Carg18549-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AAATATATTGCGAAAAGCTGAGTAATTAGTGCTTGATTCCTTGTGTGGATTCCATCTTCTAGTGACAGCTGAGCCTCCCTTCCTCACCCACGCTGTTGTTGCTTTACACATCCGCTTTCTGTCGTCTCTCTGCCTTTTTCAGTTGCCATTCCCATTTATCCGAGCTGAACTACAGGTGGATGTCCCATTGTTTACGGAACTACCTCCGCTACCTCCTCCGACGGACCTCTTTCAACGCTATTTTCAATCTTGTATGTATTTTTGTATCTAATGCTTTCTTGTTTATCTATATTTATGTAGATTTTCGACCGAGGCTTTCGGAGTTTCGAATCTCTTTTTTAGAGTATTATTCTGTGCTTCCTGATGCATTTTTCTGTGTTCAGATCCAAGATGGTCACGTTGCAAGTGGCGCGACCGCTGGTTCACATGAATGAATACCGGCCGTTGATCTCCTCATCTTTGGGGAGGTTGAAGCTGGTGAACGTTGCTGTGAACAATGCGATTGGATTGAAGTGGAGTTGTGGAGGATGTCGGTTCTGTTGCGATGCTGTTGCTACTGGTTTTTTCCAACCATTTAAAGCGTTGACGAACAATTGCTCTGCGATTCACGGTACTTAATTTTTTAAAATCGCGTTTGGTTCTGTTTATGAAGACTAACAAATTCATGTAAATCAAAGAATGTTTAATAGTTTTCATTCCGGATTAATATTTTTGAACCCGCCAATTTGAAGTTGCGGAAATTATATTGGTAAGCAATATCTTGTACTTGAATCAATCAGTCTTAGGTTTAAAACTAAATGCGTTTTGGCTTGAATTTTTTTTATTCCCAGTATTCCCAGTAAGACATGAATTTTTCTTTTCCTTCTGTCCCTATAAAACATCCGATTAATTACCATCTGGATCATTGGTGCCATCAATTAGGTAATTGTTCGTATTCAATAGATGTTAGTTGTGCCTTTGGAGAAAGGTAAAACACAAAATTACTATTTTCGTATCTTTTGTGTAGTTCAAAGGCAAGGCTGATGCATACCAAATTGTTTATTGGTATATTACTTCAAATATAGTTTCTTAGCTTGACTTTACAGGGTCATGACTCATTATTAGCCGAGCTCTAATTTTGTTTACTGAATTTTGAAACTACTTGACTCATCATGACTCATTAGTTTACTGAATTTTGAAACTACTTGGGTACTCTAATTTTGTCCAACCTTTTCATAATTAGGTAAAGGTTGCCATGAGACCTCAACTGGTGGGAAGTCGACAAATATCGTCTGGCATGATTGCCCCGTCGGGAAGCCTCAAAGAGAAAAGTTGATTCAGCAGAAAGGCTGTGTCATATGGATAACTGGTCTCAGTGGTTCAGGTTAGTCCTTGTGTTTTCCAACTGGTAACTGATCTTATTTCTTGTTGAATTTTGAGGACCATCATCACTATCTCCATTATAACTGGTATCATTCCTTCTATGTGATTTTGGCCTTTATTTTGCTCAGAAACTTTTATCTCAAATGCCCGTCACTTAATTTTTTCGCTTTCTATCCTCGTTTGGTTTCTTTTTTTAATCAGAAGTTTGTAAGACTTATTTCACTGGCCAGATTGCAGGATAGATCATCTGAATTTTTTATGATTGCCCGTATGCAGTTTTTAAATAATGATCTTTTTGTATTATGGAGTCTACAAGTCATCTACAAGTTATGTGACTTAGTTGTTCGTTTCATGGAGAAGAGTTCATGAAGCAATACACGATTAAGAGACTAAATTATAGACTAATTGGCTAGACACAGTAGACTTTGTTGTTGTCAACTCTAATCAACTCCGTATAGAGTTAGAGTAGTTTACCATGAAAAGAGGGAAAGTAGACTGAAATAAGGAAATAAAAAATGCAGCTGCTTGTCAAACGATACATGTTTATTGTTTATATTTCAAAAGGTATGAGTAAATTTTTTGGTCATAACTAATTATCATTCTCATGATCAATCATATGAACTTTTCCTGAAAAAGAGATTCCATTATCATCAAACTGGCATTTTACGTTGTACGGTGGTTCTGGTACAATTAAGAGACTGTTGTTTAATATGCTTATGTATAGAATGATCCTTTCACTGTAGTTACTCTCTCCCTCTCTCTCACCTAGGGCTCTAATTATAGGAAAAAGCACTTTGGCATGTGCATTAAGCCAAGGCTTACATTCAAGAAGAAAGCTGACCTACGTCCTTGATGGTGACAATATTAGGCATGGTCTAAACAGTGATCTTAGTTTTGAATCCAAAGATCGAGCGGAAAACATAAGGAGAATTGGTGGGTGGCCTTCTCTATCAGATGAAATATTTCCCTTGACATTTCTTGCATCACCCAGATTTCGTGATATTAATCAAGATGGTCAACAGGTGAGGTAGCAAGCCTATTCGCAGATGCTGGGATTATTTGTATTGCTAGTTTAATATCCCCTTTCCGGAAGGACAGAGATGCCTGTCGAGCCCTGTTGGCAGAAGGCGATTTCATTGAGGTATGTTATACTAATTCTTGTGTTGCATATTATCAGGGCATAGTTTTATTTCCGGTAACTGAGTTCACAACCAGGGCAAGGCATTAGAGATCTGGACATTGATAAGATGGTCATGTCTTCATTGTTGACCGCTGGGTTCTGCAATATTTTTACAGGTTTTCCTTGATGTGCCACTTAAGGTATGTGAAGCCCGGGATCCAAAGGGTCTGTATAAACTGTCCAGAGCAGGAAAGATTCAAGGTACTATTTTGGTTTTCCCCAATATTTGGTTTCACCTGATCCTTCCTCTTAGGATTTGGTAGGTATTCCAAAATTTTCCATCCGTTTCTCTTTTTTGGATGAAACCTTTCTGCCAATCTTGTCTGTAAATATGTGGCTGATTTCTAGGTGGGAATTCAAGTTGCCAATTTTCACGGATGTAGCTGTAGTTGTTGTAATGGAAGATTTATCGTGCTTTGTTTTTGTATACATATATTTCCACAACTGATATCAGTTCTCAATTTAGAGTTGATCTTTGCCATCTATTTTCAGGATTCACGGGGATAGATGATCCATATGAAGAACCATTAAATTGCGAGGTGTGTGTACTTTGAACATACATTTTTGTTTCCTTTTGTTTTCATACGGTCAAAGGATTACATATATTTCAATGCTAACAATTATTTGCCGGCTGTTGAACGAATTGACTACTGTGTTCATCAAACATGAACTAATGAAGAAACATAAATGGACTCACACTGGTCTTTGTTGGCAGATTTTATTGCAATACAAAGAAGGAATCTGCTCGTCCCCTAATGAAATGGCGGAAGAAGTAATTTCATATTTAGAAGAGAGAGGGTACCTGCAAAGT AAATATATTGCGAAAAGCTGAGTAATTAGTGCTTGATTCCTTGTGTGGATTCCATCTTCTAGTGACAGCTGAGCCTCCCTTCCTCACCCACGCTGTTGTTGCTTTACACATCCGCTTTCTGTCGTCTCTCTGCCTTTTTCAGTTGCCATTCCCATTTATCCGAGCTGAACTACAGGTGGATGTCCCATTGTTTACGGAACTACCTCCGCTACCTCCTCCGACGGACCTCTTTCAACGCTATTTTCAATCTTTGGAGTTGTGGAGGATGTCGGTTCTGTTGCGATGCTGTTGCTACTGGTTTTTTCCAACCATTTAAAGCGTTGACGAACAATTGCTCTGCGATTCACGGTAAAGGTTGCCATGAGACCTCAACTGGTGGGAAGTCGACAAATATCGTCTGGCATGATTGCCCCGTCGGGAAGCCTCAAAGAGAAAAGTTGATTCAGCAGAAAGGCTGTGTCATATGGATAACTGGTCTCAGTGGTTCAGGAAAAAGCACTTTGGCATGTGCATTAAGCCAAGGCTTACATTCAAGAAGAAAGCTGACCTACGTCCTTGATGGTGACAATATTAGGCATGGTCTAAACAGTGATCTTAGTTTTGAATCCAAAGATCGAGCGGAAAACATAAGGAGAATTGGTGGGTGGCCTTCTCTATCAGATGAAATATTTCCCTTGACATTTCTTGCATCACCCAGATTTCGTGATATTAATCAAGATGGTCAACAGGTAGCAAGCCTATTCGCAGATGCTGGGATTATTTGTATTGCTAGTTTAATATCCCCTTTCCGGAAGGACAGAGATGCCTGTCGAGCCCTGTTGGCAGAAGGCGATTTCATTGAGGTTTTCCTTGATGTGCCACTTAAGGTATGTGAAGCCCGGGATCCAAAGGGTCTGTATAAACTGTCCAGAGCAGGAAAGATTCAAGGATTCACGGGGATAGATGATCCATATGAAGAACCATTAAATTGCGAGATTTTATTGCAATACAAAGAAGGAATCTGCTCGTCCCCTAATGAAATGGCGGAAGAAGTAATTTCATATTTAGAAGAGAGAGGGTACCTGCAAAGT ATGTCCCATTGTTTACGGAACTACCTCCGCTACCTCCTCCGACGGACCTCTTTCAACGCTATTTTCAATCTTTGGAGTTGTGGAGGATGTCGGTTCTGTTGCGATGCTGTTGCTACTGGTTTTTTCCAACCATTTAAAGCGTTGACGAACAATTGCTCTGCGATTCACGGTAAAGGTTGCCATGAGACCTCAACTGGTGGGAAGTCGACAAATATCGTCTGGCATGATTGCCCCGTCGGGAAGCCTCAAAGAGAAAAGTTGATTCAGCAGAAAGGCTGTGTCATATGGATAACTGGTCTCAGTGGTTCAGGAAAAAGCACTTTGGCATGTGCATTAAGCCAAGGCTTACATTCAAGAAGAAAGCTGACCTACGTCCTTGATGGTGACAATATTAGGCATGGTCTAAACAGTGATCTTAGTTTTGAATCCAAAGATCGAGCGGAAAACATAAGGAGAATTGGTGGGTGGCCTTCTCTATCAGATGAAATATTTCCCTTGACATTTCTTGCATCACCCAGATTTCGTGATATTAATCAAGATGGTCAACAGGTAGCAAGCCTATTCGCAGATGCTGGGATTATTTGTATTGCTAGTTTAATATCCCCTTTCCGGAAGGACAGAGATGCCTGTCGAGCCCTGTTGGCAGAAGGCGATTTCATTGAGGTTTTCCTTGATGTGCCACTTAAGGTATGTGAAGCCCGGGATCCAAAGGGTCTGTATAAACTGTCCAGAGCAGGAAAGATTCAAGGATTCACGGGGATAGATGATCCATATGAAGAACCATTAAATTGCGAGATTTTATTGCAATACAAAGAAGGAATCTGCTCGTCCCCTAATGAAATGGCGGAAGAAGTAATTTCATATTTAGAAGAGAGAGGGTACCTGCAAAGT MSHCLRNYLRYLLRRTSFNAIFNLWSCGGCRFCCDAVATGFFQPFKALTNNCSAIHGKGCHETSTGGKSTNIVWHDCPVGKPQREKLIQQKGCVIWITGLSGSGKSTLACALSQGLHSRRKLTYVLDGDNIRHGLNSDLSFESKDRAENIRRIGGWPSLSDEIFPLTFLASPRFRDINQDGQQVASLFADAGIICIASLISPFRKDRDACRALLAEGDFIEVFLDVPLKVCEARDPKGLYKLSRAGKIQGFTGIDDPYEEPLNCEILLQYKEGICSSPNEMAEEVISYLEERGYLQS Homology
BLAST of Carg18549-RA vs. NCBI nr
Match: XP_023517094.1 (adenylyl-sulfate kinase 3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 502.7 bits (1293), Expect = 2.2e-138 Identity = 247/279 (88.53%), Postives = 248/279 (88.89%), Query Frame = 0
BLAST of Carg18549-RA vs. NCBI nr
Match: KAG6594977.1 (Adenylyl-sulfate kinase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 502.7 bits (1293), Expect = 2.2e-138 Identity = 247/279 (88.53%), Postives = 248/279 (88.89%), Query Frame = 0
BLAST of Carg18549-RA vs. NCBI nr
Match: XP_023003777.1 (adenylyl-sulfate kinase 3-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 497.7 bits (1280), Expect = 7.1e-137 Identity = 244/279 (87.46%), Postives = 247/279 (88.53%), Query Frame = 0
BLAST of Carg18549-RA vs. NCBI nr
Match: XP_022963439.1 (adenylyl-sulfate kinase 3-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 490.0 bits (1260), Expect = 1.5e-134 Identity = 243/279 (87.10%), Postives = 245/279 (87.81%), Query Frame = 0
BLAST of Carg18549-RA vs. NCBI nr
Match: XP_008440390.1 (PREDICTED: adenylyl-sulfate kinase 3 [Cucumis melo] >KAA0036416.1 adenylyl-sulfate kinase 3 [Cucumis melo var. makuwa] >TYK12812.1 adenylyl-sulfate kinase 3 [Cucumis melo var. makuwa]) HSP 1 Score: 460.7 bits (1184), Expect = 9.7e-126 Identity = 228/279 (81.72%), Postives = 237/279 (84.95%), Query Frame = 0
BLAST of Carg18549-RA vs. ExPASy Swiss-Prot
Match: O49204 (Adenylyl-sulfate kinase, chloroplastic OS=Catharanthus roseus OX=4058 GN=AKN PE=2 SV=1) HSP 1 Score: 331.6 bits (849), Expect = 8.9e-90 Identity = 161/248 (64.92%), Postives = 192/248 (77.42%), Query Frame = 0
BLAST of Carg18549-RA vs. ExPASy Swiss-Prot
Match: Q43295 (Adenylyl-sulfate kinase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APK1 PE=1 SV=1) HSP 1 Score: 308.9 bits (790), Expect = 6.2e-83 Identity = 151/234 (64.53%), Postives = 179/234 (76.50%), Query Frame = 0
BLAST of Carg18549-RA vs. ExPASy Swiss-Prot
Match: Q9SRW7 (Adenylyl-sulfate kinase 3 OS=Arabidopsis thaliana OX=3702 GN=APK3 PE=1 SV=1) HSP 1 Score: 307.8 bits (787), Expect = 1.4e-82 Identity = 146/234 (62.39%), Postives = 180/234 (76.92%), Query Frame = 0
BLAST of Carg18549-RA vs. ExPASy Swiss-Prot
Match: Q84JF0 (Adenylyl-sulfate kinase 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APK4 PE=1 SV=1) HSP 1 Score: 303.9 bits (777), Expect = 2.0e-81 Identity = 155/271 (57.20%), Postives = 191/271 (70.48%), Query Frame = 0
BLAST of Carg18549-RA vs. ExPASy Swiss-Prot
Match: O49196 (Adenylyl-sulfate kinase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APK2 PE=1 SV=1) HSP 1 Score: 291.2 bits (744), Expect = 1.3e-77 Identity = 137/230 (59.57%), Postives = 174/230 (75.65%), Query Frame = 0
BLAST of Carg18549-RA vs. ExPASy TrEMBL
Match: A0A6J1KNK1 (Adenylyl-sulfate kinase OS=Cucurbita maxima OX=3661 GN=LOC111497257 PE=3 SV=1) HSP 1 Score: 497.7 bits (1280), Expect = 3.4e-137 Identity = 244/279 (87.46%), Postives = 247/279 (88.53%), Query Frame = 0
BLAST of Carg18549-RA vs. ExPASy TrEMBL
Match: A0A6J1HK41 (Adenylyl-sulfate kinase OS=Cucurbita moschata OX=3662 GN=LOC111463644 PE=3 SV=1) HSP 1 Score: 490.0 bits (1260), Expect = 7.2e-135 Identity = 243/279 (87.10%), Postives = 245/279 (87.81%), Query Frame = 0
BLAST of Carg18549-RA vs. ExPASy TrEMBL
Match: A0A5D3CN90 (Adenylyl-sulfate kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004040 PE=3 SV=1) HSP 1 Score: 460.7 bits (1184), Expect = 4.7e-126 Identity = 228/279 (81.72%), Postives = 237/279 (84.95%), Query Frame = 0
BLAST of Carg18549-RA vs. ExPASy TrEMBL
Match: A0A1S3B0L2 (Adenylyl-sulfate kinase OS=Cucumis melo OX=3656 GN=LOC103484852 PE=3 SV=1) HSP 1 Score: 460.7 bits (1184), Expect = 4.7e-126 Identity = 228/279 (81.72%), Postives = 237/279 (84.95%), Query Frame = 0
BLAST of Carg18549-RA vs. ExPASy TrEMBL
Match: A0A0A0KFY6 (Adenylyl-sulfate kinase OS=Cucumis sativus OX=3659 GN=Csa_6G495640 PE=3 SV=1) HSP 1 Score: 456.1 bits (1172), Expect = 1.2e-124 Identity = 225/279 (80.65%), Postives = 235/279 (84.23%), Query Frame = 0
BLAST of Carg18549-RA vs. TAIR 10
Match: AT2G14750.1 (APS kinase ) HSP 1 Score: 308.9 bits (790), Expect = 4.4e-84 Identity = 151/234 (64.53%), Postives = 179/234 (76.50%), Query Frame = 0
BLAST of Carg18549-RA vs. TAIR 10
Match: AT3G03900.1 (adenosine-5'-phosphosulfate (APS) kinase 3 ) HSP 1 Score: 307.8 bits (787), Expect = 9.7e-84 Identity = 146/234 (62.39%), Postives = 180/234 (76.92%), Query Frame = 0
BLAST of Carg18549-RA vs. TAIR 10
Match: AT5G67520.1 (adenosine-5'-phosphosulfate (APS) kinase 4 ) HSP 1 Score: 303.9 bits (777), Expect = 1.4e-82 Identity = 155/271 (57.20%), Postives = 191/271 (70.48%), Query Frame = 0
BLAST of Carg18549-RA vs. TAIR 10
Match: AT4G39940.1 (APS-kinase 2 ) HSP 1 Score: 291.2 bits (744), Expect = 9.4e-79 Identity = 137/230 (59.57%), Postives = 174/230 (75.65%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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