Carg18656-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18656-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAuxin response factor
LocationCarg_Chr12: 12002823 .. 12006428 (-)
Sequence length705
RNA-Seq ExpressionCarg18656-RA
SyntenyCarg18656-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGCGGACAAAAGTCCAGAGAAGAGTGGAGAAACAAGAGAGGATGCAGCCATGGAGGGGAGGGTTGAATCCAAAACCTGGTATATGCGGATAAGAAGAGCAAGTAGAAAAGGGGTTCACAGGAGAAAGAGCTTGAAAAGGAAGGTGATCTGGAGCGTGCAGATTCAGAGAAGGTGGAATGGATTAGAAGAACAGTCGAAAAAGCGAGTGATGGAAGATCAAAAGGAGGATGTGGGGAGGAGTAAGAAGAGGGGGTGAGAATGGCGGAAACGATGACGCATTCGATCTCTGCAGAAGAGGAAGTCGACGCTTGAGACGACAGTTTCCGCAACCTGAGTAGCTCCACAGAAAAGTGGAAGTGTTCTCTCTTTTCCCTTTTCTTCACTCGAGATTTTTTAAACTAATTTATACTGCCGCTATTATATATATTCTTCAACAAAATACAGAAACTAATACATTTAACTTCGCCTTATCTGCGTAACTAAAAAATACCATTTCTCCTAATAATATTTAAATATTTATTACTTATTGAAATGAAACTCTATTACTTACGGGAGAAACGCTTTTTTTACCGCTTTTTTTTTTGTTTTAACTCTATTAAATTTTTTTGAAGGTATACGTTTTAAATTTCAATTCATTAATTAATTATATATTTAAAAATTATTTAAATTTTCTACCCATACCCCTCCATAGATAAAAAAAAAAAAAAATACGTTTTGTTTTTTTTTAAGCCCTAGCTGTGAATCATCGTTGGATTCTAGAGGAGAACGAAATATCATTAAGGGTGTGGAAACCTTCTAACATACACGTTTTAAAAACCTTGGAAGCTTGAAAGGGAAAGTCCAAAGAGGGCCATTACAAATGATATTAGACAAACACCGAGCGTGGAAACCTTTATTTAGCAAACGTGATGGGACACTAGGCGGGTGTGGAAACCTGATGGGACACTGAGCCTGTGTGGAAATCTTTCCCTAATAAATGCCTAGCTATCCTGTAAGAGTGGGCTTGGACCGTTACACTAGCCCAGAAGCCTCTCTAGCAAACGTGATGGGACACCGAGTGGGTGAGCCAGACATCGGGCGGGTGTGGAAACTTTTCTCTAGAAAACGTGATGGGAAGTCCGAAAGGAAAAGGCCAAAAAAGACGCGATTGGGGCAGCCGCACGTTCCTCCATAGGTAGAGTTGAAGATTGATTAAGCGGAGTTGTGGGCGTTCCTCCACTGCCTTGTGGTTGTATGTAAAGATAGCTCATTTGTTTCATGTGCGTGCTCGCTATTTGCGCTGTCAAGGACTTGCGCGTGAAGCTAGCTTGCTACCATGAGCTGTGACAGCTCTGCACCCACTGCAAGCCAAAACCCAAAAACCAAAAACTATGCACTTCCACCATTCCGACCATTATGTGTCCAAAAACAGCCATTTGTTCCGAGAATCTCGGGTCTCTAACTTCTTATCACCCACTTCCTACTCTTTTCATTGTTTCTTGACATCAACACATGCACATAACATAATATAATATAATATCACATAATGTCACTAAACTATATAGGTATTTCATACCACTTGTAACATCTTATACCTAAGATTCAGCTTAAGATTTGAAATCTAGATTCAACATTTAATTATCTACGCATTTTTCTGCCTCCGCAATATGACCATGTTACTTACTTGTTGCTTTTAATAATTAAGATTAATATCCCTTGTTGGATTATGTAAACCCCAGGTCTCATCGGCTAATTTAGGGAATGATCATGCGTTTATAAACAAAGAATACTCTCTCCGTTGGTGTGAGGCCTTTTGGGGAAACCTAAAGCAAAGTCATATGGGACAACTTATGCTCAAATGGGACAATATCATACCATTGTGGAGAGTCACTGAAAAACACAGTGCAACTTCAAACAAAATATGCTAACCGTACTCTATTAGAATAATAGGTAGGAACAGTAAAATGTCGAGTCATCAGGTGCTGAATCCAAATTTCAAATTTTGGACATGATGAGACATTGAGGTCAGTCGTTTGATAGCTAAGGCGGTGGCTAGGGGCGCGGTGGTGTGTTGTAAAACCCATGTGTGTTATCCAGTTGAGGAAGAAAGGGAAAGCAAATTAATTAATTGATTGAACCCCACCTTTTAATGGTGCAACAAAAGGGCGGCCATCCATCCACCGCACATCATCCTTTGTACGGTAAGTGGATGCATGTTAAAAAACCAAGTTTCGCACCACATTTAAAGATGTGGTTGAATATCACCTGGATCCTGACCTCTTAGTGGTTCACTTATCAGCGTCATCTTTAAGCGAGGGCATGATCAAGGGTCAGGTTTTAGTGAATGAGGTCAAAGCCATGGCGCCCACAATTACATCTTTAAATAAATGGCGACGACCCATGTGCAAAGCTCCTGCTTTTGCGGCTATTTTACTCTGTTTTCCTACAACCCAAAAGTGAAAGCTTTTTGTGTCTTGTTTTCAGATTCGTGACGAAAACAGAAAATGGTTTGTTGAACATTCCATAGTGCGGGGTGGCCCAGCAGTCATGGCGAGGGCGGAGAGCGTAAGGCCACGCCCACGCCCACGCCCACGCCCACGCCCAAGCCCAGCACTCACTATGCAAGCGGCGTTGTCAAAAGTTCCAACTCCCTTGCATTATTCATCTTATCAATCATTCCCTTTCTTTTATTTGTGGAGTAATTAATAACATAAAGACTTAAAAATCTTTTTTATTTCTATTGTCTACCATTCTTCCATTTCATGTCGGTTTCTGTCCCCCTTTCTCTCTTCTTCTCAAACCTTTAAGCTATTTAGCTTTAAGCTTTATCTTAGGCCTTCGATTTCCCGGAGTCAAGTCTGTGTCATCACCACCTTCATCCCCTCGACAGTTTCGCTATCCACTTTTCTTTCTCTTTTTTCTTCACAACCCAAACTGGATCACTATATTCCCTTTGGGGTTCCTCCGCTCTACCTCGCCTTCTTCGCTTCTTTTCCTTCAGCGAACCCTGTTGTTGTTTCCAGAGGCGCCGGGACTGGCATGGGTGTGTTCTTGCCTTTACGGAGCTAGTGATCAGATTTCCTTTGGATTTGTGGGTTATATCCTACAGTATGAAAGCTCCCCCAAATGGGTTTGTCCCCAATTCTGGAGAAGGTAACTTATCTTCCCTATAATGTTCTTTAAGAACACGATTGTTGAGAGATTCTGAAGTTGTGTATATTTCTGACATACTAAAAATCTGCTTAATTAAGCTCTTAGATCATGAGATTTGTTAAAACCTTTAGTAGTATTTAGTTGTGATGCCTGTTTGTTTGTCTGAGAGGAACAGGTGAAAGGAAGAATATTAATTCTGAGTTATGGCATGCTTGTGCTGGACCTCTTGTTTCGTTACCGCCAGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGTGAACAAGTATGTACTTCATGACTCAATTTATGTGAACATATGGATGGATAGTGGTTTGTGATGGATTCTTTTTTAAACCTTTCAGGTTGCAGCATCCATGAACAAGGAGACTGATTTCATTCCAAACTACCCTAACCTTCCTTCAAAGTTGGTGTGCATGCTCCATAATGTCATATTACACGTATGA

