Carg17073-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17073-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Exonuclease domain-containing protein
Location	Carg_Chr09: 4458097 .. 4461382 (-)
Sequence length	837
RNA-Seq Expression	Carg17073-RA
Synteny	Carg17073-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGTGAGAGCGCCGCTGCTTAAGGTTTCGTCATTCTACTCAGTCCCATGTCATTCTCTGGTTCCGTTGTCTCTCTCTGCCGCAATTTGTTCTTCTCCACGGACACCTTTAGCTATCCGATGTCATTCATCTCTCCCCACAGCCCACGATCCATCTTCTTCGGCTCCCTCTGAATCCCTCGATGTGGTGCATAATCGTTGGAGGCCCATGTGTTTGTATTACACACAGAGCAAGTGTACAATGGTATTCTTTTTAAATTCTGGATTTGAGCTGTTGCACTCGCGTTTTTCGAATGCCTCTTTGTTTTCTTTGCTTACAGTTTCTGAAGTGACTGAAGATTCTACTTGATTGTGTGTGCCATGTGGTTAGTTTGGTGTTGTACACCACATGTTCGACGATATTCCTCAGAGAACTTTTGCTCGTTTTTCTTGCGTGTTAAGCTGCCTGCTAGTTGAATTTGGTAACCCACCAGAACAAAATTGGAAATGATACGAATTTACGACCATTTTCCACTATTGATCAGACTATGATCTTATGTTGTGTGTTCTAGTGGTTCTGACTGAAGTTCCCTAGCTGAAATTTCGCAGCCAAATTTAGATATTCATGTGACCCTGTTTTGTAGATGGATGATCCACTCCACATAAAGAAGTTCAATCATGATATCTCCAGGGAGCTTCAGGTAGATGTTGCTAGCTCAAAACATATGCGAACTCAGGATATTGAGTTTTTTCTGGTGCTTGATTTGGAGGGAAAAGTTGAAATAATTGAGTTTCCAGTCATATTAGTCAATGCCAAGACACTGGATGTGACGGGTTTTTTCCACAGGTTCTACCTGCTTCTTTGTGACCTGCTCACTCTTGCTCTTTGTTATGCATTTATTTATCTTTCCGCTCGGCAGATTTTATATTTTATGCATCTCTATATTTCCCTGTTACCTGCTTTTTCTTCTTAATAGATCTGTAAAGATTTTAATCTCAAAGAGCATGTAGATGGAATCCCTTTAAGGCTTCTCCTCAAGGTTTTTAAAACGACCGTGAGGGGAAGCCCGAAAGGAAAAGCCCAATGAGGACAATATCTATTAGCGGTGGGCTTGAGATGTTATAGGATGACTTACTACCTCGATGGACATATTGATTGCATGTAATATAAGCATGGAGTAAAATGTTCGCTTAATTTGGAACCATTGTAGCATATGTAATGTGTAGTTAGGAAAATCGGCTTCTGTGCGGTTGAGAGATGACACTGACCGGTTTATTATGCTTGTAACCCCGTCATGTAAAATGGTTTAACTTCTAAGAATGTCAACAAATGTTCTTTGGATGATTAAGAACAAGAAATTTATGGTTTTTCTTTTTTGGTTCTACGTTCTTTGACGACTGCCTTAAATCCTTCCTCAGGTTTGTTAGGCCTTCAAGAATGAGTGAACGAAGGATAAATGAGTACATTGAAGGAAAATATGGCAAGTTTGGAGTTGACCGGTATGTCTAATCTATGTGTGGTGAAGGCTTGATAATGTTCGACATTATTGTGGATTCATTTAGTTCTTAGGCTTTAGTACAAATATATTTCAAAGCATGATTGTATGGCGTACATGTCCAATGCTAATCAGGTAGGACGTGAGATCCCACATCGATTGGAGAGGGGAACGAAGCATTCCTTATAAGGGTGTGGAAACCTCTCCCTAATAGACGCGTTTAAAAACCGTGAGGCTGACGGTGATATGTAATGGGCCAAAGTAGACAATATCTACTATCAGTGGGCTTGGGCTTGGGCGTTACAAATAGTATCAGAGCTAGACACCGAGCGGTATGCCATTGAGGACGCTAGGCCCCCAAGGGGTTGGATTATGAGATCCCACATCAGTTGGAGTGGAGAACAAAGCATTCCTTATAAGGGTGTGGAAACCTCTCCTAGTAGACGGGTTTTGGAACCATGAGGTTAACGGCGATATGTAACGGGCCAAAGCGGATAATATCTGCTAGCGGTGGGTTTGGGCTATTACATAGGACTACTTTTTCTTCCATATGTTTACAAGTGCCGTTAAGATTCTAATGGACTTCTTTTTACTAGCTGATAGTTCCATATTATATTTTCAGTGTCTGGCATGACACAGCCATACTGTACAAGGATGTTATACAGCAGTTCGAAGACTGGCTGGTTGAGCATCAGCTATGGAGGAAGGAACTGGGCGGTGTTCTTGATCGAGCAGCATTCGTGACATGGCAAGCCTCCTTTTCTCGATCTACTTTTAAGCTTTACAATTACTTGCTAAATTGTTCATTTATTCATATTGTGAATGTGGTATGTGTAACAGAAGTGTTAATGATTTATGCCATCTTTTACTTGTACCAGTGGAAACTGGGATATAAAAACTCAGGTCCCACATCAATGCAGCGTGTCAAACATGAAACTTCCTGACTATTTTATGGAGTGGATCAATATCAAAGATGTCTATCTCAACTTTTACCAAAAGAAGGTACGATGGTCTGTCGAAATAAGAGAGTTTGTAGCATCTTGAGTAGGGCGTAACATCGATTAATTAAGGGGTTGATCATAAGTTTATAGGTAAGGAATACATCTCCATTGGTATGAGACCTTTTAGGAACCAAAATCAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTCTGGAGCCCTCGAACAAAGTACACCATTTGTTCGATACTTGAGTCATTTTTTACTACACCTTTGAAGCTAGCAACTTCTTTGTTGGACACTTGAAGATTCTATTGACATGACTAAGTTAATGGCATGACTCTGATACCATATTAAGAATCACAACTCTCCACAATGGTATGATATTGTCCACCTCGAGTATAAGCTCTCATGGTCTTGCTTTGGGCTTCCCAAGAAGTCTCATACCAATGGAGATAGTACTCCTCACTTGTAAACTCATGATCTTCCACTAAATTAGCCAACGTGGGACTCTCTCCCAACAATTCTCAACACTATCTGTTTTTGGTCATGATTCAACGTTATGTTTAGTTTCTCTGAGAATGGAGCTTACATGACCAATTATCGATGAAGTTCTTTACTTTGGATGGTAATTGCTAGGCGACAGGAATGACGACGATGATGAGACAACTCGAAATACCCTTGGTGGGAAGCCATCATCTTGGTATAGATGACACAAAGAACATCGTGAGAGTGTTGCAGAGAATGGTCGCTGATGGTGCGCATTTGCAGATCACTGCTCGTAGGAATCCCAATTCTCCTCAACATGTTAAGTTTCGTTTTGAGAACCGTATTTAA

