Carg18966-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18966-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nuclear pore complex protein
Location	Carg_Chr17: 5926923 .. 5930259 (-)
Sequence length	1457
RNA-Seq Expression	Carg18966-RA
Synteny	Carg18966-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTGGTTTTGTTTATGGTCATTACGTGTTTATATGATGTACTTGACCAGTGTACTATCAAGATCTCGGGAGACAAAAATTGGTAGTTCTGACAAGTTATCAGATGCTGTAGAACAACACCGCCTGCAGAGTCTTCAGAAAGCTATGGTTGTCCAGTGGCTCTGCTTTACCCCTCCCACAATTGCTAATGTCAAAGATGTTAGTACTAAACTTCTTCTCCGAGCATTGGCACATAGGTAATAATTGTAGTTCGCTGTTGCTGTAGAACCACCAATGTTTCTTTTTAGTACAAGGCACACTAGAGTATAAACCACACTCTAAAAAAAAGGGCTTAGAGGAAATTGGTTCAAACTATGGTGGTCACATAACTAGGATTTCATATCCCAAGTGTTTTTTTTTTGGCAACCGGGTTAGGAAATTGTTTGAAAACATGAGGCATTTTGAAGCGAGGTGTCTTGGGAGGGCATGGCTCCTAGGCACACTTTCTGGAAGACTGACTATATCATGATAAATTATGAATGTTGATTGATTCTTGCAAATCTGGGGTGATGCTTTTGATACTTTATTGGAGTTACATTTGACTTTGAAGTTAGTTGATAGTGCAAGTCCTTTTTGTATGGAGCAACGAAGCAACGCTGATCTCTTACACTTTTCTGTAAACTAGTTCAAGTGTAGGTTGAGTGGCTATTTTATTATTTGTATGCCTACCTTGTAATGGTAATATATGGATGTTGGATTTGGTCTATTGTTAATGCATATTTTCTTTTTCCTATACTGCTGCTTTCTACAGCTTTTGAATTTCAATCGTTTGCTGTTTTATAGCAATATCCTGTTCAGAGAGTTTGCTCTGATATCCATGTGGAGAATCCCATCAATTCCCAATGGTGCACACAAGTTACTTAGTCTTCTTGCTGAGCCTTTGAGGCAGAATTCAGAAACATTTAGTGCGTTGGAGGATAATGGTGTTCTGGAGAACTTAAAAGAGTTCGAGGATTGGGTATGCTTCCAATTCTTGTAATTACATGTTGGTCATTGTGGCTGTACTACCTGTTTTGATTACTGTGTACTTTCATCTAATAGAATTTATATCTACATTAGAGTGAATATTTCGCCTGTGATGCAACATATCGCAACTGGCTCAAAATTGAGTTGGAGAATAATGAAGCGTCTTCCCTCGATCTCTCATTGGAAGAAAAACAAAGATCCATCGTAGCTGCTAATGAGACACTCGATTCGTCGTTTTCATTGTTACTTAGTATGCTTTATCTATTCTTTTCCCCATTCATAATTAGAAACCCCAGGCATACTACTCTTCATTGCTCACGATCTTTCTGCAAATAATTTTCCTTTCTGTAGGGAAAGAAAGTCCGTGGTTGGATTTCACAGAAGATTACGTCTATGAGGCAATGGAACCTCTTTATATTGAATTGCATGCCGTTGTCATGCTCTGTTTACCTTCAGGAGAATGTTTATGTCCTGAAGCCGCAACATGCACAACCTTAACAAGTGCCCTTTACTCCTCTGTAACTGAAGAGATCATATTAAATCGGAAACTAGTGGTATGTTTCTTAAACATGATCTCGTATAGGTTTTTTACTTACTTTTTGTGGCAAAGAATCAGAGATAATTTATTATTATTATTATTTTGAAGTATTTGTTCGTTGGTGTATTCGTCTATTCTTTGTTTCATTTTTATAGATAGACTCTAAACCCCAGATTTTCTTTCACCAGCCTATTATACTTTGTTCTCGGGATGAAGTAGGGTCCTTGCCCTTTCAAATTTAAAATTATGTAATGAACTCAGTTTTGGCCTGGCTGATGAAAGGAGAGTGGGATGCCCTATTATCCTCTGTTGATTACTTGTTACCATTTTTTTGTATTTATTATCTTTTATTTTATTACAAATTTCACCTTATTTCTTATTGGGATAAAAAAACCAGACTATTTAAATTTTTTTATATGTTCTTCGAATATGCAGGTGAATGTCTCCATTGCATCTGGGGAAGGTTTCTGCATTAAGATTGTGCTTCGCTGTTTAGCAACACCAGGTGATGGGCTTGGGCACTGTGAAGGCAATGATGGTGGCATTCTTAGTGGCATCATGGCAGCTGGATTCAAGGGTAAGAAGTACTATGCAACTTTGAGTACAGTATCCTACTTTTCAGTTACTAATTGGAGGTCTAGTGTAAATATGGGTTTTGTTCTTGTGGCATTTGAAATGATGAAATCTGAGATGTGGATATCTCTCTTAGTTCTTCACCCCACTTCTTAACAGAAAAAGAACGTGCATTGAACAAGTAAGACTTTTATATGTTGTAGGTGAGCTTCGCGGTTATCAAGCTGGAGTCACTTTGGAGGTTTTGCGTCTAGATGCATGGTGTTCAAACGAAGATGGCTCGCTAGAATGCCCGGCAGCATACATCGTGCAAGGCTTATGTCGTAGGTGCTGCCTTCCAGAAGTTATTCTTCGATGCATGCAGGTAATACTTCTTTGAGGCTAGTGGACTTTATATTAGATCTGCCTTTTACTTCTCGTTAATTATTCAACCTAGCATCTACTTTCCATGAATAATCTGAGTTACTCTCTCTACGGATACAGTAAAAACCATTTTGGGTTAGCATGGTTGTCATTTGGGCTGGTAAAATAAAATGAGATAAAATGTGGTATGGTAGCTAGGCATCTCATGAGATTTGGTGGTTTGTTTTCCTTGGATCAGCAGTAAAATGATGTAGGAGCATTCTGGCATATGTATATAGATACTTTCGCGTACACGATTTTCGAACATTAGAGGATGAAATATTCAACAAGACATAATCTGGACTCTCCTTCTATTCATTTATATCATCTTATTCTCAGGTTTCTGTGGCTCTGATGGAGTTGGGTTTGGAACCGAAATGCCATGATCAGTTGATCGAACTCGTGGCGAGCTCTGAATCTGGGTTTTCTGATTTGTTCAGCCAGCAACAATTCGAGGTATCTCTCAGTTAACTTTGTCATAATATAAGAAATCTGGTACCTAATGTTACGAGGGCTTTGACATCAAAATTTGATATCACATTGTCACTTGCAGGAATTTTTGATACTTGAGAGAGAGTACACATTACGCAAAATGGAGCTTGGAGAGCCTTCTTCCTGACTTTGCTATATGGATCCGATATTCAAATCTCCGACCAGCAATTTGAACACTTGATAGTTCTTTGATTTCTAATGTATGGAAATATCTGTTAGATAGGATGCTTTGTATTGACTTAGATTATATGTTATCATCATCAATGAAAAATATGATTGAAAGCAATTCATAAATTTGGTACGAAATTAAACCTAAGAATTTTT

mRNA sequence

ATGATCTGGTTTTGTTTATGGTCATTACGTGTTTATATGATGTACTTGACCAGTGTACTATCAAGATCTCGGGAGACAAAAATTGGTAGTTCTGACAAGTTATCAGATGCTGTAGAACAACACCGCCTGCAGAGTCTTCAGAAAGCTATGGTTGTCCAGTGGCTCTGCTTTACCCCTCCCACAATTGCTAATGTCAAAGATGTTAGTACTAAACTTCTTCTCCGAGCATTGGCACATAGCAATATCCTGTTCAGAGAGTTTGCTCTGATATCCATGTGGAGAATCCCATCAATTCCCAATGGTGCACACAAGTTACTTAGTCTTCTTGCTGAGCCTTTGAGGCAGAATTCAGAAACATTTAGTGCGTTGGAGGATAATGGTGTTCTGGAGAACTTAAAAGAGTTCGAGGATTGGAGTGAATATTTCGCCTGTGATGCAACATATCGCAACTGGCTCAAAATTGAGTTGGAGAATAATGAAGCGTCTTCCCTCGATCTCTCATTGGAAGAAAAACAAAGATCCATCGTAGCTGCTAATGAGACACTCGATTCGTCGTTTTCATTGTTACTTAGGAAAGAAAGTCCGTGGTTGGATTTCACAGAAGATTACGTCTATGAGGCAATGGAACCTCTTTATATTGAATTGCATGCCGTTGTCATGCTCTGTTTACCTTCAGGAGAATGTTTATGTCCTGAAGCCGCAACATGCACAACCTTAACAAGTGCCCTTTACTCCTCTGTAACTGAAGAGATCATATTAAATCGGAAACTAGTGGTGAATGTCTCCATTGCATCTGGGGAAGGTTTCTGCATTAAGATTGTGCTTCGCTGTTTAGCAACACCAGGTGATGGGCTTGGGCACTGTGAAGGCAATGATGGTGGCATTCTTAGTGGCATCATGGCAGCTGGATTCAAGGGTGAGCTTCGCGGTTATCAAGCTGGAGTCACTTTGGAGGTTTTGCGTCTAGATGCATGGTGTTCAAACGAAGATGGCTCGCTAGAATGCCCGGCAGCATACATCGTGCAAGGCTTATGTCGTAGGTGCTGCCTTCCAGAAGTTATTCTTCGATGCATGCAGGTTTCTGTGGCTCTGATGGAGTTGGGTTTGGAACCGAAATGCCATGATCAGTTGATCGAACTCGTGGCGAGCTCTGAATCTGGGTTTTCTGATTTGTTCAGCCAGCAACAATTCGAGGAATTTTTGATACTTGAGAGAGAGTACACATTACGCAAAATGGAGCTTGGAGAGCCTTCTTCCTGACTTTGCTATATGGATCCGATATTCAAATCTCCGACCAGCAATTTGAACACTTGATAGTTCTTTGATTTCTAATGTATGGAAATATCTGTTAGATAGGATGCTTTGTATTGACTTAGATTATATGTTATCATCATCAATGAAAAATATGATTGAAAGCAATTCATAAATTTGGTACGAAATTAAACCTAAGAATTTTT

Coding sequence (CDS)

ATGATCTGGTTTTGTTTATGGTCATTACGTGTTTATATGATGTACTTGACCAGTGTACTATCAAGATCTCGGGAGACAAAAATTGGTAGTTCTGACAAGTTATCAGATGCTGTAGAACAACACCGCCTGCAGAGTCTTCAGAAAGCTATGGTTGTCCAGTGGCTCTGCTTTACCCCTCCCACAATTGCTAATGTCAAAGATGTTAGTACTAAACTTCTTCTCCGAGCATTGGCACATAGCAATATCCTGTTCAGAGAGTTTGCTCTGATATCCATGTGGAGAATCCCATCAATTCCCAATGGTGCACACAAGTTACTTAGTCTTCTTGCTGAGCCTTTGAGGCAGAATTCAGAAACATTTAGTGCGTTGGAGGATAATGGTGTTCTGGAGAACTTAAAAGAGTTCGAGGATTGGAGTGAATATTTCGCCTGTGATGCAACATATCGCAACTGGCTCAAAATTGAGTTGGAGAATAATGAAGCGTCTTCCCTCGATCTCTCATTGGAAGAAAAACAAAGATCCATCGTAGCTGCTAATGAGACACTCGATTCGTCGTTTTCATTGTTACTTAGGAAAGAAAGTCCGTGGTTGGATTTCACAGAAGATTACGTCTATGAGGCAATGGAACCTCTTTATATTGAATTGCATGCCGTTGTCATGCTCTGTTTACCTTCAGGAGAATGTTTATGTCCTGAAGCCGCAACATGCACAACCTTAACAAGTGCCCTTTACTCCTCTGTAACTGAAGAGATCATATTAAATCGGAAACTAGTGGTGAATGTCTCCATTGCATCTGGGGAAGGTTTCTGCATTAAGATTGTGCTTCGCTGTTTAGCAACACCAGGTGATGGGCTTGGGCACTGTGAAGGCAATGATGGTGGCATTCTTAGTGGCATCATGGCAGCTGGATTCAAGGGTGAGCTTCGCGGTTATCAAGCTGGAGTCACTTTGGAGGTTTTGCGTCTAGATGCATGGTGTTCAAACGAAGATGGCTCGCTAGAATGCCCGGCAGCATACATCGTGCAAGGCTTATGTCGTAGGTGCTGCCTTCCAGAAGTTATTCTTCGATGCATGCAGGTTTCTGTGGCTCTGATGGAGTTGGGTTTGGAACCGAAATGCCATGATCAGTTGATCGAACTCGTGGCGAGCTCTGAATCTGGGTTTTCTGATTTGTTCAGCCAGCAACAATTCGAGGAATTTTTGATACTTGAGAGAGAGTACACATTACGCAAAATGGAGCTTGGAGAGCCTTCTTCCTGA

Protein sequence

MIWFCLWSLRVYMMYLTSVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPPTIANVKDVSTKLLLRALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKEFEDWSEYFACDATYRNWLKIELENNEASSLDLSLEEKQRSIVAANETLDSSFSLLLRKESPWLDFTEDYVYEAMEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILNRKLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIMAAGFKGELRGYQAGVTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCHDQLIELVASSESGFSDLFSQQQFEEFLILEREYTLRKMELGEPSS

Homology

[Close]

BLAST of Carg18966-RA vs. NCBI nr
Match: KAG7013971.1 (Nuclear pore complex protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 828.9 bits (2140), Expect = 1.9e-236
Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 0


Query: 1   MIWFCLWSLRVYMMYLTSVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPP 60
           MIWFCLWSLRVYMMYLTSVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPP
Sbjct: 1   MIWFCLWSLRVYMMYLTSVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPP 60

Query: 61  TIANVKDVSTKLLLRALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETF 120
           TIANVKDVSTKLLLRALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETF
Sbjct: 61  TIANVKDVSTKLLLRALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETF 120

Query: 121 SALEDNGVLENLKEFEDWSEYFACDATYRNWLKIELENNEASSLDLSLEEKQRSIVAANE 180
           SALEDNGVLENLKEFEDWSEYFACDATYRNWLKIELENNEASSLDLSLEEKQRSIVAANE
Sbjct: 121 SALEDNGVLENLKEFEDWSEYFACDATYRNWLKIELENNEASSLDLSLEEKQRSIVAANE 180

Query: 181 TLDSSFSLLLRKESPWLDFTEDYVYEAMEPLYIELHAVVMLCLPSGECLCPEAATCTTLT 240
           TLDSSFSLLLRKESPWLDFTEDYVYEAMEPLYIELHAVVMLCLPSGECLCPEAATCTTLT
Sbjct: 181 TLDSSFSLLLRKESPWLDFTEDYVYEAMEPLYIELHAVVMLCLPSGECLCPEAATCTTLT 240

Query: 241 SALYSSVTEEIILNRKLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIM 300
           SALYSSVTEEIILNRKLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIM
Sbjct: 241 SALYSSVTEEIILNRKLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIM 300

Query: 301 AAGFKGELRGYQAGVTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQV 360
           AAGFKGELRGYQAGVTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQV
Sbjct: 301 AAGFKGELRGYQAGVTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQV 360

Query: 361 SVALMELGLEPKCHDQLIELVASSESGFSDLFSQQQFEEFLILEREYTLRKMELGEPSS 420
           SVALMELGLEPKCHDQLIELVASSESGFSDLFSQQQFEEFLILEREYTLRKMELGEPSS
Sbjct: 361 SVALMELGLEPKCHDQLIELVASSESGFSDLFSQQQFEEFLILEREYTLRKMELGEPSS 419

[Close]

BLAST of Carg18966-RA vs. NCBI nr
Match: KAG6575429.1 (Nuclear pore complex protein 107, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 792.3 bits (2045), Expect = 2.0e-225
Identity = 401/404 (99.26%), Postives = 403/404 (99.75%), Query Frame = 0


Query: 16   LTSVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPPTIANVKDVSTKLLLR 75
            + SVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPPTIANVKDVSTKLLLR
Sbjct: 706  IESVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPPTIANVKDVSTKLLLR 765

Query: 76   ALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKEF 135
            ALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKEF
Sbjct: 766  ALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKEF 825

Query: 136  EDWSEYFACDATYRNWLKIELENNEASSLDLSLEEKQRSIVAANETLDSSFSLLLRKESP 195
            EDWSEYFACDATYRNWLKIELENNEASSLDLSLEEKQRSIVAANETLDSSFSLLLRKESP
Sbjct: 826  EDWSEYFACDATYRNWLKIELENNEASSLDLSLEEKQRSIVAANETLDSSFSLLLRKESP 885

Query: 196  WLDFTEDYVYEAMEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILNR 255
            WLDFTEDYVYEAMEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILNR
Sbjct: 886  WLDFTEDYVYEAMEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILNR 945

Query: 256  KLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIMAAGFKGELRGYQAGV 315
            KLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIMAAGFKGELRG+QAGV
Sbjct: 946  KLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIMAAGFKGELRGFQAGV 1005

Query: 316  TLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCHD 375
            TLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCHD
Sbjct: 1006 TLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCHD 1065

Query: 376  QLIELVASSESGFSDLFSQQQFEEFLILEREYTLRKMELGEPSS 420
            QLIELVASSESGFSDLFSQQQFEEFLILEREYTLRKMELGEPSS
Sbjct: 1066 QLIELVASSESGFSDLFSQQQFEEFLILEREYTLRKMELGEPSS 1109

[Close]

BLAST of Carg18966-RA vs. NCBI nr
Match: XP_023549300.1 (nuclear pore complex protein NUP107 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 784.6 bits (2025), Expect = 4.1e-223
Identity = 399/405 (98.52%), Postives = 402/405 (99.26%), Query Frame = 0


Query: 16   LTSVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPP-TIANVKDVSTKLLL 75
            + SVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPP TIANVKDVSTKLLL
Sbjct: 657  IESVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPPSTIANVKDVSTKLLL 716

Query: 76   RALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKE 135
            RALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKE
Sbjct: 717  RALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKE 776

Query: 136  FEDWSEYFACDATYRNWLKIELENNEASSLDLSLEEKQRSIVAANETLDSSFSLLLRKES 195
            FEDWSEYFACDATYRNWLKIELENNEA SLDLSLEEKQRSIVAANETLDSSFSLLLRKES
Sbjct: 777  FEDWSEYFACDATYRNWLKIELENNEAPSLDLSLEEKQRSIVAANETLDSSFSLLLRKES 836

Query: 196  PWLDFTEDYVYEAMEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILN 255
            PWLDFTEDYVYE+MEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILN
Sbjct: 837  PWLDFTEDYVYESMEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILN 896

Query: 256  RKLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIMAAGFKGELRGYQAG 315
            RKLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIMAAGFKGELRG+QAG
Sbjct: 897  RKLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIMAAGFKGELRGFQAG 956

Query: 316  VTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCH 375
            VTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCH
Sbjct: 957  VTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCH 1016

Query: 376  DQLIELVASSESGFSDLFSQQQFEEFLILEREYTLRKMELGEPSS 420
            DQLIELVASSESGFSDLFSQQQFEEFLILEREYTLRKMELGEPSS
Sbjct: 1017 DQLIELVASSESGFSDLFSQQQFEEFLILEREYTLRKMELGEPSS 1061

[Close]

BLAST of Carg18966-RA vs. NCBI nr
Match: XP_022954255.1 (nuclear pore complex protein NUP107 [Cucurbita moschata])

HSP 1 Score: 780.0 bits (2013), Expect = 1.0e-221
Identity = 397/405 (98.02%), Postives = 401/405 (99.01%), Query Frame = 0


Query: 16   LTSVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPPT-IANVKDVSTKLLL 75
            + SVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPP+ IA VK+VSTKLLL
Sbjct: 657  IESVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPPSKIAKVKEVSTKLLL 716

Query: 76   RALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKE 135
            RALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKE
Sbjct: 717  RALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKE 776

Query: 136  FEDWSEYFACDATYRNWLKIELENNEASSLDLSLEEKQRSIVAANETLDSSFSLLLRKES 195
            FEDWSEYFACDATYRNWLKIELENNEASSLDLSLEEKQRSIVAANETLDSSFSLLLRKES
Sbjct: 777  FEDWSEYFACDATYRNWLKIELENNEASSLDLSLEEKQRSIVAANETLDSSFSLLLRKES 836

Query: 196  PWLDFTEDYVYEAMEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILN 255
            PWLDFTEDYVYEAMEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSV EEIILN
Sbjct: 837  PWLDFTEDYVYEAMEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVIEEIILN 896

Query: 256  RKLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIMAAGFKGELRGYQAG 315
            RKLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIMAAGFKGELRG+QAG
Sbjct: 897  RKLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIMAAGFKGELRGFQAG 956

Query: 316  VTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCH 375
            VTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCH
Sbjct: 957  VTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCH 1016

Query: 376  DQLIELVASSESGFSDLFSQQQFEEFLILEREYTLRKMELGEPSS 420
            DQLIELVASSESGFSDLFSQQQFEEFLILEREYTLRKMELGEPSS
Sbjct: 1017 DQLIELVASSESGFSDLFSQQQFEEFLILEREYTLRKMELGEPSS 1061

[Close]

BLAST of Carg18966-RA vs. NCBI nr
Match: XP_022992068.1 (nuclear pore complex protein NUP107 [Cucurbita maxima])

HSP 1 Score: 778.9 bits (2010), Expect = 2.3e-221
Identity = 395/405 (97.53%), Postives = 401/405 (99.01%), Query Frame = 0


Query: 16   LTSVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPP-TIANVKDVSTKLLL 75
            + SVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPP TIANVKDVSTKLLL
Sbjct: 657  IESVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPPSTIANVKDVSTKLLL 716

Query: 76   RALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKE 135
            RALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKE
Sbjct: 717  RALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKE 776

Query: 136  FEDWSEYFACDATYRNWLKIELENNEASSLDLSLEEKQRSIVAANETLDSSFSLLLRKES 195
            FEDWSEYFACDATYRNWLKIELENNEA SLDLSLEEKQRSIVAANETLDSSFSLLLRKES
Sbjct: 777  FEDWSEYFACDATYRNWLKIELENNEAPSLDLSLEEKQRSIVAANETLDSSFSLLLRKES 836

Query: 196  PWLDFTEDYVYEAMEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILN 255
            PWLDFTEDYVYE+MEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILN
Sbjct: 837  PWLDFTEDYVYESMEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILN 896

Query: 256  RKLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIMAAGFKGELRGYQAG 315
            RKLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGN GGI+SGIMAAGFKGELRG+QAG
Sbjct: 897  RKLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNGGGIVSGIMAAGFKGELRGFQAG 956

Query: 316  VTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCH 375
            VTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCH
Sbjct: 957  VTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCH 1016

Query: 376  DQLIELVASSESGFSDLFSQQQFEEFLILEREYTLRKMELGEPSS 420
            DQLIELVASSESGFSDLFSQQQFEEFLILEREYT+R+MELGEPSS
Sbjct: 1017 DQLIELVASSESGFSDLFSQQQFEEFLILEREYTIRRMELGEPSS 1061

[Close]

BLAST of Carg18966-RA vs. ExPASy Swiss-Prot
Match: Q8L748 (Nuclear pore complex protein NUP107 OS=Arabidopsis thaliana OX=3702 GN=NUP107 PE=1 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 4.5e-140
Identity = 258/426 (60.56%), Postives = 323/426 (75.82%), Query Frame = 0


Query: 19   VLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPP-TIANVKDVSTKLLLRAL 78
            VLSRSRE K+   D   D  EQHR QSLQKA+ +QWLCFTPP TI +VKDV++KLLLR+L
Sbjct: 677  VLSRSREIKLAKYDPSIDVAEQHRQQSLQKAIAIQWLCFTPPSTIKDVKDVTSKLLLRSL 736

Query: 79   AHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKEFED 138
             HSNILFREFALI+MWR+P+ P GAH LLS LAEPL+Q SE    LED  V ENL+EF+D
Sbjct: 737  MHSNILFREFALIAMWRVPATPVGAHTLLSYLAEPLKQLSENPDTLEDY-VSENLQEFQD 796

Query: 139  WSEYFACDATYRNWLKIELENNEASSLDLSLEEKQRSIVAANETLDSSFSLLLRKESPWL 198
            W+EY++CDA YRNWLK +LEN E +  +LS EE Q+++VAA ETLDSS SLLLR+++PW+
Sbjct: 797  WNEYYSCDAKYRNWLKFQLENAEVT--ELSEEENQKAVVAAKETLDSSLSLLLRQDNPWM 856

Query: 199  DFTEDYVYEAMEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILNRKL 258
             F ED+V+E+ E L++ELHA  MLCLPSGECL P+A  C  L SALYSSV+EE++L+R+L
Sbjct: 857  TFLEDHVFESEEYLFLELHATAMLCLPSGECLRPDATVCAALMSALYSSVSEEVVLDRQL 916

Query: 259  VVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIMAAGFKG----------- 318
            +VNVSI+S + +CI++VLRCLA  GDGLG    NDGGILS + AAGFKG           
Sbjct: 917  MVNVSISSRDSYCIEVVLRCLAIKGDGLGPHNANDGGILSAVAAAGFKGSDIYGTYFSFT 976

Query: 319  -------------ELRGYQAGVTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEV 378
                         EL  +QAGVT+++ RLDAW S+++GSLE PA YIV+GLCRRCCLPE+
Sbjct: 977  YDLPPFSIEIWGCELTRFQAGVTMDISRLDAWYSSKEGSLETPATYIVRGLCRRCCLPEL 1036

Query: 379  ILRCMQVSVALMELGLEPKCHDQLIELVASSESGFSDLFSQQQFEEFLILEREYTLRKME 420
            +LR MQVSV+LME G  P+ HD+LIELVAS E+GF  LFS+QQ +EF++ EREY + ++E
Sbjct: 1037 VLRSMQVSVSLMESGNPPEDHDELIELVASDETGFLSLFSRQQLQEFMLFEREYRMSQLE 1096

[Close]

BLAST of Carg18966-RA vs. ExPASy TrEMBL
Match: A0A6J1GRY5 (Nuclear pore complex protein OS=Cucurbita moschata OX=3662 GN=LOC111456566 PE=3 SV=1)

HSP 1 Score: 780.0 bits (2013), Expect = 4.9e-222
Identity = 397/405 (98.02%), Postives = 401/405 (99.01%), Query Frame = 0


Query: 16   LTSVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPPT-IANVKDVSTKLLL 75
            + SVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPP+ IA VK+VSTKLLL
Sbjct: 657  IESVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPPSKIAKVKEVSTKLLL 716

Query: 76   RALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKE 135
            RALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKE
Sbjct: 717  RALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKE 776

Query: 136  FEDWSEYFACDATYRNWLKIELENNEASSLDLSLEEKQRSIVAANETLDSSFSLLLRKES 195
            FEDWSEYFACDATYRNWLKIELENNEASSLDLSLEEKQRSIVAANETLDSSFSLLLRKES
Sbjct: 777  FEDWSEYFACDATYRNWLKIELENNEASSLDLSLEEKQRSIVAANETLDSSFSLLLRKES 836

Query: 196  PWLDFTEDYVYEAMEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILN 255
            PWLDFTEDYVYEAMEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSV EEIILN
Sbjct: 837  PWLDFTEDYVYEAMEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVIEEIILN 896

Query: 256  RKLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIMAAGFKGELRGYQAG 315
            RKLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIMAAGFKGELRG+QAG
Sbjct: 897  RKLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIMAAGFKGELRGFQAG 956

Query: 316  VTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCH 375
            VTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCH
Sbjct: 957  VTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCH 1016

Query: 376  DQLIELVASSESGFSDLFSQQQFEEFLILEREYTLRKMELGEPSS 420
            DQLIELVASSESGFSDLFSQQQFEEFLILEREYTLRKMELGEPSS
Sbjct: 1017 DQLIELVASSESGFSDLFSQQQFEEFLILEREYTLRKMELGEPSS 1061

[Close]

BLAST of Carg18966-RA vs. ExPASy TrEMBL
Match: A0A6J1JY08 (Nuclear pore complex protein OS=Cucurbita maxima OX=3661 GN=LOC111488527 PE=3 SV=1)

HSP 1 Score: 778.9 bits (2010), Expect = 1.1e-221
Identity = 395/405 (97.53%), Postives = 401/405 (99.01%), Query Frame = 0


Query: 16   LTSVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPP-TIANVKDVSTKLLL 75
            + SVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPP TIANVKDVSTKLLL
Sbjct: 657  IESVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPPSTIANVKDVSTKLLL 716

Query: 76   RALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKE 135
            RALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKE
Sbjct: 717  RALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKE 776

Query: 136  FEDWSEYFACDATYRNWLKIELENNEASSLDLSLEEKQRSIVAANETLDSSFSLLLRKES 195
            FEDWSEYFACDATYRNWLKIELENNEA SLDLSLEEKQRSIVAANETLDSSFSLLLRKES
Sbjct: 777  FEDWSEYFACDATYRNWLKIELENNEAPSLDLSLEEKQRSIVAANETLDSSFSLLLRKES 836

Query: 196  PWLDFTEDYVYEAMEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILN 255
            PWLDFTEDYVYE+MEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILN
Sbjct: 837  PWLDFTEDYVYESMEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILN 896

Query: 256  RKLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIMAAGFKGELRGYQAG 315
            RKLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGN GGI+SGIMAAGFKGELRG+QAG
Sbjct: 897  RKLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNGGGIVSGIMAAGFKGELRGFQAG 956

Query: 316  VTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCH 375
            VTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCH
Sbjct: 957  VTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCH 1016

Query: 376  DQLIELVASSESGFSDLFSQQQFEEFLILEREYTLRKMELGEPSS 420
            DQLIELVASSESGFSDLFSQQQFEEFLILEREYT+R+MELGEPSS
Sbjct: 1017 DQLIELVASSESGFSDLFSQQQFEEFLILEREYTIRRMELGEPSS 1061

[Close]

BLAST of Carg18966-RA vs. ExPASy TrEMBL
Match: A0A5A7V0Y0 (Nuclear pore complex protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold242G001070 PE=3 SV=1)

HSP 1 Score: 718.0 bits (1852), Expect = 2.3e-203
Identity = 367/405 (90.62%), Postives = 386/405 (95.31%), Query Frame = 0


Query: 16   LTSVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPP-TIANVKDVSTKLLL 75
            + SVL RSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPP TIANVKDVSTKLLL
Sbjct: 681  IESVLLRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPPSTIANVKDVSTKLLL 740

Query: 76   RALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKE 135
            RALAHSNILFREFALISMWRIPS+PNGAHKLLSLLAEPLRQ+SETFSALEDNGVLENLKE
Sbjct: 741  RALAHSNILFREFALISMWRIPSMPNGAHKLLSLLAEPLRQHSETFSALEDNGVLENLKE 800

Query: 136  FEDWSEYFACDATYRNWLKIELENNEASSLDLSLEEKQRSIVAANETLDSSFSLLLRKES 195
            F+DWSEYF+CDATYRNWLKIELENNE  S++LSLEEKQRSIVAANETLDSS SLLLRKES
Sbjct: 801  FQDWSEYFSCDATYRNWLKIELENNEVPSMNLSLEEKQRSIVAANETLDSSLSLLLRKES 860

Query: 196  PWLDFTEDYVYEAMEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILN 255
            PWL F ED+++E+MEP+Y+ELHA VMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILN
Sbjct: 861  PWLGFAEDHLFESMEPVYLELHATVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILN 920

Query: 256  RKLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIMAAGFKGELRGYQAG 315
            R+LVVNVSIASGEGFCI+IVLRCLA PGDGLGH E NDGGILSGIMAAGFKGELRG+QAG
Sbjct: 921  RQLVVNVSIASGEGFCIEIVLRCLAAPGDGLGHREVNDGGILSGIMAAGFKGELRGFQAG 980

Query: 316  VTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCH 375
            VTLEVLRLDA  SNEDGSL+ PAAYIVQGLCRRCCLPEVILRCMQVSVALMELG EPKCH
Sbjct: 981  VTLEVLRLDALYSNEDGSLKDPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGFEPKCH 1040

Query: 376  DQLIELVASSESGFSDLFSQQQFEEFLILEREYTLRKMELGEPSS 420
            D LIELV +SESGFSDLFSQQQFEEFLILEREYTLRKME+GE SS
Sbjct: 1041 DNLIELVGNSESGFSDLFSQQQFEEFLILEREYTLRKMEVGELSS 1085

[Close]

BLAST of Carg18966-RA vs. ExPASy TrEMBL
Match: A0A5D3BXS6 (Nuclear pore complex protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001420 PE=3 SV=1)

HSP 1 Score: 718.0 bits (1852), Expect = 2.3e-203
Identity = 367/405 (90.62%), Postives = 386/405 (95.31%), Query Frame = 0


Query: 16   LTSVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPP-TIANVKDVSTKLLL 75
            + SVL RSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPP TIANVKDVSTKLLL
Sbjct: 677  IESVLLRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPPSTIANVKDVSTKLLL 736

Query: 76   RALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKE 135
            RALAHSNILFREFALISMWRIPS+PNGAHKLLSLLAEPLRQ+SETFSALEDNGVLENLKE
Sbjct: 737  RALAHSNILFREFALISMWRIPSMPNGAHKLLSLLAEPLRQHSETFSALEDNGVLENLKE 796

Query: 136  FEDWSEYFACDATYRNWLKIELENNEASSLDLSLEEKQRSIVAANETLDSSFSLLLRKES 195
            F+DWSEYF+CDATYRNWLKIELENNE  S++LSLEEKQRSIVAANETLDSS SLLLRKES
Sbjct: 797  FQDWSEYFSCDATYRNWLKIELENNEVPSMNLSLEEKQRSIVAANETLDSSLSLLLRKES 856

Query: 196  PWLDFTEDYVYEAMEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILN 255
            PWL F ED+++E+MEP+Y+ELHA VMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILN
Sbjct: 857  PWLGFAEDHLFESMEPVYLELHATVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILN 916

Query: 256  RKLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIMAAGFKGELRGYQAG 315
            R+LVVNVSIASGEGFCI+IVLRCLA PGDGLGH E NDGGILSGIMAAGFKGELRG+QAG
Sbjct: 917  RQLVVNVSIASGEGFCIEIVLRCLAAPGDGLGHREVNDGGILSGIMAAGFKGELRGFQAG 976

Query: 316  VTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCH 375
            VTLEVLRLDA  SNEDGSL+ PAAYIVQGLCRRCCLPEVILRCMQVSVALMELG EPKCH
Sbjct: 977  VTLEVLRLDALYSNEDGSLKDPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGFEPKCH 1036

Query: 376  DQLIELVASSESGFSDLFSQQQFEEFLILEREYTLRKMELGEPSS 420
            D LIELV +SESGFSDLFSQQQFEEFLILEREYTLRKME+GE SS
Sbjct: 1037 DNLIELVGNSESGFSDLFSQQQFEEFLILEREYTLRKMEVGELSS 1081

[Close]

BLAST of Carg18966-RA vs. ExPASy TrEMBL
Match: A0A1S3CGK5 (Nuclear pore complex protein OS=Cucumis melo OX=3656 GN=LOC103500671 PE=3 SV=1)

HSP 1 Score: 711.8 bits (1836), Expect = 1.6e-201
Identity = 364/405 (89.88%), Postives = 384/405 (94.81%), Query Frame = 0


Query: 16   LTSVLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPP-TIANVKDVSTKLLL 75
            + SVL RSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPP TIANVKDVSTKLLL
Sbjct: 678  IESVLLRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPPSTIANVKDVSTKLLL 737

Query: 76   RALAHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKE 135
            RALAHSNILFREFALISMWRIPS+PNGAHKLLSLLAEPLRQ+SETFSALEDNGVLENLKE
Sbjct: 738  RALAHSNILFREFALISMWRIPSMPNGAHKLLSLLAEPLRQHSETFSALEDNGVLENLKE 797

Query: 136  FEDWSEYFACDATYRNWLKIELENNEASSLDLSLEEKQRSIVAANETLDSSFSLLLRKES 195
            F+DWSEYF+CDATYRNWLKIELENNE  S++LSLEEKQRSIVAANE LDSS SLLLRKES
Sbjct: 798  FQDWSEYFSCDATYRNWLKIELENNEVPSMNLSLEEKQRSIVAANEALDSSLSLLLRKES 857

Query: 196  PWLDFTEDYVYEAMEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILN 255
            PWL F ED+++E+MEP+Y+ELHA VMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILN
Sbjct: 858  PWLGFAEDHLFESMEPVYLELHATVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILN 917

Query: 256  RKLVVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIMAAGFKGELRGYQAG 315
            R+LVVNVSIASGEGFCI+IVLRCLA PGDGLGH E NDGGILSGIMAAGFKGELRG+QAG
Sbjct: 918  RQLVVNVSIASGEGFCIEIVLRCLAAPGDGLGHREVNDGGILSGIMAAGFKGELRGFQAG 977

Query: 316  VTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCH 375
            VTLEVLRLDA  SNEDGSL+ PAAYIVQGLCR CCLPEVILRCMQVSVALMELG EPKCH
Sbjct: 978  VTLEVLRLDALYSNEDGSLKDPAAYIVQGLCRWCCLPEVILRCMQVSVALMELGFEPKCH 1037

Query: 376  DQLIELVASSESGFSDLFSQQQFEEFLILEREYTLRKMELGEPSS 420
            D LIELV +SESGFSDLFS+QQFEEFLILEREYTLRKME+GE SS
Sbjct: 1038 DNLIELVGNSESGFSDLFSEQQFEEFLILEREYTLRKMEVGELSS 1082

[Close]

BLAST of Carg18966-RA vs. TAIR 10
Match: AT3G14120.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore protein 84/107 (InterPro:IPR007252); Has 271 Blast hits to 268 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 69; Plants - 52; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). )

HSP 1 Score: 512.7 bits (1319), Expect = 2.8e-145
Identity = 258/402 (64.18%), Postives = 323/402 (80.35%), Query Frame = 0


Query: 19   VLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPP-TIANVKDVSTKLLLRAL 78
            VLSRSRE K+   D   D  EQHR QSLQKA+ +QWLCFTPP TI +VKDV++KLLLR+L
Sbjct: 677  VLSRSREIKLAKYDPSIDVAEQHRQQSLQKAIAIQWLCFTPPSTIKDVKDVTSKLLLRSL 736

Query: 79   AHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKEFED 138
             HSNILFREFALI+MWR+P+ P GAH LLS LAEPL+Q SE    LED  V ENL+EF+D
Sbjct: 737  MHSNILFREFALIAMWRVPATPVGAHTLLSYLAEPLKQLSENPDTLEDY-VSENLQEFQD 796

Query: 139  WSEYFACDATYRNWLKIELENNEASSLDLSLEEKQRSIVAANETLDSSFSLLLRKESPWL 198
            W+EY++CDA YRNWLK +LEN E +  +LS EE Q+++VAA ETLDSS SLLLR+++PW+
Sbjct: 797  WNEYYSCDAKYRNWLKFQLENAEVT--ELSEEENQKAVVAAKETLDSSLSLLLRQDNPWM 856

Query: 199  DFTEDYVYEAMEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILNRKL 258
             F ED+V+E+ E L++ELHA  MLCLPSGECL P+A  C  L SALYSSV+EE++L+R+L
Sbjct: 857  TFLEDHVFESEEYLFLELHATAMLCLPSGECLRPDATVCAALMSALYSSVSEEVVLDRQL 916

Query: 259  VVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIMAAGFKGELRGYQAGVTL 318
            +VNVSI+S + +CI++VLRCLA  GDGLG    NDGGILS + AAGFKGEL  +QAGVT+
Sbjct: 917  MVNVSISSRDSYCIEVVLRCLAIKGDGLGPHNANDGGILSAVAAAGFKGELTRFQAGVTM 976

Query: 319  EVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCHDQL 378
            ++ RLDAW S+++GSLE PA YIV+GLCRRCCLPE++LR MQVSV+LME G  P+ HD+L
Sbjct: 977  DISRLDAWYSSKEGSLETPATYIVRGLCRRCCLPELVLRSMQVSVSLMESGNPPEDHDEL 1036

Query: 379  IELVASSESGFSDLFSQQQFEEFLILEREYTLRKMELGEPSS 420
            IELVAS E+GF  LFS+QQ +EF++ EREY + ++EL E  S
Sbjct: 1037 IELVASDETGFLSLFSRQQLQEFMLFEREYRMSQLELQEELS 1075

[Close]

BLAST of Carg18966-RA vs. TAIR 10
Match: AT3G14120.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nuclear pore; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore protein 84/107 (InterPro:IPR007252). )

HSP 1 Score: 512.7 bits (1319), Expect = 2.8e-145
Identity = 258/402 (64.18%), Postives = 323/402 (80.35%), Query Frame = 0


Query: 19   VLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPP-TIANVKDVSTKLLLRAL 78
            VLSRSRE K+   D   D  EQHR QSLQKA+ +QWLCFTPP TI +VKDV++KLLLR+L
Sbjct: 698  VLSRSREIKLAKYDPSIDVAEQHRQQSLQKAIAIQWLCFTPPSTIKDVKDVTSKLLLRSL 757

Query: 79   AHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKEFED 138
             HSNILFREFALI+MWR+P+ P GAH LLS LAEPL+Q SE    LED  V ENL+EF+D
Sbjct: 758  MHSNILFREFALIAMWRVPATPVGAHTLLSYLAEPLKQLSENPDTLEDY-VSENLQEFQD 817

Query: 139  WSEYFACDATYRNWLKIELENNEASSLDLSLEEKQRSIVAANETLDSSFSLLLRKESPWL 198
            W+EY++CDA YRNWLK +LEN E +  +LS EE Q+++VAA ETLDSS SLLLR+++PW+
Sbjct: 818  WNEYYSCDAKYRNWLKFQLENAEVT--ELSEEENQKAVVAAKETLDSSLSLLLRQDNPWM 877

Query: 199  DFTEDYVYEAMEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILNRKL 258
             F ED+V+E+ E L++ELHA  MLCLPSGECL P+A  C  L SALYSSV+EE++L+R+L
Sbjct: 878  TFLEDHVFESEEYLFLELHATAMLCLPSGECLRPDATVCAALMSALYSSVSEEVVLDRQL 937

Query: 259  VVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIMAAGFKGELRGYQAGVTL 318
            +VNVSI+S + +CI++VLRCLA  GDGLG    NDGGILS + AAGFKGEL  +QAGVT+
Sbjct: 938  MVNVSISSRDSYCIEVVLRCLAIKGDGLGPHNANDGGILSAVAAAGFKGELTRFQAGVTM 997

Query: 319  EVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEVILRCMQVSVALMELGLEPKCHDQL 378
            ++ RLDAW S+++GSLE PA YIV+GLCRRCCLPE++LR MQVSV+LME G  P+ HD+L
Sbjct: 998  DISRLDAWYSSKEGSLETPATYIVRGLCRRCCLPELVLRSMQVSVSLMESGNPPEDHDEL 1057

Query: 379  IELVASSESGFSDLFSQQQFEEFLILEREYTLRKMELGEPSS 420
            IELVAS E+GF  LFS+QQ +EF++ EREY + ++EL E  S
Sbjct: 1058 IELVASDETGFLSLFSRQQLQEFMLFEREYRMSQLELQEELS 1096

[Close]

BLAST of Carg18966-RA vs. TAIR 10
Match: AT3G14120.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore protein 84/107 (InterPro:IPR007252); Has 5399 Blast hits to 5001 proteins in 612 species: Archae - 19; Bacteria - 730; Metazoa - 2186; Fungi - 823; Plants - 382; Viruses - 37; Other Eukaryotes - 1222 (source: NCBI BLink). )

HSP 1 Score: 499.2 bits (1284), Expect = 3.2e-141
Identity = 258/426 (60.56%), Postives = 323/426 (75.82%), Query Frame = 0


