111496502 PE=3 SV=1	[more]

BLAST of Carg20528-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G40030.2	3.2e-69	98.55	Histone superfamily protein	[more]
AT4G40030.1	9.2e-69	100.00	Histone superfamily protein	[more]
AT4G40040.1	9.2e-69	100.00	Histone superfamily protein	[more]
AT4G40040.2	9.2e-69	100.00	Histone superfamily protein	[more]
AT4G40030.3	9.2e-69	100.00	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000164	Histone H3/CENP-A	PRINTS	PR00622	HISTONEH3	coord: 143..159 score: 96.93 coord: 125..143 score: 82.38 coord: 48..62 score: 97.1 coord: 159..180 score: 94.86 coord: 62..76 score: 92.32 coord: 103..120 score: 97.46 coord: 79..100 score: 91.8
IPR000164	Histone H3/CENP-A	SMART	SM00428	h35	coord: 79..181 e-value: 1.1E-74 score: 264.1
IPR000164	Histone H3/CENP-A	PANTHER	PTHR11426	HISTONE H3	coord: 29..181
IPR000164	Histone H3/CENP-A	PROSITE	PS00322	HISTONE_H3_1	coord: 60..66
IPR000164	Histone H3/CENP-A	PROSITE	PS00959	HISTONE_H3_2	coord: 112..120
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 46..177 e-value: 2.5E-53 score: 179.9
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 47..181 e-value: 1.7E-75 score: 253.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 47..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..88
None	No IPR available	PANTHER	PTHR11426:SF198	SUBFAMILY NOT NAMED	coord: 29..181

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg20528	Carg20528	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg20528-RA:4	Carg20528-RA:4	exon
Carg20528-RA:3	Carg20528-RA:3	exon
Carg20528-RA:2	Carg20528-RA:2	exon
Carg20528-RA:1	Carg20528-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg20528-RA:cds	Carg20528-RA:cds_4	CDS
Carg20528-RA:cds	Carg20528-RA:cds_3	CDS
Carg20528-RA:cds	Carg20528-RA:cds_2	CDS
Carg20528-RA:cds	Carg20528-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg20528-RA	Carg20528-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity