Carg17749-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17749-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	WW domain-containing adapter protein with coiled-coil
Location	Carg_Chr04: 17418927 .. 17421768 (+)
Sequence length	924
RNA-Seq Expression	Carg17749-RA
Synteny	Carg17749-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCGAAAGAAGGCAAGAGAGGAACAAAAATGTCATTGGTAGACTACGCTTCGTCGGACGACGACGAGACGGCGGCGGAGGAGGAGGAGGAGGAGCAAAATCGGAAGAAACCGGAAGACCGCACCACTGAGGAGCCTCAATTCCCCAACCGAGAGCCGAGGTCTCAATCTCACCCCGTCAACCAGTAAGTTTTCTTCCATTTCTTCAGATTTTTTCTAGTTCCCAAGCGGGAGGGCTCCAATTTCAATTTCTTTTTTGCTTTTTCTCTATTCCAATCGAAGTTCAATCATTTTCCTGACCTTTTTTTTCACAAAGCGTATAGGTTTTGTCTTCGAAGTGAATGATGTGTTGGTTGTATACCAGTTCTTATTTTTTGTGTTCCATCTTTTAGGGTTATTGTTGTTGTTAGATTAACTGGGAGTAATGGAGTTTGTTGTGCTTCCAGATGTTCTTGACTGGCTTTTTAAAGATCGTTATTGTGGTCATACTGTTTATTTTTTTTGGTTTACTATGGAATTTTGCGAGTTCGAAATGGCTGCTACGTAGGTTTAGGGAATTCTTTAGCTGTTGATTTCATTACCTTGGAACTAAAGATTTGGTTTATTTTGGTTGGTATTCTGGTGTGTGTGATTTATTTCCTTGTGATTTGCACTGTAGGCCCATTCTTAAGCCAAAACAGCCATCTGAAACTAACGAGGATTCTTCTGTGCCTTCGGTTGAGCTTCCTGATGCTTCTCTGCTATTGAATTCTCCTACTTCTTCCAGTCTTCTTAGTGGTAGCGATCACTCTTCTCGAGTGGCAGCAGCCATGGCTGCCAATGCATCACGTAAGAGAGAAACAAATGTTTTGGGATCTTCTCTTCCCCGGAGTAAAGTTCCACGATCGAATTTGCCTCACTCAAAGAATGTTCCAGAGACTGTAGGGCGTTTGTTGGTTCCACCTCAGCTTACTGGAAGGTTCGTTCTATTATATTCTCTCCTTCTTTTCCACTTGTTTATGCTAATATTTGGATTCACTTAAGGTCAATGACATTATTCCCTGAATAAGTGATACTGCAAGACATTGATAATTGGATTTGATGCATTTATATATAGTTTATGAAGTCTGCACTAGGCGATGAGAATCGAATCATTTCGAAATCATGTACATACAGATGATTGCATTGGCATAGATATGATTCTAAGTTTATTTCTTTCCCGTGAAAGAGCTCTCTCAGTCTACCAATTAAAACCTATGATTCTAAGTTTAGCACCCACGACATAATGGTAATGTAGTAAGAAGTTAGGTATAAGATAAACATGGCTTTTTGTTTTTGGCCATGAATTGTTTTGTTAATACACTCGGTTCTATGAAAGTAAATGCATCGATCGGTGTTTGTCATCATCATTTCCTGCCTTGCAAGAACTTTAAAGTCAAATGTGACTCAGATTCCGTCCGATGTTATTGAGCCTGATATCAAGCTGCAGTTTCTTCTATTACAAATGTAGTTAACAGTAGAGTTGAGTTTCATATTAGTTAGTCAGTGGTTTGCTTGGATTAGGATTCGGTTTTCCATTTGGCAGTGAAACTAGTGGGTTTCATATATATTTCATTCCTTCTTTTGCTTATTAGAACAAGATATACAATCTTCTATATGTGGGGTATAATTGATTTGGGGTTTCTAGTTCAGAGGATGGAGCAGTTCCTTGCCAATGCCTTGCTATTGCTCCAAGTAACCGTAACTTCTTTAAGATATTACAATTTCACTGATTTTAATAGGAAAAAAATTTGACAGAAGAATCTTTCAACTGGTACGATGCTCTTTTCTTTGTTGTTCTTATTGCTAGTTTTTGTGTCACTGTTCTTCAATATGCTGGATGTGCTGAAGGCCTCCAGCAAGTGTGATTCTATCGCCTCAAGAACTTAGCATAGAGTTAGTGCATGTCATTACTCTTGCAAATATAACCAGCATGTGAGATCCCACATCAGTTGGAGGGGAACGACACCAAGGGTGTCGAAGCCTCTCCCTAGTAGACACATTTTAAAACTTTGAGGTTGACAGCGATACGTAACGGGCCAAATCGGACAATATCTGCTAGCAGTAGACTTGAACTTTTACAAATGGTATTAGAGCCAGACACCGGGCAGTGTGCCAGCGAGGACGCTGGCCCCCAAGAGGAGTGGACTGTGAAATCCCACATTGGTTGGAGAGGGGAACAATACCAAGGGTGTGGAAACCTCTCCCTAATAGACGTATTTTAAAACCGTGAGGCCGACGGCAATACGTAATGTGCCAAAGTTGACAATATCTACTAGCGGTGGGCTTAGGCTTAGGCTTAGGCTGTTACAATGTATTTTCTATTTTGTTTAGAATTTGTGATGAATTGTGATTGGAATCCTGAACTTGTTTTGCGTTTGGCAGGAGTAACATTGTCACTGAAGATATAAGCAAGTTGTTTGTGAAAAAGTCGGCCAAGCCCTCATAGAGGATTTCTTTCTAGAGTTGTGTTGGTTGTTGCAGCTTTCATTAATTAATAGTTTGTAGAAGTTTGAGGTTTGGTCTAATGCACTTTGTAGAATGTGAAGAATAGTGCACTCATATTTACTACCCAAAACGAAGGGGGTGGGGGGAAATGACCCAAGTTCAGATGCTTCTCTTCTATCTATCGTTTCTCAGGAATTGCAATGGTTTGTGGGTTATCTGTGGTACGTGAATTTTCCCCCCTCGAAAAACTAATGGGGCATAGTTTTGTTCTGAATCTTTTTCCCTTGTTCTTGTTTAATTTAGGTTAAGATATCATTTTTGTCTCGTCTTCGTTCCCTTGTTTGTTCTTGTAATGTTAGTTTAAATCTAATTTTGTTG

mRNA sequence

GTCGAAAGAAGGCAAGAGAGGAACAAAAATGTCATTGGTAGACTACGCTTCGTCGGACGACGACGAGACGGCGGCGGAGGAGGAGGAGGAGGAGCAAAATCGGAAGAAACCGGAAGACCGCACCACTGAGGAGCCTCAATTCCCCAACCGAGAGCCGAGGTCTCAATCTCACCCCGTCAACCAGCCCATTCTTAAGCCAAAACAGCCATCTGAAACTAACGAGGATTCTTCTGTGCCTTCGGTTGAGCTTCCTGATGCTTCTCTGCTATTGAATTCTCCTACTTCTTCCAGTCTTCTTAGTGGTAGCGATCACTCTTCTCGAGTGGCAGCAGCCATGGCTGCCAATGCATCACGTAAGAGAGAAACAAATGTTTTGGGATCTTCTCTTCCCCGGAGTAAAGTTCCACGATCGAATTTGCCTCACTCAAAGAATGTTCCAGAGACTGTAGGGCGTTTGTTGGTTCCACCTCAGCTTACTGGAAGGAGTAACATTGTCACTGAAGATATAAGCAAGTTGTTTGTGAAAAAGTCGGCCAAGCCCTCATAGAGGATTTCTTTCTAGAGTTGTGTTGGTTGTTGCAGCTTTCATTAATTAATAGTTTGTAGAAGTTTGAGGTTTGGTCTAATGCACTTTGTAGAATGTGAAGAATAGTGCACTCATATTTACTACCCAAAACGAAGGGGGTGGGGGGAAATGACCCAAGTTCAGATGCTTCTCTTCTATCTATCGTTTCTCAGGAATTGCAATGGTTTGTGGGTTATCTGTGGTACGTGAATTTTCCCCCCTCGAAAAACTAATGGGGCATAGTTTTGTTCTGAATCTTTTTCCCTTGTTCTTGTTTAATTTAGGTTAAGATATCATTTTTGTCTCGTCTTCGTTCCCTTGTTTGTTCTTGTAATGTTAGTTTAAATCTAATTTTGTTG