mRNA sequence

ATGTTTGTGAGAGCGCCGCTGCTTAAGGTTTCGTCATTCTACTCAGTCCCATGTCATTCTCTGGTTCCGTTGTCTCTCTCTGCCGCAATTTGTTCTTCTCCACGGACACCTTTAGCTATCCGATGTCATTCATCTCTCCCCACAGCCCACGATCCATCTTCTTCGGCTCCCTCTGAATCCCTCGATGTGGTGCATAATCGTTGGAGGCCCATGTGTTTGTATTACACACAGAGCAAGTGTACAATGATGGATGATCCACTCCACATAAAGAAGTTCAATCATGATATCTCCAGGGAGCTTCAGGTAGATGTTGCTAGCTCAAAACATATGCGAACTCAGGATATTGAGTTTTTTCTGGTGCTTGATTTGGAGGGAAAAGTTGAAATAATTGAGTTTCCAGTCATATTAGTCAATGCCAAGACACTGGATGTGACGGGTTTTTTCCACAGGCCTTCAAGAATGAGTGAACGAAGGATAAATGAGTACATTGAAGGAAAATATGGCAAGTTTGGAGTTGACCGTGTCTGGCATGACACAGCCATACTGTACAAGGATGTTATACAGCAGTTCGAAGACTGGCTGGTTGAGCATCAGCTATGGAGGAAGGAACTGGGCGGTGTTCTTGATCGAGCAGCATTCGCGACAGGAATGACGACGATGATGAGACAACTCGAAATACCCTTGGTGGGAAGCCATCATCTTGGTATAGATGACACAAAGAACATCGTGAGAGTGTTGCAGAGAATGGTCGCTGATGGTGCGCATTTGCAGATCACTGCTCGTAGGAATCCCAATTCTCCTCAACATGTTAAGTTTCGTTTTGAGAACCGTATTTAA

Coding sequence (CDS)

ATGTTTGTGAGAGCGCCGCTGCTTAAGGTTTCGTCATTCTACTCAGTCCCATGTCATTCTCTGGTTCCGTTGTCTCTCTCTGCCGCAATTTGTTCTTCTCCACGGACACCTTTAGCTATCCGATGTCATTCATCTCTCCCCACAGCCCACGATCCATCTTCTTCGGCTCCCTCTGAATCCCTCGATGTGGTGCATAATCGTTGGAGGCCCATGTGTTTGTATTACACACAGAGCAAGTGTACAATGATGGATGATCCACTCCACATAAAGAAGTTCAATCATGATATCTCCAGGGAGCTTCAGGTAGATGTTGCTAGCTCAAAACATATGCGAACTCAGGATATTGAGTTTTTTCTGGTGCTTGATTTGGAGGGAAAAGTTGAAATAATTGAGTTTCCAGTCATATTAGTCAATGCCAAGACACTGGATGTGACGGGTTTTTTCCACAGGCCTTCAAGAATGAGTGAACGAAGGATAAATGAGTACATTGAAGGAAAATATGGCAAGTTTGGAGTTGACCGTGTCTGGCATGACACAGCCATACTGTACAAGGATGTTATACAGCAGTTCGAAGACTGGCTGGTTGAGCATCAGCTATGGAGGAAGGAACTGGGCGGTGTTCTTGATCGAGCAGCATTCGCGACAGGAATGACGACGATGATGAGACAACTCGAAATACCCTTGGTGGGAAGCCATCATCTTGGTATAGATGACACAAAGAACATCGTGAGAGTGTTGCAGAGAATGGTCGCTGATGGTGCGCATTTGCAGATCACTGCTCGTAGGAATCCCAATTCTCCTCAACATGTTAAGTTTCGTTTTGAGAACCGTATTTAA

Protein sequence

MFVRAPLLKVSSFYSVPCHSLVPLSLSAAICSSPRTPLAIRCHSSLPTAHDPSSSAPSESLDVVHNRWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRTQDIEFFLVLDLEGKVEIIEFPVILVNAKTLDVTGFFHRPSRMSERRINEYIEGKYGKFGVDRVWHDTAILYKDVIQQFEDWLVEHQLWRKELGGVLDRAAFATGMTTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADGAHLQITARRNPNSPQHVKFRFENRI

