Carg18115-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18115-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 11588660 .. 11591439 (+)
Sequence length570
RNA-Seq ExpressionCarg18115-RA
SyntenyCarg18115-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCCACTGAGCCTTGAGGCTGCTGGACTTGCTTCTGTATGTGACCTTTTTCGATTATTTAGAGTGATTTTTGCAGCAATTTTGCTAAATATTGGAATATATTTGTGGAAGAGTTACTATTATTGTCTTAAAATCTTCATTGGATGGGATCTTTGCTCTTTACAATTTCATCATATTGGTGAAATTGTTTCATATCAAGATGATGGAATGTGTTGTTATGAGTCTCAGTTATGCTAATTTGATATTATTAAACGGGTTTTTGTGTTGGATGAAATGTCATTGCTGCCAAATGGATTTATCTATAATTATAGAGAAGATTAGAGAAGATTAACCTATGAACAGGGTATTTGAAATTGTAGCAGAGCGTTCGGACTATCTTGTGTGCACCTCGATCAATCTTATCAGACAATCGTCTGATCCTACTACATTTAGTTGGAATAGAACCACGTCAGATATTAAATCTTATAAAGGTAAAGGTAGCCACCATAGATTCTATACCGACACTAAAACTTTCTATGCTTTTAAAAATACGATTGTTTTTATCGACCTATGAACAAAAATGGCGTAACATAGAACATAAAAGAAAGAATTCCCTGAAAATTATGGCCAAAAAGTTCTATTATAATCAAAAGGGTCGAAATACAAGAGATGAGTGCAAGTGCACCAATATTCATTCTTACCATTGCATTTCAGAAACTCACATCAAAAGGCTTCACATTTATATGTCTACAGGCAAAAACATCCTTGTTCTTTTACTTCATCTCCTTCCTCTAACCTGCTAACCTACTACCTACGATCGTGAAGAAGGATGGGAAGCAATACCACACCGGTTGGTAATGGTAGATGAGTCGTCTCTATGTCGTATCTTAATACACGTCAAAGTAAGCTTGGCACAGTGGTAGTAGTCATGTACCATCGACGAATATTGTTGAAACTAATGGTGTGTTCATAAAACTAAAAAGATTATAAAAAAATCTCACTAGTAAAACATAAATTTAACCTCAACATAACTCAACTGATTAAATCATATAATCGGCCAAAATGTCAAATGCACTACTACCGGGGGGAATAGAGATGAACACCGACACTACTTTGCTTTTCAATTGATATTGTTGGTGTTGTATTCTCACAAGGTAAATATCCTTGAAGCTTCCTCTTCCTGAAAATTTCTTGCCATTGCAAGAATACAAATTCTTCCTTAGAAGAAGGCATGTAGATGCAATCAAATGTTCTTGAACTGTTTGATTATCTCATCATTTTAGCTAGCTTCCGGAACCAGTATGGTATCAAAGATAAATTCAACTACAACAAAAGAGGATCAAGAATCAAGCCATTTTGCATATGTCAAAATGCAGCATATCAATACAGTTAATCCAAGCACCAAATGGATGCAAAAGCAACACAATTTTAGCTCTACCCCACTGACAACAGATAGACCACTTGATGGCCAAACTAAGCAATTTTTTTTAGACAATAGGTTTAATATACTGTTTTTTTTTTATATTTGTGATCGTTTGGTCAGTTTCTATGCACCTCGACTCGATTCTTTTCATGGGACAACTATATGACCCTAAACATGATATTTAATATACTTGTCAGGGAAGAAGAGATTTTAGATCAAACAAAAGCCATTAAAGTAAACAGCAAGGCAGGATTTGCCTCTGTAATGGTAAGTGAAGATCCTAGCAATTCAAGTTCAAGATCGTGCTTCTTTGTGGCAGACTTGTTCCTTTGACTTATTGTGAGAACTTGGCTTGAGAGGAACATCGGAATTTTTAGGGAGGTCGATGGATTGTGGGAGGAAGATTGGGGCGTAGCTAGGTTTAGTTCATCCTTATTGGTGTCTATTACCGGCCTTAATTAGGTGTGCTAACGAGGACGCTGGACCACTAAGGGAGGTGGATTGAACATTCCTTAAAAGGATGTGGAAACCTATCCCTAGTAGACGCGTTTTAAAAACCTTGAGGGGAAGCCTGAGAGGGAAAGCCCAAAGAGGACAATATTTGCTAGCGGTGGACTTGGGCTGTTACAGCTTAATTTGGTCCTCTCGGATTGAAGTCCTTTAGTGGGTTCTTTTTGTATGCACCCATACATTCTTCCATTTTTTTTTCCATAAAAACTAAATTTCTTACCAACAAATGTATACACTAAATGGCCTCTTTCATTCACAGATTTGATACTTCTAAACTTATAGATTACACATTCATCACTAAAGTTCATAATACGAAGTGCCGAACGAAAGTAGTCATCTACTAACCTTCCTCTTTCCGAATGTTAGGCTGATCAACCAAAAGTTGCTGTAAGGAACTGAGATCTTGGGCACTATGATTCCTAGCAATTCAAGATGCACATTTTTTCAGAGGGAAACAAATGGACCATAAATAATAACATAATTTGGAAGCAGAAAACAAAAATAAGATGATAAAAGGAATGAATCTAATAATGTATAAATTCATATGAAACATTACAAGAAAAGGATGTTTCATATGCAACTATCAAAAGCAATGGGATAAAGTTACCTGGGTTTCCAGAAAAGTTCTGGAAGTGCTGAGACCATAGATTCTTTAAGATGGTACCTAAAGAGATCGAAACAAGTTCATTACGAAGCCAAATACACATCCAGTAAAAAACTCACTTTCATGATCAGAAAAATTCTTACTCAGAGCGGTGCATGTCACATAGAAGCCTTAACCCGTTCAAGCAATCGTCAAGACTCGGTTTTAATCCAACTCTTTGTTGCAGTTGTTTCGTTGATGGCTGATTCGAACCACCTTTGA

