Carg19110-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19110-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	pentatricopeptide repeat-containing protein At1g03560, mitochondrial-like
Location	Carg_Chr11: 12410323 .. 12411160 (-)
Sequence length	435
RNA-Seq Expression	Carg19110-RA
Synteny	Carg19110-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGAACCCTGTGGAAGGCGGATCCATTCCTTCGCTCTTCATCTCGACGCCTTCATTCACTTGATCGCAAATCATATTCTCTGAATCGAAATGGGAAACTTTCTTCGAAGAACTCAGATTGCAATGCCGCTTGCGGTTTCTTTCCAGTGGCTCCTTCTTTGCCGCCATCTGAGAGTAAGCAAGCGACCTTGTTTGCGTTCGTCAAAGGTACCTTCCGCCCCCTTCCTCTTTGCTGCAATTGATGTGAATATCTGTTTCTTCAAATTTTATTTAGTTTTGTTAATCCTGATTCATTGAATTTCTTTTTACTCTTCAAAATCCATCTATGGATTCCTGAAGCTGAAGTTGATTACGCACAAATTCACTTTGATTCGATTTCCTACCCGCTCCCACCTCCCGAATGAATAGAACCTTTTCTCGATGTTTCTGATGTAGTTTCGAGCTATCAAGTTTTGAATCTACTTGATCGGCCTTCGAACATGGAAGCCGATTTAGATTCTTTTTGTCGCAAGTTTTTCATCAAGTTAATGCCAAATTTGTTTTACAGTATGTTCAGCTTCGTGATTGGAGGATGCAACGGAATATTTTGAACTTTGTAGAAATAAATTAGTGGGAATCAATGCCATGTTTTATGCGAGTTTAGTTGATGGCCTTGGTAAGGCTGTGAGAGAATTGAAGATGCAGACAATCTGTTTGAAGAAATGTTCAAGTGCTCGAGATTCATATTGTTGTAAGGCCATTATGGATTCTCTAGCCAAGCGTGGGAAGATCGATCAAACAGTTTGTTCATACACAATTCTTATTGATGGGTTGTTCAAGGAAGCATATAACTGA

mRNA sequence

ATGAGAAGAACCCTGTGGAAGGCGGATCCATTCCTTCGCTCTTCATCTCGACGCCTTCATTCACTTGATCGCAAATCATATTCTCTGAATCGAAATGGGAAACTTTCTTCGAAGAACTCAGATTGCAATGCCGCTTGCGGTTTCTTTCCAGTGGCTCCTTCTTTGCCGCCATCTGAGAGTAAGCAAGCGACCTTGTTTGCGTTCGTCAAAGTGGGAATCAATGCCATGTTTTATGCGAGTTTAGTTGATGGCCTTGGTAAGGCTGTGAGAGAATTGAAGATGCAGACAATCTGTTTGAAGAAATGTTCAAGTGCTCGAGATTCATATTGTTGTAAGGCCATTATGGATTCTCTAGCCAAGCGTGGGAAGATCGATCAAACAGTTTGTTCATACACAATTCTTATTGATGGGTTGTTCAAGGAAGCATATAACTGA

Coding sequence (CDS)

ATGAGAAGAACCCTGTGGAAGGCGGATCCATTCCTTCGCTCTTCATCTCGACGCCTTCATTCACTTGATCGCAAATCATATTCTCTGAATCGAAATGGGAAACTTTCTTCGAAGAACTCAGATTGCAATGCCGCTTGCGGTTTCTTTCCAGTGGCTCCTTCTTTGCCGCCATCTGAGAGTAAGCAAGCGACCTTGTTTGCGTTCGTCAAAGTGGGAATCAATGCCATGTTTTATGCGAGTTTAGTTGATGGCCTTGGTAAGGCTGTGAGAGAATTGAAGATGCAGACAATCTGTTTGAAGAAATGTTCAAGTGCTCGAGATTCATATTGTTGTAAGGCCATTATGGATTCTCTAGCCAAGCGTGGGAAGATCGATCAAACAGTTTGTTCATACACAATTCTTATTGATGGGTTGTTCAAGGAAGCATATAACTGA

Protein sequence

MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSESKQATLFAFVKVGINAMFYASLVDGLGKAVRELKMQTICLKKCSSARDSYCCKAIMDSLAKRGKIDQTVCSYTILIDGLFKEAYN

Homology

[Close]

BLAST of Carg19110-RA vs. NCBI nr
Match: KAG7022907.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 288.1 bits (736), Expect = 4.2e-74
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSES 60
           MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSES
Sbjct: 1   MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSES 60

Query: 61  KQATLFAFVKVGINAMFYASLVDGLGKAVRELKMQTICLKKCSSARDSYCCKAIMDSLAK 120
           KQATLFAFVKVGINAMFYASLVDGLGKAVRELKMQTICLKKCSSARDSYCCKAIMDSLAK
Sbjct: 61  KQATLFAFVKVGINAMFYASLVDGLGKAVRELKMQTICLKKCSSARDSYCCKAIMDSLAK 120

Query: 121 RGKIDQTVCSYTILIDGLFKEAYN 145
           RGKIDQTVCSYTILIDGLFKEAYN
Sbjct: 121 RGKIDQTVCSYTILIDGLFKEAYN 144

[Close]

BLAST of Carg19110-RA vs. NCBI nr
Match: KAG6589207.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 272.7 bits (696), Expect = 1.8e-69
Identity = 143/165 (86.67%), Postives = 143/165 (86.67%), Query Frame = 0


Query: 1   MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSES 60
           MRRTLWKADPFL SSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSES
Sbjct: 1   MRRTLWKADPFLCSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSES 60

Query: 61  KQATLFAFVK---------------------VGINAMFYASLVDGLGKAVRELKMQTICL 120
           KQATLFAFVK                     VGINAMFYASLVDGLGKAVRELKMQTICL
Sbjct: 61  KQATLFAFVKVCSASRLEDATEYFELCRNKLVGINAMFYASLVDGLGKAVRELKMQTICL 120

Query: 121 KKCSSARDSYCCKAIMDSLAKRGKIDQTVCSYTILIDGLFKEAYN 145
           KKCSSARDSYCCKAIMDSLAKRGKIDQTVCSYTILIDGLFKEAYN
Sbjct: 121 KKCSSARDSYCCKAIMDSLAKRGKIDQTVCSYTILIDGLFKEAYN 165

[Close]

BLAST of Carg19110-RA vs. NCBI nr
Match: XP_022930699.1 (pentatricopeptide repeat-containing protein At1g03560, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 225.3 bits (573), Expect = 3.3e-55
Identity = 129/202 (63.86%), Postives = 133/202 (65.84%), Query Frame = 0


Query: 1   MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSES 60
           MRRTLWKA PFL SSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSES
Sbjct: 1   MRRTLWKAAPFLCSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSES 60

Query: 61  KQATLFAFVKVGIN---------------------------------------------- 120
           KQATLFAFVK  ++                                              
Sbjct: 61  KQATLFAFVKAEVDYAQIHFDSISYPLPPPEWIEPFLDVSDVVSSYQVLNLLDRPSNMEA 120

Query: 121 ------AMFYASL------VDGLGKAVRELKMQTICLKKCSSARDSYCCKAIMDSLAKRG 145
                   F+  L      +DGLGKAVRELKMQTI LKKCSSARDSYCCKAIMDSLAK G
Sbjct: 121 DLDSFCRKFFIKLMPNLFYIDGLGKAVRELKMQTIYLKKCSSARDSYCCKAIMDSLAKHG 180

[Close]

BLAST of Carg19110-RA vs. NCBI nr
Match: KAG7011962.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-11
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 0


Query: 71  VGINAMFYASLVDGLGKAVRELKMQTIC--LKKCSSARDSYCCKAIMDSLAKRGKI---- 130
           VGINAMFYAS++DGLGKA R ++ + +   + +   ARDSYC  AI+D+LAK GKI    
Sbjct: 430 VGINAMFYASMIDGLGKAGRIVEAENLFEEMFEKGCARDSYCYNAIIDALAKHGKIDQAL 489

Query: 131 -----------DQTVCSYTILIDGLFKEAYN 145
                      DQTV +YTILIDGLFKE  N
Sbjct: 490 TLFGRMEEEGCDQTVYTYTILIDGLFKEHRN 520

[Close]

BLAST of Carg19110-RA vs. NCBI nr
Match: KAG7011962.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-02
Identity = 31/48 (64.58%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 1  MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGF 49
          MRRTL +   FL SSSR L  LD KSYSL RNGKLS  +SDCN   GF
Sbjct: 1  MRRTLLRPS-FLCSSSRPLRLLDPKSYSLYRNGKLSPNSSDCNVTRGF 47