mRNA sequence

ATGCAAGCGGACAAAAGTCCAGAGAAGAGTGGAGAAACAAGAGAGGATGCAGCCATGGAGGGGAGGGTTGAATCCAAAACCTGGTATATGCGGATAAGAAGAGCAAGTAGAAAAGGGGTTCACAGGAGAAAGAGCTTGAAAAGGAAGGTGATCTGGAGCGTGCAGATTCAGAGAAGGTGGAATGGATTAGAAGAACAGTCGAAAAAGCGAGTGATGGAAGATCAAAAGGAGGATGTGGGGAGGACGTCATCTTTAAGCGAGGGCATGATCAAGGGTCAGATTCGTGACGAAAACAGAAAATGGTTTGTTGAACATTCCATAGTGCGGGGTGGCCCAGCAGTCATGGCGAGGGCGGAGAGCAGGCGCCGGGACTGGCATGGGTGTGTTCTTGCCTTTACGGAGCTAGTGATCAGATTTCCTTTGGATTTGTGGGTTATATCCTACAGTATGAAAGCTCCCCCAAATGGGTTTGTCCCCAATTCTGGAGAAGGTGAAAGGAAGAATATTAATTCTGAGTTATGGCATGCTTGTGCTGGACCTCTTGTTTCGTTACCGCCAGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGTGAACAAGTTGCAGCATCCATGAACAAGGAGACTGATTTCATTCCAAACTACCCTAACCTTCCTTCAAAGTTGGTGTGCATGCTCCATAATGTCATATTACACGTATGA

Coding sequence (CDS)

ATGCAAGCGGACAAAAGTCCAGAGAAGAGTGGAGAAACAAGAGAGGATGCAGCCATGGAGGGGAGGGTTGAATCCAAAACCTGGTATATGCGGATAAGAAGAGCAAGTAGAAAAGGGGTTCACAGGAGAAAGAGCTTGAAAAGGAAGGTGATCTGGAGCGTGCAGATTCAGAGAAGGTGGAATGGATTAGAAGAACAGTCGAAAAAGCGAGTGATGGAAGATCAAAAGGAGGATGTGGGGAGGACGTCATCTTTAAGCGAGGGCATGATCAAGGGTCAGATTCGTGACGAAAACAGAAAATGGTTTGTTGAACATTCCATAGTGCGGGGTGGCCCAGCAGTCATGGCGAGGGCGGAGAGCAGGCGCCGGGACTGGCATGGGTGTGTTCTTGCCTTTACGGAGCTAGTGATCAGATTTCCTTTGGATTTGTGGGTTATATCCTACAGTATGAAAGCTCCCCCAAATGGGTTTGTCCCCAATTCTGGAGAAGGTGAAAGGAAGAATATTAATTCTGAGTTATGGCATGCTTGTGCTGGACCTCTTGTTTCGTTACCGCCAGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGTGAACAAGTTGCAGCATCCATGAACAAGGAGACTGATTTCATTCCAAACTACCCTAACCTTCCTTCAAAGTTGGTGTGCATGCTCCATAATGTCATATTACACGTATGA

Protein sequence

MQADKSPEKSGETREDAAMEGRVESKTWYMRIRRASRKGVHRRKSLKRKVIWSVQIQRRWNGLEEQSKKRVMEDQKEDVGRTSSLSEGMIKGQIRDENRKWFVEHSIVRGGPAVMARAESRRRDWHGCVLAFTELVIRFPLDLWVISYSMKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILHV
Homology
[Close]
BLAST of Carg18656-RA vs. NCBI nr
Match: KAG7021363.1 (Auxin response factor 19, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 477.6 bits (1228), Expect = 6.0e-131
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0 

Query: 1   MQADKSPEKSGETREDAAMEGRVESKTWYMRIRRASRKGVHRRKSLKRKVIWSVQIQRRW 60
           MQADKSPEKSGETREDAAMEGRVESKTWYMRIRRASRKGVHRRKSLKRKVIWSVQIQRRW
Sbjct: 1   MQADKSPEKSGETREDAAMEGRVESKTWYMRIRRASRKGVHRRKSLKRKVIWSVQIQRRW 60

Query: 61  NGLEEQSKKRVMEDQKEDVGRTSSLSEGMIKGQIRDENRKWFVEHSIVRGGPAVMARAES 120
           NGLEEQSKKRVMEDQKEDVGRTSSLSEGMIKGQIRDENRKWFVEHSIVRGGPAVMARAES
Sbjct: 61  NGLEEQSKKRVMEDQKEDVGRTSSLSEGMIKGQIRDENRKWFVEHSIVRGGPAVMARAES 120

Query: 121 RRRDWHGCVLAFTELVIRFPLDLWVISYSMKAPPNGFVPNSGEGERKNINSELWHACAGP 180
           RRRDWHGCVLAFTELVIRFPLDLWVISYSMKAPPNGFVPNSGEGERKNINSELWHACAGP
Sbjct: 121 RRRDWHGCVLAFTELVIRFPLDLWVISYSMKAPPNGFVPNSGEGERKNINSELWHACAGP 180

Query: 181 LVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILHV 235
           LVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILHV
Sbjct: 181 LVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILHV 234

[Close]
BLAST of Carg18656-RA vs. NCBI nr
Match: TYK10829.1 (auxin response factor 19 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 205.3 bits (521), Expect = 5.8e-49
Identity = 96/108 (88.89%), Postives = 101/108 (93.52%), Query Frame = 0 

Query: 126 HGCVLAFTELVIRFPLDLWVISYSMKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLP 185
           HG VLA TE+VI FPLDL V+SY+MKAP NGF+ NSGEGERKNINSELWHACAGPLVSLP
Sbjct: 58  HGFVLAGTEVVIGFPLDLSVLSYNMKAPSNGFLANSGEGERKNINSELWHACAGPLVSLP 117

Query: 186 PVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH 234
           PVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKL+CMLHNV LH
Sbjct: 118 PVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLICMLHNVTLH 165

[Close]
BLAST of Carg18656-RA vs. NCBI nr
Match: XP_022937523.1 (auxin response factor 19-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 183.0 bits (463), Expect = 3.1e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 150 MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKE 209
           MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKE
Sbjct: 1   MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKE 60

Query: 210 TDFIPNYPNLPSKLVCMLHNVILH 234
           TDFIPNYPNLPSKLVCMLHNVILH
Sbjct: 61  TDFIPNYPNLPSKLVCMLHNVILH 84

[Close]
BLAST of Carg18656-RA vs. NCBI nr
Match: XP_023538355.1 (auxin response factor 19-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.0 bits (463), Expect = 3.1e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 150 MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKE 209
           MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKE
Sbjct: 1   MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKE 60

Query: 210 TDFIPNYPNLPSKLVCMLHNVILH 234
           TDFIPNYPNLPSKLVCMLHNVILH
Sbjct: 61  TDFIPNYPNLPSKLVCMLHNVILH 84

[Close]
BLAST of Carg18656-RA vs. NCBI nr
Match: XP_022965394.1 (auxin response factor 19-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 183.0 bits (463), Expect = 3.1e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 150 MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKE 209
           MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKE
Sbjct: 1   MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKE 60

Query: 210 TDFIPNYPNLPSKLVCMLHNVILH 234
           TDFIPNYPNLPSKLVCMLHNVILH
Sbjct: 61  TDFIPNYPNLPSKLVCMLHNVILH 84

[Close]
BLAST of Carg18656-RA vs. ExPASy Swiss-Prot
Match: Q8RYC8 (Auxin response factor 19 OS=Arabidopsis thaliana OX=3702 GN=ARF19 PE=1 SV=2)

HSP 1 Score: 160.2 bits (404), Expect = 2.8e-38
Identity = 71/84 (84.52%), Postives = 79/84 (94.05%), Query Frame = 0 

Query: 150 MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKE 209
           MKAP NGF+P+S EGE+K INS+LWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASM K+
Sbjct: 1   MKAPSNGFLPSSNEGEKKPINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQ 60

Query: 210 TDFIPNYPNLPSKLVCMLHNVILH 234
           TDFIPNYPNLPSKL+C+LH+V LH
Sbjct: 61  TDFIPNYPNLPSKLICLLHSVTLH 84

[Close]
BLAST of Carg18656-RA vs. ExPASy Swiss-Prot
Match: P93022 (Auxin response factor 7 OS=Arabidopsis thaliana OX=3702 GN=ARF7 PE=1 SV=2)

HSP 1 Score: 151.4 bits (381), Expect = 1.3e-35
Identity = 70/85 (82.35%), Postives = 76/85 (89.41%), Query Frame = 0 

Query: 150 MKAP-PNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNK 209
           MKAP  NG  PN  EGER+NINSELWHACAGPL+SLPP GSLVVYFPQGHSEQVAASM K
Sbjct: 1   MKAPSSNGVSPNPVEGERRNINSELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQK 60

Query: 210 ETDFIPNYPNLPSKLVCMLHNVILH 234
           +TDFIP+YPNLPSKL+CMLHNV L+
Sbjct: 61  QTDFIPSYPNLPSKLICMLHNVTLN 85

[Close]
BLAST of Carg18656-RA vs. ExPASy Swiss-Prot
Match: A2YAA5 (Auxin response factor 16 OS=Oryza sativa subsp. indica OX=39946 GN=ARF16 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-29
Identity = 61/79 (77.22%), Postives = 68/79 (86.08%), Query Frame = 0 

Query: 155 NGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIP 214
           +G  P  GEGE+K INSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASM+KE D IP
Sbjct: 7   SGVSPAPGEGEKKAINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMHKELDNIP 66

Query: 215 NYPNLPSKLVCMLHNVILH 234
            YP+LPSKL+C L ++ LH
Sbjct: 67  GYPSLPSKLICKLLSLTLH 85

[Close]
BLAST of Carg18656-RA vs. ExPASy Swiss-Prot
Match: A3B9A0 (Auxin response factor 16 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF16 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-29
Identity = 61/79 (77.22%), Postives = 68/79 (86.08%), Query Frame = 0 

Query: 155 NGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIP 214
           +G  P  GEGE+K INSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASM+KE D IP
Sbjct: 7   SGVSPAPGEGEKKAINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMHKELDNIP 66

Query: 215 NYPNLPSKLVCMLHNVILH 234
            YP+LPSKL+C L ++ LH
Sbjct: 67  GYPSLPSKLICKLLSLTLH 85

[Close]
BLAST of Carg18656-RA vs. ExPASy Swiss-Prot
Match: Q6Z2W3 (Auxin response factor 5 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF5 PE=2 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-27
Identity = 60/74 (81.08%), Postives = 65/74 (87.84%), Query Frame = 0 

Query: 163 EGERK--NINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETD-FIPNYPNL 222
           EGERK   INSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASM K+ D  +P+YPNL
Sbjct: 33  EGERKAAAINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKDVDAHVPSYPNL 92

Query: 223 PSKLVCMLHNVILH 234
           PSKL+C+LH V LH
Sbjct: 93  PSKLICLLHGVNLH 106

[Close]
BLAST of Carg18656-RA vs. ExPASy TrEMBL
Match: A0A5D3CKR6 (Auxin response factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001480 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 2.8e-49
Identity = 96/108 (88.89%), Postives = 101/108 (93.52%), Query Frame = 0 

Query: 126 HGCVLAFTELVIRFPLDLWVISYSMKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLP 185
           HG VLA TE+VI FPLDL V+SY+MKAP NGF+ NSGEGERKNINSELWHACAGPLVSLP
Sbjct: 58  HGFVLAGTEVVIGFPLDLSVLSYNMKAPSNGFLANSGEGERKNINSELWHACAGPLVSLP 117

Query: 186 PVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH 234
           PVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKL+CMLHNV LH
Sbjct: 118 PVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLICMLHNVTLH 165

[Close]
BLAST of Carg18656-RA vs. ExPASy TrEMBL
Match: A0A6J1HQV9 (Auxin response factor OS=Cucurbita maxima OX=3661 GN=LOC111465314 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.5e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 150 MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKE 209
           MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKE
Sbjct: 1   MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKE 60

Query: 210 TDFIPNYPNLPSKLVCMLHNVILH 234
           TDFIPNYPNLPSKLVCMLHNVILH
Sbjct: 61  TDFIPNYPNLPSKLVCMLHNVILH 84

[Close]
BLAST of Carg18656-RA vs. ExPASy TrEMBL
Match: A0A6J1FG93 (Auxin response factor OS=Cucurbita moschata OX=3662 GN=LOC111443911 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.5e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 150 MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKE 209
           MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKE
Sbjct: 1   MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKE 60

Query: 210 TDFIPNYPNLPSKLVCMLHNVILH 234
           TDFIPNYPNLPSKLVCMLHNVILH
Sbjct: 61  TDFIPNYPNLPSKLVCMLHNVILH 84

[Close]
BLAST of Carg18656-RA vs. ExPASy TrEMBL
Match: A0A6J1HNK0 (Auxin response factor OS=Cucurbita maxima OX=3661 GN=LOC111465314 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 4.8e-41
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 150 MKAPPNGFVPNSGE--GERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMN 209
           MKAPPNGFVPNSGE  GERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMN
Sbjct: 1   MKAPPNGFVPNSGEGTGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMN 60

Query: 210 KETDFIPNYPNLPSKLVCMLHNVILH 234
           KETDFIPNYPNLPSKLVCMLHNVILH
Sbjct: 61  KETDFIPNYPNLPSKLVCMLHNVILH 86

[Close]
BLAST of Carg18656-RA vs. ExPASy TrEMBL
Match: A0A6J1HNS5 (Auxin response factor OS=Cucurbita maxima OX=3661 GN=LOC111465314 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 4.8e-41
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 150 MKAPPNGFVPNSGE--GERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMN 209
           MKAPPNGFVPNSGE  GERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMN
Sbjct: 1   MKAPPNGFVPNSGEGTGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMN 60

Query: 210 KETDFIPNYPNLPSKLVCMLHNVILH 234
           KETDFIPNYPNLPSKLVCMLHNVILH
Sbjct: 61  KETDFIPNYPNLPSKLVCMLHNVILH 86

[Close]
BLAST of Carg18656-RA vs. TAIR 10
Match: AT1G19220.1 (auxin response factor 19 )

HSP 1 Score: 160.2 bits (404), Expect = 2.0e-39
Identity = 71/84 (84.52%), Postives = 79/84 (94.05%), Query Frame = 0 

Query: 150 MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKE 209
           MKAP NGF+P+S EGE+K INS+LWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASM K+
Sbjct: 1   MKAPSNGFLPSSNEGEKKPINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQ 60

Query: 210 TDFIPNYPNLPSKLVCMLHNVILH 234
           TDFIPNYPNLPSKL+C+LH+V LH
Sbjct: 61  TDFIPNYPNLPSKLICLLHSVTLH 84

[Close]
BLAST of Carg18656-RA vs. TAIR 10
Match: AT5G20730.1 (Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related )

HSP 1 Score: 151.4 bits (381), Expect = 9.2e-37
Identity = 70/85 (82.35%), Postives = 76/85 (89.41%), Query Frame = 0 

Query: 150 MKAP-PNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNK 209
           MKAP  NG  PN  EGER+NINSELWHACAGPL+SLPP GSLVVYFPQGHSEQVAASM K
Sbjct: 1   MKAPSSNGVSPNPVEGERRNINSELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQK 60

Query: 210 ETDFIPNYPNLPSKLVCMLHNVILH 234
           +TDFIP+YPNLPSKL+CMLHNV L+
Sbjct: 61  QTDFIPSYPNLPSKLICMLHNVTLN 85

[Close]
BLAST of Carg18656-RA vs. TAIR 10
Match: AT5G20730.2 (Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related )

HSP 1 Score: 151.4 bits (381), Expect = 9.2e-37
Identity = 70/85 (82.35%), Postives = 76/85 (89.41%), Query Frame = 0 

Query: 150 MKAP-PNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNK 209
           MKAP  NG  PN  EGER+NINSELWHACAGPL+SLPP GSLVVYFPQGHSEQVAASM K
Sbjct: 1   MKAPSSNGVSPNPVEGERRNINSELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQK 60

Query: 210 ETDFIPNYPNLPSKLVCMLHNVILH 234
           +TDFIP+YPNLPSKL+CMLHNV L+
Sbjct: 61  QTDFIPSYPNLPSKLICMLHNVTLN 85

[Close]
BLAST of Carg18656-RA vs. TAIR 10
Match: AT5G20730.3 (Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related )

HSP 1 Score: 151.4 bits (381), Expect = 9.2e-37
Identity = 70/85 (82.35%), Postives = 76/85 (89.41%), Query Frame = 0 

Query: 150 MKAP-PNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNK 209
           MKAP  NG  PN  EGER+NINSELWHACAGPL+SLPP GSLVVYFPQGHSEQVAASM K
Sbjct: 1   MKAPSSNGVSPNPVEGERRNINSELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQK 60

Query: 210 ETDFIPNYPNLPSKLVCMLHNVILH 234
           +TDFIP+YPNLPSKL+CMLHNV L+
Sbjct: 61  QTDFIPSYPNLPSKLICMLHNVTLN 85

[Close]
BLAST of Carg18656-RA vs. TAIR 10
Match: AT1G30330.1 (auxin response factor 6 )

HSP 1 Score: 126.3 bits (316), Expect = 3.2e-29
Identity = 59/85 (69.41%), Postives = 67/85 (78.82%), Query Frame = 0 

Query: 150 MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKE 209
           M+    GF P   EGE++ +NSELWHACAGPLVSLPPVGS VVYFPQGHSEQVAAS NKE
Sbjct: 1   MRLSSAGFNPQPHEGEKRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKE 60

Query: 210 TD-FIPNYPNLPSKLVCMLHNVILH 234
            D  IPNYP+L  +L+C LHNV +H
Sbjct: 61  VDAHIPNYPSLHPQLICQLHNVTMH 85

The following BLAST results are available for this feature:
BLAST of Carg18656-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021363.16.0e-131100.00Auxin response factor 19, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
TYK10829.15.8e-4988.89auxin response factor 19 isoform X2 [Cucumis melo var. makuwa][more]
XP_022937523.13.1e-42100.00auxin response factor 19-like isoform X2 [Cucurbita moschata][more]
XP_023538355.13.1e-42100.00auxin response factor 19-like isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022965394.13.1e-42100.00auxin response factor 19-like isoform X2 [Cucurbita maxima][more]
BLAST of Carg18656-RA vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8RYC82.8e-3884.52Auxin response factor 19 OS=Arabidopsis thaliana OX=3702 GN=ARF19 PE=1 SV=2[more]
P930221.3e-3582.35Auxin response factor 7 OS=Arabidopsis thaliana OX=3702 GN=ARF7 PE=1 SV=2[more]
A2YAA51.1e-2977.22Auxin response factor 16 OS=Oryza sativa subsp. indica OX=39946 GN=ARF16 PE=2 SV... [more]
A3B9A01.1e-2977.22Auxin response factor 16 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF16 PE=2 ... [more]
Q6Z2W31.3e-2781.08Auxin response factor 5 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF5 PE=2 SV... [more]
BLAST of Carg18656-RA vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CKR62.8e-4988.89Auxin response factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold33... [more]
A0A6J1HQV91.5e-42100.00Auxin response factor OS=Cucurbita maxima OX=3661 GN=LOC111465314 PE=3 SV=1[more]
A0A6J1FG931.5e-42100.00Auxin response factor OS=Cucurbita moschata OX=3662 GN=LOC111443911 PE=3 SV=1[more]
A0A6J1HNK04.8e-4197.67Auxin response factor OS=Cucurbita maxima OX=3661 GN=LOC111465314 PE=3 SV=1[more]
A0A6J1HNS54.8e-4197.67Auxin response factor OS=Cucurbita maxima OX=3661 GN=LOC111465314 PE=3 SV=1[more]
BLAST of Carg18656-RA vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G19220.12.0e-3984.52auxin response factor 19 [more]
AT5G20730.19.2e-3782.35Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-relat... [more]
AT5G20730.29.2e-3782.35Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-relat... [more]
AT5G20730.39.2e-3782.35Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-relat... [more]
AT1G30330.13.2e-2969.41auxin response factor 6 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..85
NoneNo IPR availablePANTHERPTHR31384:SF126AUXIN RESPONSE FACTORcoord: 150..233
IPR044835Auxin response factorPANTHERPTHR31384AUXIN RESPONSE FACTOR 4-RELATEDcoord: 150..233

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg18656Carg18656gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg18656-RA:6Carg18656-RA:6exon
Carg18656-RA:5Carg18656-RA:5exon
Carg18656-RA:4Carg18656-RA:4exon
Carg18656-RA:3Carg18656-RA:3exon
Carg18656-RA:2Carg18656-RA:2exon
Carg18656-RA:1Carg18656-RA:1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg18656-RA:cdsCarg18656-RA:cds_6CDS
Carg18656-RA:cdsCarg18656-RA:cds_5CDS
Carg18656-RA:cdsCarg18656-RA:cds_4CDS
Carg18656-RA:cdsCarg18656-RA:cds_3CDS
Carg18656-RA:cdsCarg18656-RA:cds_2CDS
Carg18656-RA:cdsCarg18656-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg18656-RACarg18656-RA-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009725 response to hormone
biological_process GO:0009734 auxin-activated signaling pathway
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding