Carg16362-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16362-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr19: 6146223 .. 6146602 (+)
Sequence length380
RNA-Seq ExpressionCarg16362-RA
SyntenyCarg16362-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCTTCAGGGACGGGATGGCTTGAGTTGGGTTGGATGCTCCTTCGCCCTCGTAAATCCAAAGAGGCCGTGTGATACTAAAGCACGATCTATTAGATACAAAATTGAAAGTTTACATACACTTAGCATAGGATCCATTGTCATCATTGAGAATCTATTCTCTTTAGCCAGCCCCGTTCTTTGCCTCGAGAAGTCTGGATGACTCGTCTCTCCAATCAGAATAATACTTTTGAGGATGTTTCTGGATGTTTAATCTTTTAAACATGTTATTTGGGGCTGTAGATTCTTCAACGCTCTACGGTGCAAGTTTAACCAAAGTTATTAGGTACACGATTCCACTCATTATAGCTGTGTTCTTCTGCTGTATTCGGTCGGAAT

mRNA sequence

ATGACTCTTCAGGGACGGGATGGCTTGAGTTGGGTTGGATGCTCCTTCGCCCTCGTAAATCCAAAGAGGCCGTGTGATACTAAAGCACGATCTATTAGATACAAAATTGAAAGTTTACATACACTTAGCATAGGATCCATTGTCATCATTGAGAATCTATTCTCTTTAGCCAGCCCCGTTCTTTGCCTCGAGAAGTCTGGATGACTCGTCTCTCCAATCAGAATAATACTTTTGAGGATGTTTCTGGATGTTTAATCTTTTAAACATGTTATTTGGGGCTGTAGATTCTTCAACGCTCTACGGTGCAAGTTTAACCAAAGTTATTAGGTACACGATTCCACTCATTATAGCTGTGTTCTTCTGCTGTATTCGGTCGGAAT

Coding sequence (CDS)

ATGACTCTTCAGGGACGGGATGGCTTGAGTTGGGTTGGATGCTCCTTCGCCCTCGTAAATCCAAAGAGGCCGTGTGATACTAAAGCACGATCTATTAGATACAAAATTGAAAGTTTACATACACTTAGCATAGGATCCATTGTCATCATTGAGAATCTATTCTCTTTAGCCAGCCCCGTTCTTTGCCTCGAGAAGTCTGGATGA

Protein sequence

MTLQGRDGLSWVGCSFALVNPKRPCDTKARSIRYKIESLHTLSIGSIVIIENLFSLASPVLCLEKSG
Homology
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BLAST of Carg16362-RA vs. NCBI nr
Match: KAG7011637.1 (hypothetical protein SDJN02_26543, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 138.7 bits (348), Expect = 1.9e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MTLQGRDGLSWVGCSFALVNPKRPCDTKARSIRYKIESLHTLSIGSIVIIENLFSLASPV 60
          MTLQGRDGLSWVGCSFALVNPKRPCDTKARSIRYKIESLHTLSIGSIVIIENLFSLASPV
Sbjct: 1  MTLQGRDGLSWVGCSFALVNPKRPCDTKARSIRYKIESLHTLSIGSIVIIENLFSLASPV 60

Query: 61 LCLEKSG 68
          LCLEKSG
Sbjct: 61 LCLEKSG 67

The following BLAST results are available for this feature:
BLAST of Carg16362-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7011637.11.9e-29100.00hypothetical protein SDJN02_26543, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg16362-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16362-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16362-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg16362Carg16362gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg16362-RA:1Carg16362-RA:1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg16362-RA:cdsCarg16362-RA:cdsCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg16362-RA:three_prime_utrCarg16362-RA:three_prime_utrthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg16362-RACarg16362-RA-proteinpolypeptide