Carg16229-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16229-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein .
Location	Carg_Chr06: 2645787 .. 2647250 (+)
Sequence length	964
RNA-Seq Expression	Carg16229-RA
Synteny	Carg16229-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCCCTTTTGCAAAACCATTTTCTCGAGGACCCATTTGTTTGATTTGCTCCAAACAACTCACTGTTCATCAATTTACTCTGTTTCTCTTCAACCCCACCTCGATTATGGCCTCTCTGATGAACTTTCACCACTTCTTGCCATGAGGGTCGAGTTAACTTATCGAATTCAATGTTTCAAACTACCCCTTCTTCGCTTTTTCTCTGTATTTGTACCCTTTTTTTGCTGGATTTGATTACTTCTTGAAACCTGTGATATCGCTTTGGAGTTGGGAAAAAGTAACGCCGGCCCTTGTGTCTGGATTTGCTCGTATCAGCTGGCTTTGTCTCCTCAACGATGATCGATGTGATTTGTATGAAATTCCATTGAGATTTGCATTACTGTCGGGGAATTTTATCTGGTCTCTTTCTGGAGGGGTTCAGATTCTTTGTATGTCGACTGGTTAATCTTCAAATAGCTTCAATAGTGCAGTATTTTGGGTACTTCCTCTCCTTTTTGATTTAGCTTTCAACCAATGATTTGGATGACTAATAGTACATATATTGCGTTTACTGTTCTTGGATTTTCATAGCATTACCCCAACTCTGAAACTTCTGTAGATCTTTGAAACCCTTTTAATAGTTTCCTTAAACCCTTTTGTTCTGCTACAAATTTGAATTCAAGTTCAAATGCTTTGTTTAATGTATTTACAATCGATGAAGTTTGAGTTAGGCGTTGAGGTTTTAGTAAACATGTGGTTAGATGCCTACTGATGCTGCATTTTCCTCGCTCTGTTTCAATTTCTTGAAATTAAGGAGGTGATTCAGAAGACGAGGATAATCGGCAGAATCCTTGTCGTGGTGCTTTCTGATCGAAGACGAGTCGTTTTTTTTGATTCAAATGCAAGATGGAGAAAAGGAAAAGAATCACACAGTACAGGGAGAAACTAGATAAAACACTCAGATCTTCTGATCTGACAACCAAGGAGTCTGTTGAGGCCCTCGTGTCGAATCAACTTCGTCGTTTGAATTCGAAACACGAAACCGAAGGTCGGTGATGAACTGATGTGTCGGGATATTTAGATATCTTCCCATCATGTTGGTTAAGCCATCCATTTTGGAGGTTCTAATCTTTCGTTTATGTGTTGAAGGATGTAACGAAAACGTGTTACGTAAAAGAACTGCGGAGGTATCGAATTTTCTTGACATGTTGAGGAGTGCTTCCGGTAATGGTAATGATAGTAGCAGAGCTTCTGAGATGGAACATCATGAGTGGAAAGTACGTTATACTAGAATTTCGTCTATCTGATATTCATTCTAAGTGTCTATGAAGTTGTCGATTATATTCTTTTCAATATTTCAGGTGAAGCACGATGATGAAGAATTTCGGGTTATGTATCGTGAAGGACCGAAGGGCACTCCATTTCATACATTACTCGTTGAAGGCTTTGTAGATGGCCCGGTTGATATTTGTAAGCGTTACTGA