Homology

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BLAST of Carg17073-RA vs. NCBI nr
Match: KAG7024805.1 (putative exonuclease domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 566.6 bits (1459), Expect = 1.2e-157
Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0


Query: 1   MFVRAPLLKVSSFYSVPCHSLVPLSLSAAICSSPRTPLAIRCHSSLPTAHDPSSSAPSES 60
           MFVRAPLLKVSSFYSVPCHSLVPLSLSAAICSSPRTPLAIRCHSSLPTAHDPSSSAPSES
Sbjct: 1   MFVRAPLLKVSSFYSVPCHSLVPLSLSAAICSSPRTPLAIRCHSSLPTAHDPSSSAPSES 60

Query: 61  LDVVHNRWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRTQDIEFFLV 120
           LDVVHNRWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRTQDIEFFLV
Sbjct: 61  LDVVHNRWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRTQDIEFFLV 120

Query: 121 LDLEGKVEIIEFPVILVNAKTLDVTGFFHRPSRMSERRINEYIEGKYGKFGVDRVWHDTA 180
           LDLEGKVEIIEFPVILVNAKTLDVTGFFHRPSRMSERRINEYIEGKYGKFGVDRVWHDTA
Sbjct: 121 LDLEGKVEIIEFPVILVNAKTLDVTGFFHRPSRMSERRINEYIEGKYGKFGVDRVWHDTA 180

Query: 181 ILYKDVIQQFEDWLVEHQLWRKELGGVLDRAAFATGMTTMMRQLEIPLVGSHHLGIDDTK 240
           ILYKDVIQQFEDWLVEHQLWRKELGGVLDRAAFATGMTTMMRQLEIPLVGSHHLGIDDTK
Sbjct: 181 ILYKDVIQQFEDWLVEHQLWRKELGGVLDRAAFATGMTTMMRQLEIPLVGSHHLGIDDTK 240

Query: 241 NIVRVLQRMVADGAHLQITARRNPNSPQHVKFRFENRI 279
           NIVRVLQRMVADGAHLQITARRNPNSPQHVKFRFENRI
Sbjct: 241 NIVRVLQRMVADGAHLQITARRNPNSPQHVKFRFENRI 278

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BLAST of Carg17073-RA vs. NCBI nr
Match: XP_022935722.1 (uncharacterized exonuclease domain-containing protein At3g15140 [Cucurbita moschata])

HSP 1 Score: 535.0 bits (1377), Expect = 3.8e-148
Identity = 274/325 (84.31%), Postives = 277/325 (85.23%), Query Frame = 0


Query: 1   MFVRAPLLKVSSFYSVPCHSLVPLSLSAAICSSPRTPLAIRCHSSLPTAHDPSSSAPSES 60
           MFVRAPLLKVSSFYS+PCHSLVPL LS+AICSSPRTPL+IRCHSSLPTAHDPSSSAPSES
Sbjct: 1   MFVRAPLLKVSSFYSIPCHSLVPLYLSSAICSSPRTPLSIRCHSSLPTAHDPSSSAPSES 60

Query: 61  LDVVHNRWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRTQDIEFFLV 120
           LDVVHNRWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRTQDIEFFLV
Sbjct: 61  LDVVHNRWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRTQDIEFFLV 120

Query: 121 LDLEGKVEIIEFPVILVNAKTLDVTGFFH---RPSRMSERRINEYIEGKYGKFGVDRVWH 180
           LDLEGKVEIIEFPVILVNAKTLDVTGFFH   RPSRMSERRINEYIEGKYGKFGVDRVWH
Sbjct: 121 LDLEGKVEIIEFPVILVNAKTLDVTGFFHRFVRPSRMSERRINEYIEGKYGKFGVDRVWH 180

Query: 181 DTAILYKDVIQQFEDWLVEHQLWRKELGGVLDRAAF------------------------ 240
           DTAILYKDVIQQFEDWLVEHQLWRKELGGVLDRAAF                        
Sbjct: 181 DTAILYKDVIQQFEDWLVEHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSNMKLP 240

Query: 241 --------------------ATGMTTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADG 279
                               ATGMTTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADG
Sbjct: 241 DYFMEWINIKDVYLNFYQKKATGMTTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADG 300

[Close]

BLAST of Carg17073-RA vs. NCBI nr
Match: XP_023535410.1 (uncharacterized exonuclease domain-containing protein At3g15140 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 533.1 bits (1372), Expect = 1.4e-147
Identity = 274/325 (84.31%), Postives = 276/325 (84.92%), Query Frame = 0


Query: 1   MFVRAPLLKVSSFYSVPCHSLVPLSLSAAICSSPRTPLAIRCHSSLPTAHDPSSSAPSES 60
           MFVRAPLLKVSSFYSVPCHSLVPLSLSAAICSSPRTPLAIRCHSSLPTAH+PSSSAPSES
Sbjct: 1   MFVRAPLLKVSSFYSVPCHSLVPLSLSAAICSSPRTPLAIRCHSSLPTAHEPSSSAPSES 60

Query: 61  LDVVHNRWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRTQDIEFFLV 120
           LDVVHNRWRPMCLYYTQSKCTMMDDPLH+KKFNHDISRELQVDVASSKHMRTQDIEFFLV
Sbjct: 61  LDVVHNRWRPMCLYYTQSKCTMMDDPLHVKKFNHDISRELQVDVASSKHMRTQDIEFFLV 120