mRNA sequence

ATGATCCCACTGAGCCTTGAGGCTGCTGGACTTGCTTCTCTAGCTTCCGGAACCAGTATGGTATCAAAGATAAATTCAACTACAACAAAAGAGGATCAAGAATCAAGCCATTTTGCATATGTCAAAATGCAGCATATCAATACAGTTAATCCAAGCACCAAATGGATGCAAAAGCAACACAATTTTAGCTCTACCCCACTGACAACAGATAGACCACTTGATGGCCAAACTAAGCAATTTTTTTTAGACAATAGGGAAGAAGAGATTTTAGATCAAACAAAAGCCATTAAAGTAAACAGCAAGGCAGGATTTGCCTCTGTAATGAAAAGTTCTGGAAGTGCTGAGACCATAGATTCTTTAAGATGGTACCTAAAGAGATCGAAACAAGTTCATTACGAAGCCAAATACACATCCAGTAAAAAACTCACTTTCATGATCAGAAAAATTCTTACTCAGAGCGGTGCATGTCACATAGAAGCCTTAACCCGTTCAAGCAATCGTCAAGACTCGGTTTTAATCCAACTCTTTGTTGCAGTTGTTTCGTTGATGGCTGATTCGAACCACCTTTGA

Coding sequence (CDS)

ATGATCCCACTGAGCCTTGAGGCTGCTGGACTTGCTTCTCTAGCTTCCGGAACCAGTATGGTATCAAAGATAAATTCAACTACAACAAAAGAGGATCAAGAATCAAGCCATTTTGCATATGTCAAAATGCAGCATATCAATACAGTTAATCCAAGCACCAAATGGATGCAAAAGCAACACAATTTTAGCTCTACCCCACTGACAACAGATAGACCACTTGATGGCCAAACTAAGCAATTTTTTTTAGACAATAGGGAAGAAGAGATTTTAGATCAAACAAAAGCCATTAAAGTAAACAGCAAGGCAGGATTTGCCTCTGTAATGAAAAGTTCTGGAAGTGCTGAGACCATAGATTCTTTAAGATGGTACCTAAAGAGATCGAAACAAGTTCATTACGAAGCCAAATACACATCCAGTAAAAAACTCACTTTCATGATCAGAAAAATTCTTACTCAGAGCGGTGCATGTCACATAGAAGCCTTAACCCGTTCAAGCAATCGTCAAGACTCGGTTTTAATCCAACTCTTTGTTGCAGTTGTTTCGTTGATGGCTGATTCGAACCACCTTTGA

Protein sequence

MIPLSLEAAGLASLASGTSMVSKINSTTTKEDQESSHFAYVKMQHINTVNPSTKWMQKQHNFSSTPLTTDRPLDGQTKQFFLDNREEEILDQTKAIKVNSKAGFASVMKSSGSAETIDSLRWYLKRSKQVHYEAKYTSSKKLTFMIRKILTQSGACHIEALTRSSNRQDSVLIQLFVAVVSLMADSNHL
Homology
[Close]
BLAST of Carg18115-RA vs. NCBI nr
Match: KAG7022769.1 (hypothetical protein SDJN02_16505, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 359.8 bits (922), Expect = 1.5e-95
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0 

Query: 1   MIPLSLEAAGLASLASGTSMVSKINSTTTKEDQESSHFAYVKMQHINTVNPSTKWMQKQH 60
           MIPLSLEAAGLASLASGTSMVSKINSTTTKEDQESSHFAYVKMQHINTVNPSTKWMQKQH
Sbjct: 1   MIPLSLEAAGLASLASGTSMVSKINSTTTKEDQESSHFAYVKMQHINTVNPSTKWMQKQH 60

Query: 61  NFSSTPLTTDRPLDGQTKQFFLDNREEEILDQTKAIKVNSKAGFASVMKSSGSAETIDSL 120
           NFSSTPLTTDRPLDGQTKQFFLDNREEEILDQTKAIKVNSKAGFASVMKSSGSAETIDSL
Sbjct: 61  NFSSTPLTTDRPLDGQTKQFFLDNREEEILDQTKAIKVNSKAGFASVMKSSGSAETIDSL 120

Query: 121 RWYLKRSKQVHYEAKYTSSKKLTFMIRKILTQSGACHIEALTRSSNRQDSVLIQLFVAVV 180
           RWYLKRSKQVHYEAKYTSSKKLTFMIRKILTQSGACHIEALTRSSNRQDSVLIQLFVAVV
Sbjct: 121 RWYLKRSKQVHYEAKYTSSKKLTFMIRKILTQSGACHIEALTRSSNRQDSVLIQLFVAVV 180

Query: 181 SLMADSNHL 190
           SLMADSNHL
Sbjct: 181 SLMADSNHL 189

The following BLAST results are available for this feature:
BLAST of Carg18115-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022769.11.5e-95100.00hypothetical protein SDJN02_16505, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg18115-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18115-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18115-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg18115Carg18115gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg18115-RA:4Carg18115-RA:4exon
Carg18115-RA:3Carg18115-RA:3exon
Carg18115-RA:2Carg18115-RA:2exon
Carg18115-RA:1Carg18115-RA:1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg18115-RA:cdsCarg18115-RA:cdsCDS
Carg18115-RA:cdsCarg18115-RA:cds_2CDS
Carg18115-RA:cdsCarg18115-RA:cds_3CDS
Carg18115-RA:cdsCarg18115-RA:cds_4CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg18115-RACarg18115-RA-proteinpolypeptide