HSP 2 Score: 80.9 bits (198), Expect = 1.0e-11
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 0


Query: 71  VGINAMFYASLVDGLGKAVRELKMQTIC--LKKCSSARDSYCCKAIMDSLAKRGKI---- 130
           VGINAMFYAS++DGLGKA R ++ + +   + +   ARDSYC  AI+D+LAK GKI    
Sbjct: 430 VGINAMFYASMIDGLGKAGRIVEAENLFEEMFEKGCARDSYCYNAIIDALAKHGKIDQAL 489

Query: 131 -----------DQTVCSYTILIDGLFKEAYN 145
                      DQTV +YTILIDGLFKE  N
Sbjct: 490 TLFGRMEEEGCDQTVYTYTILIDGLFKEHRN 520

[Close]

BLAST of Carg19110-RA vs. ExPASy Swiss-Prot
Match: Q9LR67 (Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g03560 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-09
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 68  FVKVGINAMFYASLVDGLGKAVR----ELKMQTICLKKCSSARDSYCCKAIMDSLAKRGK 127
           F  + IN+MFY+SL+DGLGKA R    E   + +  K C+  RDSYC  A++D+  K  K
Sbjct: 425 FDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCT--RDSYCYNALIDAFTKHRK 484

Query: 128 I----------------DQTVCSYTILIDGLFKEAYN 145
           +                DQTV +YTIL+ G+FKE  N
Sbjct: 485 VDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRN 519

[Close]

BLAST of Carg19110-RA vs. ExPASy TrEMBL
Match: A0A6J1ES80 (pentatricopeptide repeat-containing protein At1g03560, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111437096 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.6e-55
Identity = 129/202 (63.86%), Postives = 133/202 (65.84%), Query Frame = 0


Query: 1   MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSES 60
           MRRTLWKA PFL SSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSES
Sbjct: 1   MRRTLWKAAPFLCSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGFFPVAPSLPPSES 60

Query: 61  KQATLFAFVKVGIN---------------------------------------------- 120
           KQATLFAFVK  ++                                              
Sbjct: 61  KQATLFAFVKAEVDYAQIHFDSISYPLPPPEWIEPFLDVSDVVSSYQVLNLLDRPSNMEA 120

Query: 121 ------AMFYASL------VDGLGKAVRELKMQTICLKKCSSARDSYCCKAIMDSLAKRG 145
                   F+  L      +DGLGKAVRELKMQTI LKKCSSARDSYCCKAIMDSLAK G
Sbjct: 121 DLDSFCRKFFIKLMPNLFYIDGLGKAVRELKMQTIYLKKCSSARDSYCCKAIMDSLAKHG 180

[Close]

BLAST of Carg19110-RA vs. ExPASy TrEMBL
Match: A0A6J1I1D4 (pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111468147 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.9e-12
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 0


Query: 71  VGINAMFYASLVDGLGKAVRELKMQTIC--LKKCSSARDSYCCKAIMDSLAKRGKI---- 130
           VGINAMFYAS++DGLGKA R ++ + +   + +   ARDSYC  AI+D+LAK GKI    
Sbjct: 430 VGINAMFYASMIDGLGKAGRIVEAENLFEEMFEKGCARDSYCYNAIIDALAKHGKIDQAL 489

Query: 131 -----------DQTVCSYTILIDGLFKEAYN 145
                      DQTV +YTILIDGLFKE  N
Sbjct: 490 ALFGRMEEEGCDQTVYTYTILIDGLFKEHRN 520

[Close]

BLAST of Carg19110-RA vs. ExPASy TrEMBL
Match: A0A6J1GLU6 (pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111455532 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.9e-12
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 0


Query: 71  VGINAMFYASLVDGLGKAVRELKMQTIC--LKKCSSARDSYCCKAIMDSLAKRGKI---- 130
           VGINAMFYAS++DGLGKA R ++ + +   + +   ARDSYC  AI+D+LAK GKI    
Sbjct: 430 VGINAMFYASMIDGLGKAGRIVEAENLFEEMFEKGCARDSYCYNAIIDALAKHGKIDQAL 489

Query: 131 -----------DQTVCSYTILIDGLFKEAYN 145
                      DQTV +YTILIDGLFKE  N
Sbjct: 490 TLFGRMEEEGCDQTVYTYTILIDGLFKEHRN 520

[Close]

BLAST of Carg19110-RA vs. ExPASy TrEMBL
Match: A0A6J1GLU6 (pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111455532 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.2e-02
Identity = 30/48 (62.50%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 1  MRRTLWKADPFLRSSSRRLHSLDRKSYSLNRNGKLSSKNSDCNAACGF 49
          MRRTL +   FL SSSR L  LD KSYSL RNGK+S  +SDCN   GF
Sbjct: 1  MRRTLLRPS-FLCSSSRPLRLLDPKSYSLYRNGKVSPNSSDCNVTRGF 47

HSP 2 Score: 77.4 bits (189), Expect = 5.4e-11
Identity = 53/102 (51.96%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 65  LFAFVK---VGINAMFYASLVDGLGKAVR----ELKMQTICLKKCSSARDSYCCKAIMDS 124
           LF F +   V INAMFYASL+DGLGKA R    E   + +  K C  ARDSYC  AI+D+
Sbjct: 417 LFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGC--ARDSYCYNAIIDA 476

Query: 125 LAKRGKI---------------DQTVCSYTILIDGLFKEAYN 145
           LAK GKI               DQTV ++TILIDGLFKE  N
Sbjct: 477 LAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKN 516

[Close]

BLAST of Carg19110-RA vs. ExPASy TrEMBL
Match: A0A6J1D2R3 (pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111016800 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 9.2e-11
Identity = 49/93 (52.69%), Postives = 57/93 (61.29%), Query Frame = 0


Query: 71  VGINAMFYASLVDGLGKAVR----ELKMQTICLKKCSSARDSYCCKAIMDSLAKRGKI-- 130
           V INAMFYAS++DGLGKA R    E   + +  K C  ARDSYC  A++D+LAK GKI  
Sbjct: 430 VAINAMFYASIIDGLGKAGRIEEAENLFEEMFRKGC--ARDSYCYNALIDALAKDGKIDQ 489

Query: 131 -------------DQTVCSYTILIDGLFKEAYN 145
                        DQTV +YTILIDGLFKE  N
Sbjct: 490 ALALFGRMEDEGCDQTVYTYTILIDGLFKEHRN 520

[Close]

BLAST of Carg19110-RA vs. TAIR 10
Match: AT1G03560.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-10
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 68  FVKVGINAMFYASLVDGLGKAVR----ELKMQTICLKKCSSARDSYCCKAIMDSLAKRGK 127
           F  + IN+MFY+SL+DGLGKA R    E   + +  K C+  RDSYC  A++D+  K  K
Sbjct: 425 FDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCT--RDSYCYNALIDAFTKHRK 484

Query: 128 I----------------DQTVCSYTILIDGLFKEAYN 145
           +                DQTV +YTIL+ G+FKE  N
Sbjct: 485 VDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRN 519

The following BLAST results are available for this feature:

BLAST of Carg19110-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022907.1	4.2e-74	100.00	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
KAG6589207.1	1.8e-69	86.67	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_022930699.1	3.3e-55	63.86	pentatricopeptide repeat-containing protein At1g03560, mitochondrial-like [Cucur...	[more]
KAG7011962.1	1.0e-11	52.75	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
KAG7011962.1	1.1e-02	64.58	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]

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BLAST of Carg19110-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LR67	2.2e-09	41.24	Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidop...	[more]

BLAST of Carg19110-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ES80	1.6e-55	63.86	pentatricopeptide repeat-containing protein At1g03560, mitochondrial-like OS=Cuc...	[more]
A0A6J1I1D4	4.9e-12	52.75	pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Cucurbit...	[more]
A0A6J1GLU6	4.9e-12	52.75	pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Cucurbit...	[more]
A0A6J1GLU6	1.2e-02	62.50	pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Cucurbit...	[more]
A0A6J1D2R3	9.2e-11	52.69	pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Momordic...	[more]

BLAST of Carg19110-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03560.1	1.6e-10	41.24	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg19110	Carg19110	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg19110-RA:1	Carg19110-RA:1	exon
Carg19110-RA:2	Carg19110-RA:2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg19110-RA:cds	Carg19110-RA:cds_2	CDS
Carg19110-RA:cds	Carg19110-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg19110-RA	Carg19110-RA-protein	polypeptide