Query: 121 LDLEGKVEIIEFPVILVNAKTLDVTGFFH---RPSRMSERRINEYIEGKYGKFGVDRVWH 180
           LDLEGKVEIIEFPVILVNAKTLDVTGFFH   RPSRMSERRINEYIEGKYGKFGVDRVWH
Sbjct: 121 LDLEGKVEIIEFPVILVNAKTLDVTGFFHRFVRPSRMSERRINEYIEGKYGKFGVDRVWH 180

Query: 181 DTAILYKDVIQQFEDWLVEHQLWRKELGGVLDRAAF------------------------ 240
           DTAILYKDVIQQFEDWLVEHQLWRKELGGVLDRAAF                        
Sbjct: 181 DTAILYKDVIQQFEDWLVEHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSNMKLP 240

Query: 241 --------------------ATGMTTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADG 279
                               ATGM TMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADG
Sbjct: 241 DYFMEWINIKDVYLNFYQKKATGMATMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADG 300

[Close]

BLAST of Carg17073-RA vs. NCBI nr
Match: XP_022976542.1 (uncharacterized exonuclease domain-containing protein At3g15140 [Cucurbita maxima])

HSP 1 Score: 528.9 bits (1361), Expect = 2.7e-146
Identity = 270/325 (83.08%), Postives = 275/325 (84.62%), Query Frame = 0


Query: 1   MFVRAPLLKVSSFYSVPCHSLVPLSLSAAICSSPRTPLAIRCHSSLPTAHDPSSSAPSES 60
           MFVRAPLLKVSSFYS+PCHSLVPLSLS+AICSSPRTPLAIRCHSSLPTAH+PSSSAPSES
Sbjct: 1   MFVRAPLLKVSSFYSIPCHSLVPLSLSSAICSSPRTPLAIRCHSSLPTAHEPSSSAPSES 60

Query: 61  LDVVHNRWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRTQDIEFFLV 120
           LDVVHNRWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRTQDIEFFLV
Sbjct: 61  LDVVHNRWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRTQDIEFFLV 120

Query: 121 LDLEGKVEIIEFPVILVNAKTLDVTGFFH---RPSRMSERRINEYIEGKYGKFGVDRVWH 180
           LDLEGKVEIIEFPVILVNAKTLDVTGFFH   RPSRMSERRINEYIEGKYGKFGVDRVWH
Sbjct: 121 LDLEGKVEIIEFPVILVNAKTLDVTGFFHRFVRPSRMSERRINEYIEGKYGKFGVDRVWH 180

Query: 181 DTAILYKDVIQQFEDWLVEHQLWRKELGGVLDRAAF------------------------ 240
           DTAILYKDVIQQFEDWLVEHQ+WRK+LGGVLDRAAF                        
Sbjct: 181 DTAILYKDVIQQFEDWLVEHQIWRKDLGGVLDRAAFVTCGNWDIKTQVPHQCSVSNMKLP 240

Query: 241 --------------------ATGMTTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADG 279
                               ATGM  MMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADG
Sbjct: 241 DYFMEWINIKDVYLNFYQKKATGMAMMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADG 300

[Close]

BLAST of Carg17073-RA vs. NCBI nr
Match: XP_004146041.1 (uncharacterized exonuclease domain-containing protein At3g15140 isoform X1 [Cucumis sativus] >KGN55096.1 hypothetical protein Csa_012433 [Cucumis sativus])

HSP 1 Score: 471.1 bits (1211), Expect = 6.7e-129
Identity = 237/325 (72.92%), Postives = 256/325 (78.77%), Query Frame = 0


Query: 1   MFVRAPLLKVSSFYSVPCHSLVPLSLSAAICSSPRTPLAIRCHSSLPTAHDPSSSAPSES 60
           MF+RA LLK SSFYS+PCH L+P+SLS++ICSSPRTP +IRCHS+ P +H+PSSSA SE 
Sbjct: 1   MFLRASLLKFSSFYSIPCHPLLPVSLSSSICSSPRTPFSIRCHSAFPLSHEPSSSASSEF 60

Query: 61  LDVVHNRWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRTQDIEFFLV 120
            DV  NRWRP CLY+T  +CTMMDDPLHIKKFNHDISRELQVDVA S HMRTQD ++FLV
Sbjct: 61  PDVADNRWRPTCLYFTHGRCTMMDDPLHIKKFNHDISRELQVDVARSNHMRTQDFDYFLV 120

Query: 121 LDLEGKVEIIEFPVILVNAKTLDVTGFFH---RPSRMSERRINEYIEGKYGKFGVDRVWH 180
           LDLEGKVEIIEFPVILVNAKT+ VTGFFH   RPSRMSE+RINEYIEGKYGKFGVDRVWH
Sbjct: 121 LDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWH 180

Query: 181 DTAILYKDVIQQFEDWLVEHQLWRKELGGVLDRAAF------------------------ 240
           DTAILYKDVIQQFEDWLV+HQLWRKELGGVLDRAAF                        
Sbjct: 181 DTAILYKDVIQQFEDWLVQHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLP 240

Query: 241 --------------------ATGMTTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADG 279
                               ATGM TMMRQLE+PLVGSHHLGIDDTKNIVRVLQRMV DG
Sbjct: 241 DYFMEWINIKDVYLNFYTKKATGMATMMRQLEMPLVGSHHLGIDDTKNIVRVLQRMVGDG 300

[Close]

BLAST of Carg17073-RA vs. ExPASy Swiss-Prot
Match: Q8W566 (Uncharacterized exonuclease domain-containing protein At3g15140 OS=Arabidopsis thaliana OX=3702 GN=At3g15140 PE=2 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.6e-69
Identity = 146/329 (44.38%), Postives = 200/329 (60.79%), Query Frame = 0


Query: 4   RAPLLKVSSF----YSVPCHSLVPLSLSAAICSSPRTPLAIRCHSSLPTAHDPSSSAPS- 63
           R  L ++S F    +S P  +L        +C+S  +       S   ++   SSS+PS 
Sbjct: 9   RVSLSRISPFRDTRFSYPA-TLALAHTKRIMCNSSHSVSPSPSPSDFSSSSSSSSSSPST 68

Query: 64  -ESLDVVHN-RWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRTQDIE 123
              ++   N RWRPMCLYYT  KCT MDDP H++ FNHD S+EL+V  A  +  ++Q+  
Sbjct: 69  FSLMETSENARWRPMCLYYTHGKCTKMDDPAHLEIFNHDCSKELRVAAADLERKKSQEFN 128

Query: 124 FFLVLDLEGKVEIIEFPVILVNAKTLDVTGFFH---RPSRMSERRINEYIEGKYGKFGVD 183
           FFLV+DLEGKVEI+EFP+++V+AKT++V   FH   RP++MSE+ IN+YIEGKYG+ GVD
Sbjct: 129 FFLVIDLEGKVEILEFPILIVDAKTMEVVDLFHRFVRPTKMSEQAINKYIEGKYGELGVD 188

Query: 184 RVWHDTAILYKDVIQQFEDWLVEHQLWRKELGGVLDRAAFAT------------------ 243
           RVWHDTAI +K V+++FE WL EH LW K+    L+ AAF T                  
Sbjct: 189 RVWHDTAIPFKQVVEEFEVWLAEHDLWDKDTDWGLNDAAFVTCGNWDIKTKIPEQCVVSN 248

Query: 244 --------------------------GMTTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRM 279
                                     GM +MMRQ  I L+GSHHLGIDDTKNI RV+QRM
Sbjct: 249 INLPPYFMEWINLKDVYLNFYGREARGMVSMMRQCGIKLMGSHHLGIDDTKNITRVVQRM 308

[Close]

BLAST of Carg17073-RA vs. ExPASy Swiss-Prot
Match: Q7TMF2 (3'-5' exoribonuclease 1 OS=Mus musculus OX=10090 GN=Eri1 PE=1 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 3.9e-07
Identity = 44/175 (25.14%), Postives = 72/175 (41.14%), Query Frame = 0


Query: 128 EIIEFPVILVNAKTLDVTGFFHRPSRMS-ERRINEYIEGKYGKFGVDRVWHDTAILYKDV 187
           EIIEFPV+L+N  TL++   F +  R     +++E+     G  G+ +   D A  +  V
Sbjct: 146 EIIEFPVVLLNTHTLEIEDTFQQYVRPEVNAQLSEFC---IGLTGITQDQVDRADAFPQV 205

Query: 188 IQQFEDWLVEHQL-------------------------------------W---RKELGG 247
           +++  +W+   +L                                     W   RK  G 
Sbjct: 206 LKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLSIQCRLSRLKHPAFAKKWINIRKSYGN 265

Query: 248 VLDRAAFATGMTTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADGAHLQITAR 262
                   T +T M+ +L +   G  H G+DD+KNI R+  RM+ DG  L+I  +
Sbjct: 266 FYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDDSKNIARIAVRMLQDGCELRINEK 317

[Close]

BLAST of Carg17073-RA vs. ExPASy Swiss-Prot
Match: Q5FVR4 (3'-5' exoribonuclease 1 OS=Rattus norvegicus OX=10116 GN=Eri1 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-06
Identity = 43/174 (24.71%), Postives = 70/174 (40.23%), Query Frame = 0


Query: 128 EIIEFPVILVNAKTLDVTGFFHRPSRMSERRINEYIEGKYGKFGVDRVWHDTAILYKDVI 187
           EIIEFPV+L+N  +L++   F +  R      ++  E   G  G+ +   D A  +  V+
Sbjct: 146 EIIEFPVVLLNTHSLEIEDTFQQYVRPEVN--SQLSEFCIGLTGITQDQVDRADAFPQVL 205

Query: 188 QQFEDWLVEHQL-------------------------------------W---RKELGGV 247
           ++  +W+   +L                                     W   RK  G  
Sbjct: 206 KKVIEWMKSKELGTKYKYCILTDGSWDMSKFLNIQCQLSRLKYPSFAKKWINIRKSYGNF 265

Query: 248 LDRAAFATGMTTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADGAHLQITAR 262
                  T +T M+ +L +   G  H G+DD+KNI R+  RM+ DG  L+I  +
Sbjct: 266 YKVPRSQTKLTIMLEKLGMDYDGRPHSGLDDSKNIARIAVRMLQDGCELRINEK 317

[Close]

BLAST of Carg17073-RA vs. ExPASy Swiss-Prot
Match: Q8IV48 (3'-5' exoribonuclease 1 OS=Homo sapiens OX=9606 GN=ERI1 PE=1 SV=3)

HSP 1 Score: 54.3 bits (129), Expect = 2.6e-06
Identity = 44/175 (25.14%), Postives = 73/175 (41.71%), Query Frame = 0


Query: 128 EIIEFPVILVNAKTLDVTGFFHRPSRMS-ERRINEYIEGKYGKFGVDRVWHDTAILYKDV 187
           EIIEFPV+L+N  TL++   F +  R     +++++        G+ +   D A  +  V
Sbjct: 150 EIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC---ISLTGITQDQVDRADTFPQV 209

Query: 188 IQQFEDWL--------------------------VEHQL-----------W---RKELGG 247
           +++  DW+                          ++ QL           W   RK  G 
Sbjct: 210 LKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGN 269

Query: 248 VLDRAAFATGMTTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADGAHLQITAR 262
                   T +T M+ +L +   G  H G+DD+KNI R+  RM+ DG  L+I  +
Sbjct: 270 FYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEK 321

[Close]

BLAST of Carg17073-RA vs. ExPASy TrEMBL
Match: A0A6J1F6E0 (uncharacterized exonuclease domain-containing protein At3g15140 OS=Cucurbita moschata OX=3662 GN=LOC111442549 PE=4 SV=1)

HSP 1 Score: 535.0 bits (1377), Expect = 1.8e-148
Identity = 274/325 (84.31%), Postives = 277/325 (85.23%), Query Frame = 0


Query: 1   MFVRAPLLKVSSFYSVPCHSLVPLSLSAAICSSPRTPLAIRCHSSLPTAHDPSSSAPSES 60
           MFVRAPLLKVSSFYS+PCHSLVPL LS+AICSSPRTPL+IRCHSSLPTAHDPSSSAPSES
Sbjct: 1   MFVRAPLLKVSSFYSIPCHSLVPLYLSSAICSSPRTPLSIRCHSSLPTAHDPSSSAPSES 60

Query: 61  LDVVHNRWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRTQDIEFFLV 120
           LDVVHNRWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRTQDIEFFLV
Sbjct: 61  LDVVHNRWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRTQDIEFFLV 120

Query: 121 LDLEGKVEIIEFPVILVNAKTLDVTGFFH---RPSRMSERRINEYIEGKYGKFGVDRVWH 180
           LDLEGKVEIIEFPVILVNAKTLDVTGFFH   RPSRMSERRINEYIEGKYGKFGVDRVWH
Sbjct: 121 LDLEGKVEIIEFPVILVNAKTLDVTGFFHRFVRPSRMSERRINEYIEGKYGKFGVDRVWH 180

Query: 181 DTAILYKDVIQQFEDWLVEHQLWRKELGGVLDRAAF------------------------ 240
           DTAILYKDVIQQFEDWLVEHQLWRKELGGVLDRAAF                        
Sbjct: 181 DTAILYKDVIQQFEDWLVEHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSNMKLP 240

Query: 241 --------------------ATGMTTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADG 279
                               ATGMTTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADG
Sbjct: 241 DYFMEWINIKDVYLNFYQKKATGMTTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADG 300

[Close]

BLAST of Carg17073-RA vs. ExPASy TrEMBL
Match: A0A6J1IG11 (uncharacterized exonuclease domain-containing protein At3g15140 OS=Cucurbita maxima OX=3661 GN=LOC111476907 PE=4 SV=1)

HSP 1 Score: 528.9 bits (1361), Expect = 1.3e-146
Identity = 270/325 (83.08%), Postives = 275/325 (84.62%), Query Frame = 0


Query: 1   MFVRAPLLKVSSFYSVPCHSLVPLSLSAAICSSPRTPLAIRCHSSLPTAHDPSSSAPSES 60
           MFVRAPLLKVSSFYS+PCHSLVPLSLS+AICSSPRTPLAIRCHSSLPTAH+PSSSAPSES
Sbjct: 1   MFVRAPLLKVSSFYSIPCHSLVPLSLSSAICSSPRTPLAIRCHSSLPTAHEPSSSAPSES 60

Query: 61  LDVVHNRWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRTQDIEFFLV 120
           LDVVHNRWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRTQDIEFFLV
Sbjct: 61  LDVVHNRWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRTQDIEFFLV 120

Query: 121 LDLEGKVEIIEFPVILVNAKTLDVTGFFH---RPSRMSERRINEYIEGKYGKFGVDRVWH 180
           LDLEGKVEIIEFPVILVNAKTLDVTGFFH   RPSRMSERRINEYIEGKYGKFGVDRVWH
Sbjct: 121 LDLEGKVEIIEFPVILVNAKTLDVTGFFHRFVRPSRMSERRINEYIEGKYGKFGVDRVWH 180

Query: 181 DTAILYKDVIQQFEDWLVEHQLWRKELGGVLDRAAF------------------------ 240
           DTAILYKDVIQQFEDWLVEHQ+WRK+LGGVLDRAAF                        
Sbjct: 181 DTAILYKDVIQQFEDWLVEHQIWRKDLGGVLDRAAFVTCGNWDIKTQVPHQCSVSNMKLP 240

Query: 241 --------------------ATGMTTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADG 279
                               ATGM  MMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADG
Sbjct: 241 DYFMEWINIKDVYLNFYQKKATGMAMMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADG 300

[Close]

BLAST of Carg17073-RA vs. ExPASy TrEMBL
Match: A0A0A0L4N2 (Exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G628930 PE=4 SV=1)

HSP 1 Score: 471.1 bits (1211), Expect = 3.2e-129
Identity = 237/325 (72.92%), Postives = 256/325 (78.77%), Query Frame = 0


Query: 1   MFVRAPLLKVSSFYSVPCHSLVPLSLSAAICSSPRTPLAIRCHSSLPTAHDPSSSAPSES 60
           MF+RA LLK SSFYS+PCH L+P+SLS++ICSSPRTP +IRCHS+ P +H+PSSSA SE 
Sbjct: 1   MFLRASLLKFSSFYSIPCHPLLPVSLSSSICSSPRTPFSIRCHSAFPLSHEPSSSASSEF 60

Query: 61  LDVVHNRWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRTQDIEFFLV 120
            DV  NRWRP CLY+T  +CTMMDDPLHIKKFNHDISRELQVDVA S HMRTQD ++FLV
Sbjct: 61  PDVADNRWRPTCLYFTHGRCTMMDDPLHIKKFNHDISRELQVDVARSNHMRTQDFDYFLV 120

Query: 121 LDLEGKVEIIEFPVILVNAKTLDVTGFFH---RPSRMSERRINEYIEGKYGKFGVDRVWH 180
           LDLEGKVEIIEFPVILVNAKT+ VTGFFH   RPSRMSE+RINEYIEGKYGKFGVDRVWH
Sbjct: 121 LDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWH 180

Query: 181 DTAILYKDVIQQFEDWLVEHQLWRKELGGVLDRAAF------------------------ 240
           DTAILYKDVIQQFEDWLV+HQLWRKELGGVLDRAAF                        
Sbjct: 181 DTAILYKDVIQQFEDWLVQHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLP 240

Query: 241 --------------------ATGMTTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADG 279
                               ATGM TMMRQLE+PLVGSHHLGIDDTKNIVRVLQRMV DG
Sbjct: 241 DYFMEWINIKDVYLNFYTKKATGMATMMRQLEMPLVGSHHLGIDDTKNIVRVLQRMVGDG 300

[Close]

BLAST of Carg17073-RA vs. ExPASy TrEMBL
Match: A0A1S3CJV9 (uncharacterized exonuclease domain-containing protein At3g15140 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501789 PE=4 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 1.0e-127
Identity = 235/325 (72.31%), Postives = 256/325 (78.77%), Query Frame = 0


Query: 1   MFVRAPLLKVSSFYSVPCHSLVPLSLSAAICSSPRTPLAIRCHSSLPTAHDPSSSAPSES 60
           MF+RA LLK+SSFYS+PCH L+P+SLS++ICSSPRTP +IRCHS+LP +H+PSSSAPS+ 
Sbjct: 1   MFLRASLLKLSSFYSIPCHPLLPVSLSSSICSSPRTPFSIRCHSALPISHEPSSSAPSQF 60

Query: 61  LDVVHNRWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRTQDIEFFLV 120
            DV  NRWRP CLY+T  +CTMMDDPLHIKKFNHDISRELQVDVA S HMRTQD+++FLV
Sbjct: 61  PDVADNRWRPTCLYFTHGRCTMMDDPLHIKKFNHDISRELQVDVARSNHMRTQDVDYFLV 120

Query: 121 LDLEGKVEIIEFPVILVNAKTLDVTGFFH---RPSRMSERRINEYIEGKYGKFGVDRVWH 180
           LDLEGKVEIIEFPVILVNAKT+ VTGFFH   RPSRMSE+RINEYIEGKYGKFGVDRVWH
Sbjct: 121 LDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEKRINEYIEGKYGKFGVDRVWH 180

Query: 181 DTAILYKDVIQQFEDWLVEHQLWRKELGGVLDRAAF------------------------ 240
           DTAILY DVIQQFEDWLV+HQLWRKE GGVLDRAAF                        
Sbjct: 181 DTAILYNDVIQQFEDWLVQHQLWRKERGGVLDRAAFVTCGNWDIKTQVPHQCNVSKMKLP 240

Query: 241 --------------------ATGMTTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADG 279
                               ATGM TMMRQLE+ LVGSHHLGIDDTKNIVRVLQRMV DG
Sbjct: 241 DYFMEWINIKDVYLNFYGKKATGMATMMRQLEMCLVGSHHLGIDDTKNIVRVLQRMVGDG 300

[Close]

BLAST of Carg17073-RA vs. ExPASy TrEMBL
Match: A0A6J1CCI3 (uncharacterized exonuclease domain-containing protein At3g15140 OS=Momordica charantia OX=3673 GN=LOC111010332 PE=4 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 1.7e-122
Identity = 237/328 (72.26%), Postives = 253/328 (77.13%), Query Frame = 0


Query: 1   MFVRAPLLKVSSFYSVPCHSLVPLSLSAAICSSPRTPLAIRCHSSLPTAHDPSSSA-PSE 60
           MF+RAPLLKVSSFYS+PC+ LVPLSL +++ SS RTP  IRCH+SLP AH+PSSSA P  
Sbjct: 1   MFLRAPLLKVSSFYSIPCYPLVPLSLYSSVFSSSRTPFPIRCHASLPAAHEPSSSAPPPH 60

Query: 61  SLDVVHNRWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRT--QDIEF 120
           S +   NRWRPMCLYYTQ KCTMMDDPLH+KKFNHDISR LQV+ A S H RT  QDI+F
Sbjct: 61  SPEAADNRWRPMCLYYTQGKCTMMDDPLHLKKFNHDISRVLQVN-ARSNHTRTQSQDIDF 120

Query: 121 FLVLDLEGKVEIIEFPVILVNAKTLDVTGFFH---RPSRMSERRINEYIEGKYGKFGVDR 180
           FLVLDLEGKVEIIEFPVILV+AKTL VTGFFH   RPS MSERRINEYIEGKYGKFGVDR
Sbjct: 121 FLVLDLEGKVEIIEFPVILVSAKTLGVTGFFHRFVRPSNMSERRINEYIEGKYGKFGVDR 180

Query: 181 VWHDTAILYKDVIQQFEDWLVEHQLWRKELGGVLDRAAF--------------------- 240
           VWHDTAI YK+VIQQFEDWLVEHQLW+KELGG LDRAAF                     
Sbjct: 181 VWHDTAISYKEVIQQFEDWLVEHQLWKKELGGCLDRAAFVTCGNWDIKTQVPHQCSVSNI 240

Query: 241 -----------------------ATGMTTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMV 279
                                  ATGMTTMMRQLEIPL+GSHHLGIDDTKNIVRVLQRMV
Sbjct: 241 ELPNYFMEWINIKDVYLNFYQKKATGMTTMMRQLEIPLLGSHHLGIDDTKNIVRVLQRMV 300

[Close]

BLAST of Carg17073-RA vs. TAIR 10
Match: AT3G15140.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 264.2 bits (674), Expect = 1.2e-70
Identity = 146/329 (44.38%), Postives = 200/329 (60.79%), Query Frame = 0


Query: 4   RAPLLKVSSF----YSVPCHSLVPLSLSAAICSSPRTPLAIRCHSSLPTAHDPSSSAPS- 63
           R  L ++S F    +S P  +L        +C+S  +       S   ++   SSS+PS 
Sbjct: 9   RVSLSRISPFRDTRFSYPA-TLALAHTKRIMCNSSHSVSPSPSPSDFSSSSSSSSSSPST 68

Query: 64  -ESLDVVHN-RWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRTQDIE 123
              ++   N RWRPMCLYYT  KCT MDDP H++ FNHD S+EL+V  A  +  ++Q+  
Sbjct: 69  FSLMETSENARWRPMCLYYTHGKCTKMDDPAHLEIFNHDCSKELRVAAADLERKKSQEFN 128

Query: 124 FFLVLDLEGKVEIIEFPVILVNAKTLDVTGFFH---RPSRMSERRINEYIEGKYGKFGVD 183
           FFLV+DLEGKVEI+EFP+++V+AKT++V   FH   RP++MSE+ IN+YIEGKYG+ GVD
Sbjct: 129 FFLVIDLEGKVEILEFPILIVDAKTMEVVDLFHRFVRPTKMSEQAINKYIEGKYGELGVD 188

Query: 184 RVWHDTAILYKDVIQQFEDWLVEHQLWRKELGGVLDRAAFAT------------------ 243
           RVWHDTAI +K V+++FE WL EH LW K+    L+ AAF T                  
Sbjct: 189 RVWHDTAIPFKQVVEEFEVWLAEHDLWDKDTDWGLNDAAFVTCGNWDIKTKIPEQCVVSN 248

Query: 244 --------------------------GMTTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRM 279
                                     GM +MMRQ  I L+GSHHLGIDDTKNI RV+QRM
Sbjct: 249 INLPPYFMEWINLKDVYLNFYGREARGMVSMMRQCGIKLMGSHHLGIDDTKNITRVVQRM 308

The following BLAST results are available for this feature:

BLAST of Carg17073-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024805.1	1.2e-157	100.00	putative exonuclease domain-containing protein, partial [Cucurbita argyrosperma ...	[more]
XP_022935722.1	3.8e-148	84.31	uncharacterized exonuclease domain-containing protein At3g15140 [Cucurbita mosch...	[more]
XP_023535410.1	1.4e-147	84.31	uncharacterized exonuclease domain-containing protein At3g15140 [Cucurbita pepo ...	[more]
XP_022976542.1	2.7e-146	83.08	uncharacterized exonuclease domain-containing protein At3g15140 [Cucurbita maxim...	[more]
XP_004146041.1	6.7e-129	72.92	uncharacterized exonuclease domain-containing protein At3g15140 isoform X1 [Cucu...	[more]

BLAST of Carg17073-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W566	1.6e-69	44.38	Uncharacterized exonuclease domain-containing protein At3g15140 OS=Arabidopsis t...	[more]
Q7TMF2	3.9e-07	25.14	3'-5' exoribonuclease 1 OS=Mus musculus OX=10090 GN=Eri1 PE=1 SV=2	[more]
Q5FVR4	1.1e-06	24.71	3'-5' exoribonuclease 1 OS=Rattus norvegicus OX=10116 GN=Eri1 PE=2 SV=1	[more]
Q8IV48	2.6e-06	25.14	3'-5' exoribonuclease 1 OS=Homo sapiens OX=9606 GN=ERI1 PE=1 SV=3	[more]

BLAST of Carg17073-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F6E0	1.8e-148	84.31	uncharacterized exonuclease domain-containing protein At3g15140 OS=Cucurbita mos...	[more]
A0A6J1IG11	1.3e-146	83.08	uncharacterized exonuclease domain-containing protein At3g15140 OS=Cucurbita max...	[more]
A0A0A0L4N2	3.2e-129	72.92	Exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G628930...	[more]
A0A1S3CJV9	1.0e-127	72.31	uncharacterized exonuclease domain-containing protein At3g15140 isoform X1 OS=Cu...	[more]
A0A6J1CCI3	1.7e-122	72.26	uncharacterized exonuclease domain-containing protein At3g15140 OS=Momordica cha...	[more]

BLAST of Carg17073-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15140.1	1.2e-70	44.38	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 105..211 e-value: 1.0E-15 score: 59.6
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 212..262 e-value: 1.4E-9 score: 39.9
None	No IPR available	PANTHER	PTHR23044:SF68	OS06G0353400 PROTEIN	coord: 214..278 coord: 39..215
None	No IPR available	PANTHER	PTHR23044	3'-5' EXONUCLEASE ERI1-RELATED	coord: 39..215 coord: 214..278
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 115..258

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg17073	Carg17073	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17073-RA:1	Carg17073-RA:1	exon
Carg17073-RA:2	Carg17073-RA:2	exon
Carg17073-RA:3	Carg17073-RA:3	exon
Carg17073-RA:4	Carg17073-RA:4	exon
Carg17073-RA:5	Carg17073-RA:5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17073-RA:cds	Carg17073-RA:cds_5	CDS
Carg17073-RA:cds	Carg17073-RA:cds_4	CDS
Carg17073-RA:cds	Carg17073-RA:cds_3	CDS
Carg17073-RA:cds	Carg17073-RA:cds_2	CDS
Carg17073-RA:cds	Carg17073-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg17073-RA	Carg17073-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000175	3'-5'-exoribonuclease activity