Coding sequence (CDS)

ATGTCATTGGTAGACTACGCTTCGTCGGACGACGACGAGACGGCGGCGGAGGAGGAGGAGGAGGAGCAAAATCGGAAGAAACCGGAAGACCGCACCACTGAGGAGCCTCAATTCCCCAACCGAGAGCCGAGGTCTCAATCTCACCCCGTCAACCAGCCCATTCTTAAGCCAAAACAGCCATCTGAAACTAACGAGGATTCTTCTGTGCCTTCGGTTGAGCTTCCTGATGCTTCTCTGCTATTGAATTCTCCTACTTCTTCCAGTCTTCTTAGTGGTAGCGATCACTCTTCTCGAGTGGCAGCAGCCATGGCTGCCAATGCATCACGTAAGAGAGAAACAAATGTTTTGGGATCTTCTCTTCCCCGGAGTAAAGTTCCACGATCGAATTTGCCTCACTCAAAGAATGTTCCAGAGACTGTAGGGCGTTTGTTGGTTCCACCTCAGCTTACTGGAAGGAGTAACATTGTCACTGAAGATATAAGCAAGTTGTTTGTGAAAAAGTCGGCCAAGCCCTCATAG

Protein sequence

MSLVDYASSDDDETAAEEEEEEQNRKKPEDRTTEEPQFPNREPRSQSHPVNQPILKPKQPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGSSLPRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS

Homology

[Close]

BLAST of Carg17749-RA vs. NCBI nr
Match: KAG6601958.1 (hypothetical protein SDJN03_07191, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032653.1 hypothetical protein SDJN02_06703 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 310.8 bits (795), Expect = 7.2e-81
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MSLVDYASSDDDETAAEEEEEEQNRKKPEDRTTEEPQFPNREPRSQSHPVNQPILKPKQP 60
           MSLVDYASSDDDETAAEEEEEEQNRKKPEDRTTEEPQFPNREPRSQSHPVNQPILKPKQP
Sbjct: 1   MSLVDYASSDDDETAAEEEEEEQNRKKPEDRTTEEPQFPNREPRSQSHPVNQPILKPKQP 60

Query: 61  SETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGSSL 120
           SETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGSSL
Sbjct: 61  SETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGSSL 120

Query: 121 PRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 173
           PRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS
Sbjct: 121 PRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 172

[Close]

BLAST of Carg17749-RA vs. NCBI nr
Match: XP_023517928.1 (uncharacterized protein LOC111781514 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 307.0 bits (785), Expect = 1.0e-79
Identity = 170/172 (98.84%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MSLVDYASSDDDETAAEEEEEEQNRKKPEDRTTEEPQFPNREPRSQSHPVNQPILKPKQP 60
           MSLVDYASSDDDETAA EEEEEQNRKKPEDRTTEEPQFPN+EPRSQSHPVNQPILKPKQP
Sbjct: 1   MSLVDYASSDDDETAAAEEEEEQNRKKPEDRTTEEPQFPNQEPRSQSHPVNQPILKPKQP 60

Query: 61  SETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGSSL 120
           SETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGSSL
Sbjct: 61  SETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGSSL 120

Query: 121 PRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 173
           PRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS
Sbjct: 121 PRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 172

[Close]

BLAST of Carg17749-RA vs. NCBI nr
Match: XP_022990875.1 (uncharacterized protein LOC111487632 isoform X1 [Cucurbita maxima])

HSP 1 Score: 298.1 bits (762), Expect = 4.8e-77
Identity = 167/175 (95.43%), Postives = 171/175 (97.71%), Query Frame = 0


Query: 1   MSLVDYASSDDDETAA---EEEEEEQNRKKPEDRTTEEPQFPNREPRSQSHPVNQPILKP 60
           MSLVDYASSDDDETAA   EEEE++QNRKKPED TT+EPQFPN+EPRSQSHPVNQPILKP
Sbjct: 1   MSLVDYASSDDDETAAAAEEEEEQQQNRKKPEDHTTKEPQFPNQEPRSQSHPVNQPILKP 60

Query: 61  KQPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLG 120
           KQPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLG
Sbjct: 61  KQPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLG 120

Query: 121 SSLPRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 173
           SSLPRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS
Sbjct: 121 SSLPRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 175

[Close]

BLAST of Carg17749-RA vs. NCBI nr
Match: XP_022964179.1 (uncharacterized protein LOC111464275 isoform X1 [Cucurbita moschata])

HSP 1 Score: 297.7 bits (761), Expect = 6.3e-77
Identity = 168/174 (96.55%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 1   MSLVDYASSDDDETAA--EEEEEEQNRKKPEDRTTEEPQFPNREPRSQSHPVNQPILKPK 60
           MSLVDYASSDDDETAA  EEEEEEQNRKKPED TT+EPQFPN+EPRSQSHPVNQ ILKPK
Sbjct: 1   MSLVDYASSDDDETAAAEEEEEEEQNRKKPEDHTTKEPQFPNQEPRSQSHPVNQSILKPK 60

Query: 61  QPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGS 120
           QPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGS
Sbjct: 61  QPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGS 120

Query: 121 SLPRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 173
           SLPRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS
Sbjct: 121 SLPRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 174

[Close]

BLAST of Carg17749-RA vs. NCBI nr
Match: XP_023517937.1 (uncharacterized protein LOC111781514 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 284.3 bits (726), Expect = 7.2e-73
Identity = 162/172 (94.19%), Postives = 163/172 (94.77%), Query Frame = 0


Query: 1   MSLVDYASSDDDETAAEEEEEEQNRKKPEDRTTEEPQFPNREPRSQSHPVNQPILKPKQP 60
           MSLVDYASSDDDETAA EEEEEQNRKKPEDRTTEEPQFPN+EPR        PILKPKQP
Sbjct: 1   MSLVDYASSDDDETAAAEEEEEQNRKKPEDRTTEEPQFPNQEPR--------PILKPKQP 60

Query: 61  SETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGSSL 120
           SETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGSSL
Sbjct: 61  SETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGSSL 120

Query: 121 PRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 173
           PRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS
Sbjct: 121 PRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 164

[Close]

BLAST of Carg17749-RA vs. ExPASy TrEMBL
Match: A0A6J1JRA7 (uncharacterized protein LOC111487632 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487632 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.3e-77
Identity = 167/175 (95.43%), Postives = 171/175 (97.71%), Query Frame = 0


Query: 1   MSLVDYASSDDDETAA---EEEEEEQNRKKPEDRTTEEPQFPNREPRSQSHPVNQPILKP 60
           MSLVDYASSDDDETAA   EEEE++QNRKKPED TT+EPQFPN+EPRSQSHPVNQPILKP
Sbjct: 1   MSLVDYASSDDDETAAAAEEEEEQQQNRKKPEDHTTKEPQFPNQEPRSQSHPVNQPILKP 60

Query: 61  KQPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLG 120
           KQPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLG
Sbjct: 61  KQPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLG 120

Query: 121 SSLPRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 173
           SSLPRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS
Sbjct: 121 SSLPRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 175

[Close]

BLAST of Carg17749-RA vs. ExPASy TrEMBL
Match: A0A6J1HMD3 (uncharacterized protein LOC111464275 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464275 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.0e-77
Identity = 168/174 (96.55%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 1   MSLVDYASSDDDETAA--EEEEEEQNRKKPEDRTTEEPQFPNREPRSQSHPVNQPILKPK 60
           MSLVDYASSDDDETAA  EEEEEEQNRKKPED TT+EPQFPN+EPRSQSHPVNQ ILKPK
Sbjct: 1   MSLVDYASSDDDETAAAEEEEEEEQNRKKPEDHTTKEPQFPNQEPRSQSHPVNQSILKPK 60

Query: 61  QPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGS 120
           QPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGS
Sbjct: 61  QPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGS 120

Query: 121 SLPRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 173
           SLPRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS
Sbjct: 121 SLPRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 174

[Close]

BLAST of Carg17749-RA vs. ExPASy TrEMBL
Match: A0A6J1HH61 (uncharacterized protein LOC111464275 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464275 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 3.2e-71
Identity = 161/174 (92.53%), Postives = 163/174 (93.68%), Query Frame = 0


Query: 1   MSLVDYASSDDDETAA--EEEEEEQNRKKPEDRTTEEPQFPNREPRSQSHPVNQPILKPK 60
           MSLVDYASSDDDETAA  EEEEEEQNRKKPED TT+EPQFPN+EPRS        ILKPK
Sbjct: 1   MSLVDYASSDDDETAAAEEEEEEEQNRKKPEDHTTKEPQFPNQEPRS--------ILKPK 60

Query: 61  QPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGS 120
           QPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGS
Sbjct: 61  QPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGS 120

Query: 121 SLPRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 173
           SLPRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS
Sbjct: 121 SLPRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 166

[Close]

BLAST of Carg17749-RA vs. ExPASy TrEMBL
Match: A0A6J1JP61 (uncharacterized protein LOC111487632 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487632 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.6e-70
Identity = 159/175 (90.86%), Postives = 163/175 (93.14%), Query Frame = 0


Query: 1   MSLVDYASSDDDETAA---EEEEEEQNRKKPEDRTTEEPQFPNREPRSQSHPVNQPILKP 60
           MSLVDYASSDDDETAA   EEEE++QNRKKPED TT+EPQFPN+EPR        PILKP
Sbjct: 1   MSLVDYASSDDDETAAAAEEEEEQQQNRKKPEDHTTKEPQFPNQEPR--------PILKP 60

Query: 61  KQPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLG 120
           KQPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLG
Sbjct: 61  KQPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLG 120

Query: 121 SSLPRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 173
           SSLPRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS
Sbjct: 121 SSLPRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 167

[Close]

BLAST of Carg17749-RA vs. ExPASy TrEMBL
Match: A0A6J1CIF3 (WW domain-containing adapter protein with coiled-coil OS=Momordica charantia OX=3673 GN=LOC111011781 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.4e-60
Identity = 140/172 (81.40%), Postives = 148/172 (86.05%), Query Frame = 0


Query: 1   MSLVDYASSDDDETAAEEEEEEQNRKKPEDRTTEEPQFPNREPRSQSHPVNQPILKPKQP 60
           MSLVDYASSDDD  AA   EEEQN ++PE+   EEPQFP  EP+ Q  P+NQPILKP QP
Sbjct: 1   MSLVDYASSDDDVPAA--AEEEQNPEQPENHRVEEPQFPKHEPQPQPPPLNQPILKPNQP 60

Query: 61  SETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGSSL 120
            ETN DSSV SVELPDASLLLNSPTSSSL  GSDHSSRVAAAMAANASRKRETNV  S+L
Sbjct: 61  LETNGDSSVFSVELPDASLLLNSPTSSSLFGGSDHSSRVAAAMAANASRKRETNVSASAL 120

Query: 121 PRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 173
           PRSKVPRS LPHSKNVP+T+GR LVPPQLTGRSNIVTEDISKLFVKKSAKPS
Sbjct: 121 PRSKVPRSTLPHSKNVPDTLGRSLVPPQLTGRSNIVTEDISKLFVKKSAKPS 170

[Close]

BLAST of Carg17749-RA vs. TAIR 10
Match: AT5G13470.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-24
Identity = 85/170 (50.00%), Postives = 107/170 (62.94%), Query Frame = 0


Query: 1   MSLVDY--ASSDDDETAAEEEEEEQNRKKPEDRTTEEPQFPNREPRSQSHPVNQPILKPK 60
           MSLVDY  +SSDDD  AAEE+   Q +K+     +    FP +  R +            
Sbjct: 1   MSLVDYDDSSSDDDVLAAEEKPLPQTQKR---LVSPAQSFPPKRQRFE------------ 60

Query: 61  QPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGS 120
                 +D SV   +LPDA LLL SPT +  ++G DH+S VAAAMA +A RKR+ +   S
Sbjct: 61  ------QDESVE--KLPDALLLLESPTLAQ-VTGGDHASVVAAAMAESALRKRDLSGNAS 120

Query: 121 SLP-RSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKK 168
           SLP R K+PR NLPHSKN PET+G +LVPPQL GRSN+ TED+S+LFVKK
Sbjct: 121 SLPRRPKLPRGNLPHSKNYPETLGNVLVPPQLKGRSNVATEDMSRLFVKK 146

The following BLAST results are available for this feature:

BLAST of Carg17749-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601958.1	7.2e-81	100.00	hypothetical protein SDJN03_07191, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023517928.1	1.0e-79	98.84	uncharacterized protein LOC111781514 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022990875.1	4.8e-77	95.43	uncharacterized protein LOC111487632 isoform X1 [Cucurbita maxima]	[more]
XP_022964179.1	6.3e-77	96.55	uncharacterized protein LOC111464275 isoform X1 [Cucurbita moschata]	[more]
XP_023517937.1	7.2e-73	94.19	uncharacterized protein LOC111781514 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg17749-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg17749-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JRA7	2.3e-77	95.43	uncharacterized protein LOC111487632 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HMD3	3.0e-77	96.55	uncharacterized protein LOC111464275 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HH61	3.2e-71	92.53	uncharacterized protein LOC111464275 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JP61	1.6e-70	90.86	uncharacterized protein LOC111487632 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1CIF3	4.4e-60	81.40	WW domain-containing adapter protein with coiled-coil OS=Momordica charantia OX=...	[more]

BLAST of Carg17749-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13470.1	1.3e-24	50.00	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..135
None	No IPR available	PANTHER	PTHR33912:SF3	OS01G0939400 PROTEIN	coord: 1..171
IPR040381	Uncharacterized protein At4g14450-like	PANTHER	PTHR33912	OS01G0939400 PROTEIN	coord: 1..171

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg17749	Carg17749	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17749-RA:1	Carg17749-RA:1	exon
Carg17749-RA:2	Carg17749-RA:2	exon
Carg17749-RA:3	Carg17749-RA:3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17749-RA:five_prime_utr	Carg17749-RA:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17749-RA:cds	Carg17749-RA:cds	CDS
Carg17749-RA:cds	Carg17749-RA:cds_2	CDS
Carg17749-RA:cds	Carg17749-RA:cds_3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17749-RA:three_prime_utr	Carg17749-RA:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg17749-RA	Carg17749-RA-protein	polypeptide