Query: 19   VLSRSRETKIGSSDKLSDAVEQHRLQSLQKAMVVQWLCFTPP-TIANVKDVSTKLLLRAL 78
            VLSRSRE K+   D   D  EQHR QSLQKA+ +QWLCFTPP TI +VKDV++KLLLR+L
Sbjct: 677  VLSRSREIKLAKYDPSIDVAEQHRQQSLQKAIAIQWLCFTPPSTIKDVKDVTSKLLLRSL 736

Query: 79   AHSNILFREFALISMWRIPSIPNGAHKLLSLLAEPLRQNSETFSALEDNGVLENLKEFED 138
             HSNILFREFALI+MWR+P+ P GAH LLS LAEPL+Q SE    LED  V ENL+EF+D
Sbjct: 737  MHSNILFREFALIAMWRVPATPVGAHTLLSYLAEPLKQLSENPDTLEDY-VSENLQEFQD 796

Query: 139  WSEYFACDATYRNWLKIELENNEASSLDLSLEEKQRSIVAANETLDSSFSLLLRKESPWL 198
            W+EY++CDA YRNWLK +LEN E +  +LS EE Q+++VAA ETLDSS SLLLR+++PW+
Sbjct: 797  WNEYYSCDAKYRNWLKFQLENAEVT--ELSEEENQKAVVAAKETLDSSLSLLLRQDNPWM 856

Query: 199  DFTEDYVYEAMEPLYIELHAVVMLCLPSGECLCPEAATCTTLTSALYSSVTEEIILNRKL 258
             F ED+V+E+ E L++ELHA  MLCLPSGECL P+A  C  L SALYSSV+EE++L+R+L
Sbjct: 857  TFLEDHVFESEEYLFLELHATAMLCLPSGECLRPDATVCAALMSALYSSVSEEVVLDRQL 916

Query: 259  VVNVSIASGEGFCIKIVLRCLATPGDGLGHCEGNDGGILSGIMAAGFKG----------- 318
            +VNVSI+S + +CI++VLRCLA  GDGLG    NDGGILS + AAGFKG           
Sbjct: 917  MVNVSISSRDSYCIEVVLRCLAIKGDGLGPHNANDGGILSAVAAAGFKGSDIYGTYFSFT 976

Query: 319  -------------ELRGYQAGVTLEVLRLDAWCSNEDGSLECPAAYIVQGLCRRCCLPEV 378
                         EL  +QAGVT+++ RLDAW S+++GSLE PA YIV+GLCRRCCLPE+
Sbjct: 977  YDLPPFSIEIWGCELTRFQAGVTMDISRLDAWYSSKEGSLETPATYIVRGLCRRCCLPEL 1036

Query: 379  ILRCMQVSVALMELGLEPKCHDQLIELVASSESGFSDLFSQQQFEEFLILEREYTLRKME 420
            +LR MQVSV+LME G  P+ HD+LIELVAS E+GF  LFS+QQ +EF++ EREY + ++E
Sbjct: 1037 VLRSMQVSVSLMESGNPPEDHDELIELVASDETGFLSLFSRQQLQEFMLFEREYRMSQLE 1096

The following BLAST results are available for this feature:

BLAST of Carg18966-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013971.1	1.9e-236	100.00	Nuclear pore complex protein, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6575429.1	2.0e-225	99.26	Nuclear pore complex protein 107, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_023549300.1	4.1e-223	98.52	nuclear pore complex protein NUP107 [Cucurbita pepo subsp. pepo]	[more]
XP_022954255.1	1.0e-221	98.02	nuclear pore complex protein NUP107 [Cucurbita moschata]	[more]
XP_022992068.1	2.3e-221	97.53	nuclear pore complex protein NUP107 [Cucurbita maxima]	[more]

BLAST of Carg18966-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L748	4.5e-140	60.56	Nuclear pore complex protein NUP107 OS=Arabidopsis thaliana OX=3702 GN=NUP107 PE...	[more]

BLAST of Carg18966-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GRY5	4.9e-222	98.02	Nuclear pore complex protein OS=Cucurbita moschata OX=3662 GN=LOC111456566 PE=3 ...	[more]
A0A6J1JY08	1.1e-221	97.53	Nuclear pore complex protein OS=Cucurbita maxima OX=3661 GN=LOC111488527 PE=3 SV...	[more]
A0A5A7V0Y0	2.3e-203	90.62	Nuclear pore complex protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3BXS6	2.3e-203	90.62	Nuclear pore complex protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3CGK5	1.6e-201	89.88	Nuclear pore complex protein OS=Cucumis melo OX=3656 GN=LOC103500671 PE=3 SV=1	[more]

BLAST of Carg18966-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G14120.2	2.8e-145	64.18	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nu...	[more]
AT3G14120.3	2.8e-145	64.18	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nu...	[more]
AT3G14120.1	3.2e-141	60.56	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nu...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.190.50		coord: 342..417 e-value: 2.3E-5 score: 26.1 coord: 39..211 e-value: 4.8E-5 score: 25.0
None	No IPR available	PANTHER	PTHR13003:SF3	NUCLEAR PORE COMPLEX PROTEIN	coord: 17..416
IPR007252	Nuclear pore protein 84/107	PANTHER	PTHR13003	NUP107-RELATED	coord: 17..416

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg18966	Carg18966	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18966-RA:8	Carg18966-RA:8	exon
Carg18966-RA:7	Carg18966-RA:7	exon
Carg18966-RA:6	Carg18966-RA:6	exon
Carg18966-RA:5	Carg18966-RA:5	exon
Carg18966-RA:4	Carg18966-RA:4	exon
Carg18966-RA:3	Carg18966-RA:3	exon
Carg18966-RA:2	Carg18966-RA:2	exon
Carg18966-RA:1	Carg18966-RA:1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18966-RA:three_prime_utr	Carg18966-RA:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18966-RA:cds	Carg18966-RA:cds_8	CDS
Carg18966-RA:cds	Carg18966-RA:cds_7	CDS
Carg18966-RA:cds	Carg18966-RA:cds_6	CDS
Carg18966-RA:cds	Carg18966-RA:cds_5	CDS
Carg18966-RA:cds	Carg18966-RA:cds_4	CDS
Carg18966-RA:cds	Carg18966-RA:cds_3	CDS
Carg18966-RA:cds	Carg18966-RA:cds_2	CDS
Carg18966-RA:cds	Carg18966-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg18966-RA	Carg18966-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0006606	protein import into nucleus
cellular_component	GO:0005643	nuclear pore
cellular_component	GO:0031965	nuclear membrane
cellular_component	GO:0031080	nuclear pore outer ring
molecular_function	GO:0017056	structural constituent of nuclear pore