mRNA sequence

CTTTCCCTTTTGCAAAACCATTTTCTCGAGGACCCATTTGTTTGATTTGCTCCAAACAACTCACTGTTCATCAATTTACTCTGTTTCTCTTCAACCCCACCTCGATTATGGCCTCTCTGATGAACTTTCACCACTTCTTGCCATGAGGGTCGAGTTAACTTATCGAATTCAATGTTTCAAACTACCCCTTCTTCGCTTTTTCTCTGTATTTGTACCCTTTTTTTGCTGGATTTGATTACTTCTTGAAACCTGTGATATCGCTTTGGAGTTGGGAAAAAGTAACGCCGGCCCTTGTGTCTGGATTTGCTCGTATCAGCTGGCTTTGTCTCCTCAACGATGATCGATGTGATTTGTATGAAATTCCATTGAGATTTGCATTACTGTCGGGGAATTTTATCTGGTCTCTTTCTGGAGGGGTTCAGATTCTTTGTATGTCGACTGGTTAATCTTCAAATAGCTTCAATAGTGCAGTATTTTGGGAGGTGATTCAGAAGACGAGGATAATCGGCAGAATCCTTGTCGTGGTGCTTTCTGATCGAAGACGAGTCGTTTTTTTTGATTCAAATGCAAGATGGAGAAAAGGAAAAGAATCACACAGTACAGGGAGAAACTAGATAAAACACTCAGATCTTCTGATCTGACAACCAAGGAGTCTGTTGAGGCCCTCGTGTCGAATCAACTTCGTCGTTTGAATTCGAAACACGAAACCGAAGGATGTAACGAAAACGTGTTACGTAAAAGAACTGCGGAGGTATCGAATTTTCTTGACATGTTGAGGAGTGCTTCCGGTAATGGTAATGATAGTAGCAGAGCTTCTGAGATGGAACATCATGAGTGGAAAGTGAAGCACGATGATGAAGAATTTCGGGTTATGTATCGTGAAGGACCGAAGGGCACTCCATTTCATACATTACTCGTTGAAGGCTTTGTAGATGGCCCGGTTGATATTTGTAAGCGTTACTGA

Coding sequence (CDS)

ATGGAGAAAAGGAAAAGAATCACACAGTACAGGGAGAAACTAGATAAAACACTCAGATCTTCTGATCTGACAACCAAGGAGTCTGTTGAGGCCCTCGTGTCGAATCAACTTCGTCGTTTGAATTCGAAACACGAAACCGAAGGATGTAACGAAAACGTGTTACGTAAAAGAACTGCGGAGGTATCGAATTTTCTTGACATGTTGAGGAGTGCTTCCGGTAATGGTAATGATAGTAGCAGAGCTTCTGAGATGGAACATCATGAGTGGAAAGTGAAGCACGATGATGAAGAATTTCGGGTTATGTATCGTGAAGGACCGAAGGGCACTCCATTTCATACATTACTCGTTGAAGGCTTTGTAGATGGCCCGGTTGATATTTGTAAGCGTTACTGA

Protein sequence

MEKRKRITQYREKLDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAEVSNFLDMLRSASGNGNDSSRASEMEHHEWKVKHDDEEFRVMYREGPKGTPFHTLLVEGFVDGPVDICKRY

Homology

[Close]

BLAST of Carg16229-RA vs. NCBI nr
Match: KAG7028169.1 (hypothetical protein SDJN02_09349 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 259.6 bits (662), Expect = 1.4e-65
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MEKRKRITQYREKLDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE 60
           MEKRKRITQYREKLDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE
Sbjct: 1   MEKRKRITQYREKLDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE 60

Query: 61  VSNFLDMLRSASGNGNDSSRASEMEHHEWKVKHDDEEFRVMYREGPKGTPFHTLLVEGFV 120
           VSNFLDMLRSASGNGNDSSRASEMEHHEWKVKHDDEEFRVMYREGPKGTPFHTLLVEGFV
Sbjct: 61  VSNFLDMLRSASGNGNDSSRASEMEHHEWKVKHDDEEFRVMYREGPKGTPFHTLLVEGFV 120

Query: 121 DGPVDICKRY 131
           DGPVDICKRY
Sbjct: 121 DGPVDICKRY 130

[Close]

BLAST of Carg16229-RA vs. NCBI nr
Match: KAG6596632.1 (hypothetical protein SDJN03_09812, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 251.1 bits (640), Expect = 5.1e-63
Identity = 126/127 (99.21%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MEKRKRITQYREKLDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE 60
           MEKRKRITQYRE+LDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE
Sbjct: 1   MEKRKRITQYRERLDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE 60

Query: 61  VSNFLDMLRSASGNGNDSSRASEMEHHEWKVKHDDEEFRVMYREGPKGTPFHTLLVEGFV 120
           VSNFLDMLRSASGNGNDSSRASEMEHHEWKVKHDDEEFRVMYREGPKGTPFHTLLVEGFV
Sbjct: 61  VSNFLDMLRSASGNGNDSSRASEMEHHEWKVKHDDEEFRVMYREGPKGTPFHTLLVEGFV 120

Query: 121 DGPVDIC 128
           DGPVDIC
Sbjct: 121 DGPVDIC 127

[Close]

BLAST of Carg16229-RA vs. NCBI nr
Match: XP_022931446.1 (uncharacterized protein LOC111437548 isoform X2 [Cucurbita moschata])

HSP 1 Score: 248.8 bits (634), Expect = 2.5e-62
Identity = 124/127 (97.64%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MEKRKRITQYREKLDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE 60
           MEKRKRITQYRE+LDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE
Sbjct: 1   MEKRKRITQYRERLDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE 60

Query: 61  VSNFLDMLRSASGNGNDSSRASEMEHHEWKVKHDDEEFRVMYREGPKGTPFHTLLVEGFV 120
           VSNFLDMLRSASGNGNDSSRASEMEHHEWK+KHDDE+FRVMYREGPKGTPFHTLLVEGFV
Sbjct: 61  VSNFLDMLRSASGNGNDSSRASEMEHHEWKMKHDDEDFRVMYREGPKGTPFHTLLVEGFV 120

Query: 121 DGPVDIC 128
           DGPVDIC
Sbjct: 121 DGPVDIC 127

[Close]

BLAST of Carg16229-RA vs. NCBI nr
Match: XP_022931366.1 (uncharacterized protein LOC111437548 isoform X1 [Cucurbita moschata])

HSP 1 Score: 248.8 bits (634), Expect = 2.5e-62
Identity = 124/127 (97.64%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MEKRKRITQYREKLDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE 60
           MEKRKRITQYRE+LDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE
Sbjct: 1   MEKRKRITQYRERLDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE 60

Query: 61  VSNFLDMLRSASGNGNDSSRASEMEHHEWKVKHDDEEFRVMYREGPKGTPFHTLLVEGFV 120
           VSNFLDMLRSASGNGNDSSRASEMEHHEWK+KHDDE+FRVMYREGPKGTPFHTLLVEGFV
Sbjct: 61  VSNFLDMLRSASGNGNDSSRASEMEHHEWKMKHDDEDFRVMYREGPKGTPFHTLLVEGFV 120

Query: 121 DGPVDIC 128
           DGPVDIC
Sbjct: 121 DGPVDIC 127

[Close]

BLAST of Carg16229-RA vs. NCBI nr
Match: XP_023539675.1 (uncharacterized protein LOC111800288 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 246.1 bits (627), Expect = 1.6e-61
Identity = 123/127 (96.85%), Postives = 126/127 (99.21%), Query Frame = 0


Query: 1   MEKRKRITQYREKLDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE 60
           MEKRKRITQYRE+LDKTLRS DLTTKESVEALVSNQLRRL+SKHETEGCNENVLRKRTAE
Sbjct: 1   MEKRKRITQYRERLDKTLRSPDLTTKESVEALVSNQLRRLHSKHETEGCNENVLRKRTAE 60

Query: 61  VSNFLDMLRSASGNGNDSSRASEMEHHEWKVKHDDEEFRVMYREGPKGTPFHTLLVEGFV 120
           VSNFLDMLRSASGNGNDSSRASEMEHHEWK+KHDDEEFRVMYREGPKGTPFHTLLVEGFV
Sbjct: 61  VSNFLDMLRSASGNGNDSSRASEMEHHEWKMKHDDEEFRVMYREGPKGTPFHTLLVEGFV 120

Query: 121 DGPVDIC 128
           DGPVDIC
Sbjct: 121 DGPVDIC 127

[Close]

BLAST of Carg16229-RA vs. ExPASy TrEMBL
Match: A0A6J1ETN8 (uncharacterized protein LOC111437548 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437548 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.2e-62
Identity = 124/127 (97.64%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MEKRKRITQYREKLDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE 60
           MEKRKRITQYRE+LDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE
Sbjct: 1   MEKRKRITQYRERLDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE 60

Query: 61  VSNFLDMLRSASGNGNDSSRASEMEHHEWKVKHDDEEFRVMYREGPKGTPFHTLLVEGFV 120
           VSNFLDMLRSASGNGNDSSRASEMEHHEWK+KHDDE+FRVMYREGPKGTPFHTLLVEGFV
Sbjct: 61  VSNFLDMLRSASGNGNDSSRASEMEHHEWKMKHDDEDFRVMYREGPKGTPFHTLLVEGFV 120

Query: 121 DGPVDIC 128
           DGPVDIC
Sbjct: 121 DGPVDIC 127

[Close]

BLAST of Carg16229-RA vs. ExPASy TrEMBL
Match: A0A6J1ETH2 (uncharacterized protein LOC111437548 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437548 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.2e-62
Identity = 124/127 (97.64%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MEKRKRITQYREKLDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE 60
           MEKRKRITQYRE+LDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE
Sbjct: 1   MEKRKRITQYRERLDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE 60

Query: 61  VSNFLDMLRSASGNGNDSSRASEMEHHEWKVKHDDEEFRVMYREGPKGTPFHTLLVEGFV 120
           VSNFLDMLRSASGNGNDSSRASEMEHHEWK+KHDDE+FRVMYREGPKGTPFHTLLVEGFV
Sbjct: 61  VSNFLDMLRSASGNGNDSSRASEMEHHEWKMKHDDEDFRVMYREGPKGTPFHTLLVEGFV 120

Query: 121 DGPVDIC 128
           DGPVDIC
Sbjct: 121 DGPVDIC 127

[Close]

BLAST of Carg16229-RA vs. ExPASy TrEMBL
Match: A0A6J1KTW5 (uncharacterized protein LOC111498625 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111498625 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.5e-60
Identity = 120/127 (94.49%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MEKRKRITQYREKLDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE 60
           MEKRKRITQYRE+LDKTLRS DLTTKESVEALV NQLRRLN KHETEGCNENV+RKRTAE
Sbjct: 1   MEKRKRITQYRERLDKTLRSPDLTTKESVEALVLNQLRRLNLKHETEGCNENVIRKRTAE 60

Query: 61  VSNFLDMLRSASGNGNDSSRASEMEHHEWKVKHDDEEFRVMYREGPKGTPFHTLLVEGFV 120
           VSNFLDMLRS SGNGNDSSRASEMEHHEWK+KHDDEEFRVMYREGPKGTPFHTLLVEGFV
Sbjct: 61  VSNFLDMLRSTSGNGNDSSRASEMEHHEWKMKHDDEEFRVMYREGPKGTPFHTLLVEGFV 120

Query: 121 DGPVDIC 128
           DGPVDIC
Sbjct: 121 DGPVDIC 127

[Close]

BLAST of Carg16229-RA vs. ExPASy TrEMBL
Match: A0A6J1KVQ9 (uncharacterized protein LOC111498625 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111498625 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.5e-60
Identity = 120/127 (94.49%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MEKRKRITQYREKLDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE 60
           MEKRKRITQYRE+LDKTLRS DLTTKESVEALV NQLRRLN KHETEGCNENV+RKRTAE
Sbjct: 1   MEKRKRITQYRERLDKTLRSPDLTTKESVEALVLNQLRRLNLKHETEGCNENVIRKRTAE 60

Query: 61  VSNFLDMLRSASGNGNDSSRASEMEHHEWKVKHDDEEFRVMYREGPKGTPFHTLLVEGFV 120
           VSNFLDMLRS SGNGNDSSRASEMEHHEWK+KHDDEEFRVMYREGPKGTPFHTLLVEGFV
Sbjct: 61  VSNFLDMLRSTSGNGNDSSRASEMEHHEWKMKHDDEEFRVMYREGPKGTPFHTLLVEGFV 120

Query: 121 DGPVDIC 128
           DGPVDIC
Sbjct: 121 DGPVDIC 127

[Close]

BLAST of Carg16229-RA vs. ExPASy TrEMBL
Match: A0A6J1KY49 (uncharacterized protein LOC111498625 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498625 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.5e-60
Identity = 120/127 (94.49%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MEKRKRITQYREKLDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE 60
           MEKRKRITQYRE+LDKTLRS DLTTKESVEALV NQLRRLN KHETEGCNENV+RKRTAE
Sbjct: 1   MEKRKRITQYRERLDKTLRSPDLTTKESVEALVLNQLRRLNLKHETEGCNENVIRKRTAE 60

Query: 61  VSNFLDMLRSASGNGNDSSRASEMEHHEWKVKHDDEEFRVMYREGPKGTPFHTLLVEGFV 120
           VSNFLDMLRS SGNGNDSSRASEMEHHEWK+KHDDEEFRVMYREGPKGTPFHTLLVEGFV
Sbjct: 61  VSNFLDMLRSTSGNGNDSSRASEMEHHEWKMKHDDEEFRVMYREGPKGTPFHTLLVEGFV 120

Query: 121 DGPVDIC 128
           DGPVDIC
Sbjct: 121 DGPVDIC 127

[Close]

BLAST of Carg16229-RA vs. TAIR 10
Match: AT5G06440.2 (BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G11720.3); Has 157 Blast hits to 155 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 6; Plants - 99; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). )

HSP 1 Score: 112.1 bits (279), Expect = 3.4e-25
Identity = 62/127 (48.82%), Postives = 85/127 (66.93%), Query Frame = 0


Query: 1   MEKRKRITQYREKLDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE 60
           M+K++ I  YR+KLDKTL S +LT  E++++L+ NQL         E C+EN+L KRT +
Sbjct: 1   MQKKREICGYRDKLDKTLSSPELTNHETLKSLLRNQL---------EECDENILDKRTDD 60

Query: 61  VSNFLDMLRSASGNGNDSSRASEMEHHEWKVKHDDEEFRVMYREGPKGTPFHTLLVEGFV 120
           VS  L  LRS S   +  S+ +     +WK+KHD E+ RVMYREG  G+PFHTLLVEG++
Sbjct: 61  VSKLLSKLRSVSMTDHQVSKLT--NDGDWKLKHDLEDCRVMYREGLDGSPFHTLLVEGYM 116

Query: 121 DGPVDIC 128
           DGP+  C
Sbjct: 121 DGPIHEC 116

[Close]

BLAST of Carg16229-RA vs. TAIR 10
Match: AT5G06440.3 (BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G11720.3); Has 157 Blast hits to 155 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 6; Plants - 99; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). )

HSP 1 Score: 112.1 bits (279), Expect = 3.4e-25
Identity = 62/127 (48.82%), Postives = 85/127 (66.93%), Query Frame = 0


Query: 1   MEKRKRITQYREKLDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE 60
           M+K++ I  YR+KLDKTL S +LT  E++++L+ NQL         E C+EN+L KRT +
Sbjct: 1   MQKKREICGYRDKLDKTLSSPELTNHETLKSLLRNQL---------EECDENILDKRTDD 60

Query: 61  VSNFLDMLRSASGNGNDSSRASEMEHHEWKVKHDDEEFRVMYREGPKGTPFHTLLVEGFV 120
           VS  L  LRS S   +  S+ +     +WK+KHD E+ RVMYREG  G+PFHTLLVEG++
Sbjct: 61  VSKLLSKLRSVSMTDHQVSKLT--NDGDWKLKHDLEDCRVMYREGLDGSPFHTLLVEGYM 116

Query: 121 DGPVDIC 128
           DGP+  C
Sbjct: 121 DGPIHEC 116

[Close]

BLAST of Carg16229-RA vs. TAIR 10
Match: AT5G06440.4 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G11720.3). )

HSP 1 Score: 112.1 bits (279), Expect = 3.4e-25
Identity = 62/127 (48.82%), Postives = 85/127 (66.93%), Query Frame = 0


Query: 1   MEKRKRITQYREKLDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE 60
           M+K++ I  YR+KLDKTL S +LT  E++++L+ NQL         E C+EN+L KRT +
Sbjct: 1   MQKKREICGYRDKLDKTLSSPELTNHETLKSLLRNQL---------EECDENILDKRTDD 60

Query: 61  VSNFLDMLRSASGNGNDSSRASEMEHHEWKVKHDDEEFRVMYREGPKGTPFHTLLVEGFV 120
           VS  L  LRS S   +  S+ +     +WK+KHD E+ RVMYREG  G+PFHTLLVEG++
Sbjct: 61  VSKLLSKLRSVSMTDHQVSKLT--NDGDWKLKHDLEDCRVMYREGLDGSPFHTLLVEGYM 116

Query: 121 DGPVDIC 128
           DGP+  C
Sbjct: 121 DGPIHEC 116

[Close]

BLAST of Carg16229-RA vs. TAIR 10
Match: AT3G11720.1 (Polyketide cyclase/dehydrase and lipid transport superfamily protein )

HSP 1 Score: 107.5 bits (267), Expect = 8.5e-24
Identity = 57/128 (44.53%), Postives = 88/128 (68.75%), Query Frame = 0


Query: 1   MEKRKRITQYREKLDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE 60
           MEK++ +++YRE+L++TL S +L  +++++ LV  QL         E C+ ++L +R A 
Sbjct: 1   MEKKRDVSEYRERLNETLSSPELINEQTLKTLVRKQL--------NEECSVDILDQRVAA 60

Query: 61  VSNFLDMLRSASGNGNDSSRAS-EMEHHEWKVKHDDEEFRVMYREGPKGTPFHTLLVEGF 120
           +S+ ++ LRS S    D S++S E  + +WKVKHDD++ RVMYREG KG+PFHTLLVEG 
Sbjct: 61  LSSTIEKLRSVSTKDQDLSKSSTEASYGDWKVKHDDKDCRVMYREGLKGSPFHTLLVEGC 120

Query: 121 VDGPVDIC 128
            DG ++ C
Sbjct: 121 TDGTIEDC 120

[Close]

BLAST of Carg16229-RA vs. TAIR 10
Match: AT3G11720.2 (Polyketide cyclase/dehydrase and lipid transport superfamily protein )

HSP 1 Score: 107.5 bits (267), Expect = 8.5e-24
Identity = 57/128 (44.53%), Postives = 88/128 (68.75%), Query Frame = 0


Query: 1   MEKRKRITQYREKLDKTLRSSDLTTKESVEALVSNQLRRLNSKHETEGCNENVLRKRTAE 60
           MEK++ +++YRE+L++TL S +L  +++++ LV  QL         E C+ ++L +R A 
Sbjct: 1   MEKKRDVSEYRERLNETLSSPELINEQTLKTLVRKQL--------NEECSVDILDQRVAA 60

Query: 61  VSNFLDMLRSASGNGNDSSRAS-EMEHHEWKVKHDDEEFRVMYREGPKGTPFHTLLVEGF 120
           +S+ ++ LRS S    D S++S E  + +WKVKHDD++ RVMYREG KG+PFHTLLVEG 
Sbjct: 61  LSSTIEKLRSVSTKDQDLSKSSTEASYGDWKVKHDDKDCRVMYREGLKGSPFHTLLVEGC 120

Query: 121 VDGPVDIC 128
            DG ++ C
Sbjct: 121 TDGTIEDC 120

The following BLAST results are available for this feature:

BLAST of Carg16229-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028169.1	1.4e-65	100.00	hypothetical protein SDJN02_09349 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6596632.1	5.1e-63	99.21	hypothetical protein SDJN03_09812, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022931446.1	2.5e-62	97.64	uncharacterized protein LOC111437548 isoform X2 [Cucurbita moschata]	[more]
XP_022931366.1	2.5e-62	97.64	uncharacterized protein LOC111437548 isoform X1 [Cucurbita moschata]	[more]
XP_023539675.1	1.6e-61	96.85	uncharacterized protein LOC111800288 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg16229-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg16229-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ETN8	1.2e-62	97.64	uncharacterized protein LOC111437548 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1ETH2	1.2e-62	97.64	uncharacterized protein LOC111437548 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KTW5	2.5e-60	94.49	uncharacterized protein LOC111498625 isoform X4 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KVQ9	2.5e-60	94.49	uncharacterized protein LOC111498625 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KY49	2.5e-60	94.49	uncharacterized protein LOC111498625 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Carg16229-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06440.2	3.4e-25	48.82	BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lip...	[more]
AT5G06440.3	3.4e-25	48.82	BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lip...	[more]
AT5G06440.4	3.4e-25	48.82	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT3G11720.1	8.5e-24	44.53	Polyketide cyclase/dehydrase and lipid transport superfamily protein	[more]
AT3G11720.2	8.5e-24	44.53	Polyketide cyclase/dehydrase and lipid transport superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..89
None	No IPR available	PANTHER	PTHR34560	POLYKETIDE CYCLASE/DEHYDRASE/LIPID TRANSPORT SUPERFAMILY PROTEIN	coord: 1..126
None	No IPR available	PANTHER	PTHR34560:SF2	START-2 DOMAIN PROTEIN	coord: 1..126

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg16229	Carg16229	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg16229-RA:1	Carg16229-RA:1	exon
Carg16229-RA:2	Carg16229-RA:2	exon
Carg16229-RA:3	Carg16229-RA:3	exon
Carg16229-RA:4	Carg16229-RA:4	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg16229-RA:five_prime_utr	Carg16229-RA:five_prime_utr	five_prime_UTR
Carg16229-RA:five_prime_utr	Carg16229-RA:five_prime_utr_2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg16229-RA:cds	Carg16229-RA:cds	CDS
Carg16229-RA:cds	Carg16229-RA:cds_2	CDS
Carg16229-RA:cds	Carg16229-RA:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg16229-RA	Carg16229-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity