Carg18533-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18533-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Phytosulfokine-beta
Location	Carg_Chr07: 2842322 .. 2842690 (+)
Sequence length	267
RNA-Seq Expression	Carg18533-RA
Synteny	Carg18533-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTAAATTCATCACCTTTCTCTGCCTAATCTTCCTCCTCCTCCTCTCCAACAGCCCGTCTGCCTACGCTGCCCGCCCCGTTCCCACCGTTTCATCCGATGCACCAGCTACCCAAATCCCAAATCAGGTTCGTTAACAAATTTATCAATAACTTATCAACTTAAACTTTTTAGTTCCGGTAAACAATTACGAACCGATATTGACATGTTTTTTAATTGGGTTTTTATAGGGGTTGGAAACAGATCAAAGTGATAGTGAGATGATGGATGAGAGGTGCCATGGAGTTGGGGAAGAAGAGTGCTTGATCAGACGAACTCTAGCTGCCCACTTAGATTATGTGTATACTCAAAAGCATAAGCCATAG

mRNA sequence

ATGGCTTCTAAATTCATCACCTTTCTCTGCCTAATCTTCCTCCTCCTCCTCTCCAACAGCCCGTCTGCCTACGCTGCCCGCCCCGTTCCCACCGTTTCATCCGATGCACCAGCTACCCAAATCCCAAATCAGGGGTTGGAAACAGATCAAAGTGATAGTGAGATGATGGATGAGAGGTGCCATGGAGTTGGGGAAGAAGAGTGCTTGATCAGACGAACTCTAGCTGCCCACTTAGATTATGTGTATACTCAAAAGCATAAGCCATAG

Coding sequence (CDS)

ATGGCTTCTAAATTCATCACCTTTCTCTGCCTAATCTTCCTCCTCCTCCTCTCCAACAGCCCGTCTGCCTACGCTGCCCGCCCCGTTCCCACCGTTTCATCCGATGCACCAGCTACCCAAATCCCAAATCAGGGGTTGGAAACAGATCAAAGTGATAGTGAGATGATGGATGAGAGGTGCCATGGAGTTGGGGAAGAAGAGTGCTTGATCAGACGAACTCTAGCTGCCCACTTAGATTATGTGTATACTCAAAAGCATAAGCCATAG

Protein sequence

MASKFITFLCLIFLLLLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMDERCHGVGEEECLIRRTLAAHLDYVYTQKHKP

Homology

[Close]

BLAST of Carg18533-RA vs. NCBI nr
Match: KAG7026920.1 (Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.0 bits (445), Expect = 1.4e-40
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASKFITFLCLIFLLLLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMDERC 60
          MASKFITFLCLIFLLLLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMDERC
Sbjct: 1  MASKFITFLCLIFLLLLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMDERC 60

Query: 61 HGVGEEECLIRRTLAAHLDYVYTQKHKP 89
          HGVGEEECLIRRTLAAHLDYVYTQKHKP
Sbjct: 61 HGVGEEECLIRRTLAAHLDYVYTQKHKP 88

[Close]

BLAST of Carg18533-RA vs. NCBI nr
Match: KAG6594959.1 (Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171.4 bits (433), Expect = 3.5e-39
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MASKFITFLCLIF-LLLLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMDER 60
          MASKFITFLCLIF LLLLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMDER
Sbjct: 1  MASKFITFLCLIFLLLLLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMDER 60

Query: 61 CHGVGEEECLIRRTLAAHLDYVYTQKHKP 89
          CHGVGEEECLIRRTLAAHLDYVYTQKHKP
Sbjct: 61 CHGVGEEECLIRRTLAAHLDYVYTQKHKP 89

[Close]

BLAST of Carg18533-RA vs. NCBI nr
Match: XP_023003386.1 (phytosulfokines-like [Cucurbita maxima])

HSP 1 Score: 168.3 bits (425), Expect = 2.9e-38
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MASKFITFLCLIF-LLLLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMDER 60
          MASKFITFLCLIF LLLLSNSPSAYAARPVPTVSSDAPATQIPNQ LETDQSDSEMMDER
Sbjct: 1  MASKFITFLCLIFLLLLLSNSPSAYAARPVPTVSSDAPATQIPNQELETDQSDSEMMDER 60

Query: 61 CHGVGEEECLIRRTLAAHLDYVYTQKHKP 89
          CHGVGEEECLIRRTLAAHLDYVYTQKHKP
Sbjct: 61 CHGVGEEECLIRRTLAAHLDYVYTQKHKP 89

[Close]

BLAST of Carg18533-RA vs. NCBI nr
Match: XP_022963144.1 (phytosulfokines 3-like [Cucurbita moschata])

HSP 1 Score: 165.6 bits (418), Expect = 1.9e-37
Identity = 85/89 (95.51%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MASKFITFLCLIFLL-LLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMDER 60
          M SKFITFLCLIFLL LLSNSPSAYAARPVPTVSSDAPATQI NQGLETD+SDSEMMDER
Sbjct: 1  MGSKFITFLCLIFLLHLLSNSPSAYAARPVPTVSSDAPATQISNQGLETDESDSEMMDER 60

Query: 61 CHGVGEEECLIRRTLAAHLDYVYTQKHKP 89
          CHGVGEEECLIRRTLAAHLDYVYTQKHKP
Sbjct: 61 CHGVGEEECLIRRTLAAHLDYVYTQKHKP 89

[Close]

BLAST of Carg18533-RA vs. NCBI nr
Match: XP_023518620.1 (phytosulfokines-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.9 bits (416), Expect = 3.2e-37
Identity = 86/90 (95.56%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MASKFITFLCLI--FLLLLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMDE 60
          MASKFITFL LI   LLLLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMDE
Sbjct: 1  MASKFITFLSLISLLLLLLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMDE 60

Query: 61 RCHGVGEEECLIRRTLAAHLDYVYTQKHKP 89
          RCHGVGEEECLIRRTLAAHLDYVYTQKHKP
Sbjct: 61 RCHGVGEEECLIRRTLAAHLDYVYTQKHKP 90

[Close]

BLAST of Carg18533-RA vs. ExPASy Swiss-Prot
Match: Q9FS10 (Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-10
Identity = 41/88 (46.59%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 1  MASKFITFLCLIFLLLLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMDERC 60
          M+SK IT L +  L  LS    A AARP+    S      IP           ++ DE C
Sbjct: 1  MSSKAITLLLIALLFSLS---LAQAARPLQPADSTKSVHVIP----------EKVHDEAC 60

Query: 61 HGVGEEECLIRRTLAAHLDYVYTQKHKP 89
           GVGEEECL+RRTL AH+DY+YTQ H P
Sbjct: 61 EGVGEEECLMRRTLTAHVDYIYTQDHNP 75

[Close]

BLAST of Carg18533-RA vs. ExPASy Swiss-Prot
Match: Q9M2Y0 (Phytosulfokines 3 OS=Arabidopsis thaliana OX=3702 GN=PSK3 PE=2 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-09
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 8  FLCLIFLLLLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMDERCHGVGEEE 67
          F  +  + LL  S   YAAR  PT +     T +  +    +    ++ +E C+G+GEEE
Sbjct: 4  FTTIFIMALLLCSTLTYAARLTPTTT-----TALSRENSVKEIEGDKVEEESCNGIGEEE 63

Query: 68 CLIRRTLAAHLDYVYTQKHKP 89
          CLIRR+L  H DY+YTQ HKP
Sbjct: 64 CLIRRSLVLHTDYIYTQNHKP 79

[Close]

BLAST of Carg18533-RA vs. ExPASy Swiss-Prot
Match: Q9FEB4 (Phytosulfokines 5 OS=Arabidopsis thaliana OX=3702 GN=PSK5 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-08
Identity = 41/86 (47.67%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 4  KFITFLCLIFLLLLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMDERCHGV 63
          KF TFLC+I LLL S    A +AR  PT       +  P +         E++   C GV
Sbjct: 3  KFTTFLCIIALLLCSTLTHA-SARLNPT-------SVYPEENSFKKLEQGEVI---CEGV 62

Query: 64 GEEEC-LIRRTLAAHLDYVYTQKHKP 89
          GEEEC LIRRTL AH DY+YTQ H P
Sbjct: 63 GEEECFLIRRTLVAHTDYIYTQNHNP 77

[Close]

BLAST of Carg18533-RA vs. ExPASy Swiss-Prot
Match: Q9AR88 (Phytosulfokines 4 OS=Oryza sativa subsp. japonica OX=39947 GN=PSK4 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-07
Identity = 34/78 (43.59%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 9  LCLIFLLLLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMDERCHGVGEEEC 68
          L ++ +   S++  A A RP PT S D  A Q   Q        SE+      G GEEEC
Sbjct: 12 LAVLLIFAASSATVAMAGRPTPTTSLDEEAAQAAAQ--------SEIGGGCKEGEGEEEC 71

Query: 69 LIRRTLAAHLDYVYTQKH 87
          L RRTL AH DY+YTQ+H
Sbjct: 72 LARRTLTAHTDYIYTQQH 81

[Close]

BLAST of Carg18533-RA vs. ExPASy Swiss-Prot
Match: O81003 (Phytosulfokines 2 OS=Arabidopsis thaliana OX=3702 GN=PSK2 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.1e-07
Identity = 33/80 (41.25%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 11 LIFLLLLSNSPSAYAARPVPTVSSDAPATQIP---NQGLETDQSDSEMMDERCHGVGEEE 70
          L+ + LL  S     ARP P +S        P    + +E    D  M+DE C G  +E+
Sbjct: 7  LLTIALLLCSTLMCTARPEPAISISITTAADPCNMEKKIEGKLDDMHMVDENC-GADDED 66

Query: 71 CLIRRTLAAHLDYVYTQKHK 88
          CL+RRTL AH DY+YTQK K
Sbjct: 67 CLMRRTLVAHTDYIYTQKKK 85

[Close]

BLAST of Carg18533-RA vs. ExPASy TrEMBL
Match: A0A6J1KP44 (Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111497011 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-38
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MASKFITFLCLIF-LLLLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMDER 60
          MASKFITFLCLIF LLLLSNSPSAYAARPVPTVSSDAPATQIPNQ LETDQSDSEMMDER
Sbjct: 1  MASKFITFLCLIFLLLLLSNSPSAYAARPVPTVSSDAPATQIPNQELETDQSDSEMMDER 60

Query: 61 CHGVGEEECLIRRTLAAHLDYVYTQKHKP 89
          CHGVGEEECLIRRTLAAHLDYVYTQKHKP
Sbjct: 61 CHGVGEEECLIRRTLAAHLDYVYTQKHKP 89

[Close]

BLAST of Carg18533-RA vs. ExPASy TrEMBL
Match: A0A6J1HJ90 (Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111463441 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 9.2e-38
Identity = 85/89 (95.51%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MASKFITFLCLIFLL-LLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMDER 60
          M SKFITFLCLIFLL LLSNSPSAYAARPVPTVSSDAPATQI NQGLETD+SDSEMMDER
Sbjct: 1  MGSKFITFLCLIFLLHLLSNSPSAYAARPVPTVSSDAPATQISNQGLETDESDSEMMDER 60

Query: 61 CHGVGEEECLIRRTLAAHLDYVYTQKHKP 89
          CHGVGEEECLIRRTLAAHLDYVYTQKHKP
Sbjct: 61 CHGVGEEECLIRRTLAAHLDYVYTQKHKP 89

[Close]

BLAST of Carg18533-RA vs. ExPASy TrEMBL
Match: A0A6J1ILJ9 (Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111478122 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.3e-20
Identity = 58/91 (63.74%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 1  MASKFITFLCLIFLLLL---SNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMD 60
          M SKF +F CLIFLLLL   +  P A+AARP P  +S      +P QGL+ +Q+DSE MD
Sbjct: 1  MPSKFFSFRCLIFLLLLLLCNRLPPAHAARPAPVFAS------LPTQGLDENQTDSENMD 60

Query: 61 ERCHGVGEEECLIRRTLAAHLDYVYTQKHKP 89
          E+C GV EEECLIRRTLAAHLDYVYTQKH P
Sbjct: 61 EKCSGVSEEECLIRRTLAAHLDYVYTQKHTP 85

[Close]

BLAST of Carg18533-RA vs. ExPASy TrEMBL
Match: A0A5A7T4W2 (Phytosulfokine-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003840 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.6e-20
Identity = 60/90 (66.67%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 1  MASKFITFLCLIFLLLLSNSPSAYAARPVPTVSSDAPATQIPNQGL--ETDQSDSEMMDE 60
          M SKF +FL +I LLL    P AYAARP P     A  T IP+QGL  E+ QSD EM DE
Sbjct: 1  MPSKFFSFLFIILLLLHLYRPLAYAARPAP-----AAPTAIPSQGLAGESKQSDGEMTDE 60

Query: 61 RCHGVGEEECLIRRTLAAHLDYVYTQKHKP 89
           C GVGEEECL+RRTLAAHLDYVYTQKHKP
Sbjct: 61 NCDGVGEEECLMRRTLAAHLDYVYTQKHKP 85

[Close]

BLAST of Carg18533-RA vs. ExPASy TrEMBL
Match: A0A0A0KLK0 (Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_6G495850 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.5e-19
Identity = 61/91 (67.03%), Postives = 65/91 (71.43%), Query Frame = 0


Query: 1  MASKFITFLCLIFLLLLSNSPSAYAARPVPTVSSDAPATQIPNQGL--ETDQSDSEM-MD 60
          M SKF +FL + FLLLL + P AYAARP P     A  T IP Q L  E  QSD EM MD
Sbjct: 1  MPSKFFSFLFIFFLLLLLHRPLAYAARPTP-----AAPTTIPTQELAEELKQSDGEMVMD 60

Query: 61 ERCHGVGEEECLIRRTLAAHLDYVYTQKHKP 89
          E C GVGEEECL+RRTLAAHLDYVYTQKHKP
Sbjct: 61 ENCDGVGEEECLMRRTLAAHLDYVYTQKHKP 86

[Close]

BLAST of Carg18533-RA vs. TAIR 10
Match: AT3G49780.1 (phytosulfokine 4 precursor )

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-10
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 8  FLCLIFLLLLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMDERCHGVGEEE 67
          F  +  + LL  S   YAAR  PT +     T +  +    +    ++ +E C+G+GEEE
Sbjct: 4  FTTIFIMALLLCSTLTYAARLTPTTT-----TALSRENSVKEIEGDKVEEESCNGIGEEE 63

Query: 68 CLIRRTLAAHLDYVYTQKHKP 89
          CLIRR+L  H DY+YTQ HKP
Sbjct: 64 CLIRRSLVLHTDYIYTQNHKP 79

[Close]

BLAST of Carg18533-RA vs. TAIR 10
Match: AT5G65870.1 (phytosulfokine 5 precursor )

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-09
Identity = 41/86 (47.67%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 4  KFITFLCLIFLLLLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMDERCHGV 63
          KF TFLC+I LLL S    A +AR  PT       +  P +         E++   C GV
Sbjct: 3  KFTTFLCIIALLLCSTLTHA-SARLNPT-------SVYPEENSFKKLEQGEVI---CEGV 62

Query: 64 GEEEC-LIRRTLAAHLDYVYTQKHKP 89
          GEEEC LIRRTL AH DY+YTQ H P
Sbjct: 63 GEEECFLIRRTLVAHTDYIYTQNHNP 77

[Close]

BLAST of Carg18533-RA vs. TAIR 10
Match: AT2G22860.1 (phytosulfokine 2 precursor )

HSP 1 Score: 54.3 bits (129), Expect = 5.8e-08
Identity = 33/80 (41.25%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 11 LIFLLLLSNSPSAYAARPVPTVSSDAPATQIP---NQGLETDQSDSEMMDERCHGVGEEE 70
          L+ + LL  S     ARP P +S        P    + +E    D  M+DE C G  +E+
Sbjct: 7  LLTIALLLCSTLMCTARPEPAISISITTAADPCNMEKKIEGKLDDMHMVDENC-GADDED 66

Query: 71 CLIRRTLAAHLDYVYTQKHK 88
          CL+RRTL AH DY+YTQK K
Sbjct: 67 CLMRRTLVAHTDYIYTQKKK 85

[Close]

BLAST of Carg18533-RA vs. TAIR 10
Match: AT4G37720.1 (phytosulfokine 6 precursor )

HSP 1 Score: 47.8 bits (112), Expect = 5.4e-06
Identity = 28/73 (38.36%), Postives = 39/73 (53.42%), Query Frame = 0


Query: 15 LLLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSD-SEMMDERCHGVGEEECLIRRT 74
          LLL  +    +ARP P   +    +      LE  +S   E+  E C    +E+CL+RRT
Sbjct: 12 LLLCATMLTCSARPEPAYFASFTTSPADTLSLEMIESKLHEVAGESCDKEDDEDCLVRRT 71

Query: 75 LAAHLDYVYTQKH 87
          L AHLDY+YT K+
Sbjct: 72 LTAHLDYIYTHKN 84

[Close]

BLAST of Carg18533-RA vs. TAIR 10
Match: AT1G13590.1 (phytosulfokine 1 precursor )

HSP 1 Score: 41.6 bits (96), Expect = 3.9e-04
Identity = 31/84 (36.90%), Postives = 45/84 (53.57%), Query Frame = 0


Query: 6  ITFLCLIFLLLLSNS----PSAYA-ARPVPTVSSDAPATQIPNQGLETDQSDSEMMDERC 65
          I F  L+ LL +++S       +A  +P PT    A +T+    G+E   SDS       
Sbjct: 10 IFFFTLVLLLSMASSVILREDGFAPPKPSPTTHEKA-STKGDRDGVECKNSDS------- 69

Query: 66 HGVGEEECLIRRTLAAHLDYVYTQ 85
              EEECL+++T+AAH DY+YTQ
Sbjct: 70 ----EEECLVKKTVAAHTDYIYTQ 81

The following BLAST results are available for this feature:

BLAST of Carg18533-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026920.1	1.4e-40	100.00	Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6594959.1	3.5e-39	98.88	Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023003386.1	2.9e-38	97.75	phytosulfokines-like [Cucurbita maxima]	[more]
XP_022963144.1	1.9e-37	95.51	phytosulfokines 3-like [Cucurbita moschata]	[more]
XP_023518620.1	3.2e-37	95.56	phytosulfokines-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg18533-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FS10	1.6e-10	46.59	Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1	[more]
Q9M2Y0	1.7e-09	40.74	Phytosulfokines 3 OS=Arabidopsis thaliana OX=3702 GN=PSK3 PE=2 SV=2	[more]
Q9FEB4	1.5e-08	47.67	Phytosulfokines 5 OS=Arabidopsis thaliana OX=3702 GN=PSK5 PE=2 SV=1	[more]
Q9AR88	1.6e-07	43.59	Phytosulfokines 4 OS=Oryza sativa subsp. japonica OX=39947 GN=PSK4 PE=1 SV=1	[more]
O81003	8.1e-07	41.25	Phytosulfokines 2 OS=Arabidopsis thaliana OX=3702 GN=PSK2 PE=2 SV=1	[more]

BLAST of Carg18533-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KP44	1.4e-38	97.75	Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111497011 PE=3 SV=1	[more]
A0A6J1HJ90	9.2e-38	95.51	Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111463441 PE=3 SV=1	[more]
A0A6J1ILJ9	2.3e-20	63.74	Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111478122 PE=3 SV=1	[more]
A0A5A7T4W2	6.6e-20	66.67	Phytosulfokine-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G...	[more]
A0A0A0KLK0	2.5e-19	67.03	Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_6G495850 PE=3 SV=1	[more]

BLAST of Carg18533-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49780.1	1.2e-10	40.74	phytosulfokine 4 precursor	[more]
AT5G65870.1	1.0e-09	47.67	phytosulfokine 5 precursor	[more]
AT2G22860.1	5.8e-08	41.25	phytosulfokine 2 precursor	[more]
AT4G37720.1	5.4e-06	38.36	phytosulfokine 6 precursor	[more]
AT1G13590.1	3.9e-04	36.90	phytosulfokine 1 precursor	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 14..87 e-value: 6.1E-15 score: 56.0
IPR009438	Phytosulfokine	PANTHER	PTHR33285	PHYTOSULFOKINES 3	coord: 1..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..50
None	No IPR available	PANTHER	PTHR33285:SF28	PHYTOSULFOKINES-LIKE	coord: 1..88

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg18533	Carg18533	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18533-RA:1	Carg18533-RA:1	exon
Carg18533-RA:2	Carg18533-RA:2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18533-RA:cds	Carg18533-RA:cds	CDS
Carg18533-RA:cds	Carg18533-RA:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg18533-RA	Carg18533-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell population proliferation
biological_process	GO:0030154	cell differentiation
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0008083	growth factor activity