Carg15614-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg15614-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 11145299 .. 11146051 (-)
Sequence length417
RNA-Seq ExpressionCarg15614-RA
SyntenyCarg15614-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGTATGGTACAATCGTCGTCTCCTCTCTCTCTCTCTCTATCTTCCTCTCGGTCTAGAATCCTGGTTGCTGTTAACAACTCCGAAGGGGCCTCATACGAGCTCAGGGTTGCAGAGAAACCCTCGTGCTCTCTCTCTCCCTCTCTTTCGCCGGACCGCCGTTGAATCGCTAAACGACGGCGGTGTTTTCGTTCAACGATCTTGTCTCTTCCGTCGCTTCTGTTCTTCTTCTAATGCCCTTCGTTTTCTCTTCTTGCTTTGCTCGCCGCTAATTCCAGAGCCGAGTATCCTCGCTCTGACTAATTCAAGCATTCCATGGCGCTTTCTTGATCAATTCGTCCGAGAATACTCGGTAACCTATTCGTTTGTTGCTTCTTTACTGCTTTGTGTTTGTTTGTTTGTTCCTTTCCCTCCCTAGTTTCTGGGACTTTGTTTTGTTGTGCACCTGGAGAATTTTGAGTTGTTGTGGTTTAGGTTAATTTAGTTTGTCATTGAAGTGATGTATTGTTGGGATTTATTGGACCTATTCGATGCTGAATAATTTGAAGTATGTTATTAAGTTGTGAAGTAGTGGGGTTTGATTTTCGTTAGGGAATAGATGATTAACGAATGCGGCTGCGTTAATTCCGTTTGTTTTTGGTTCTCGTTGTTCGAGGTAATTGATTTATTTCTTTCTTTGTTTCATTAGGTTAAAATAACTCAATATAGTGTTTCAAGTTCTGGATACAAGACCGTAGCTACTTCTAAGGAATAA

mRNA sequence

TTGGTATGGTACAATCGTCGTCTCCTCTCTCTCTCTCTCTATCTTCCTCTCGGTCTAGAATCCTGGTTGCTGTTAACAACTCCGAAGGGGCCTCATACGAGCTCAGGGTTGCAGAGAAACCCTCGTGCTCTCTCTCTCCCTCTCTTTCGCCGGACCGCCGTTGAATCGCTAAACGACGGCGGTGTTTTCGTTCAACGATCTTGTCTCTTCCGTCGCTTCTGTTCTTCTTCTAATGCCCTTCGTTTTCTCTTCTTGCTTTGCTCGCCGCTAATTCCAGAGCCGAGTATCCTCGCTCTGACTAATTCAAGCATTCCATGGCGCTTTCTTGATCAATTCGTCCGAGAATACTCGGTTAAAATAACTCAATATAGTGTTTCAAGTTCTGGATACAAGACCGTAGCTACTTCTAAGGAATAA

Coding sequence (CDS)

TTGGTATGGTACAATCGTCGTCTCCTCTCTCTCTCTCTCTATCTTCCTCTCGGTCTAGAATCCTGGTTGCTGTTAACAACTCCGAAGGGGCCTCATACGAGCTCAGGGTTGCAGAGAAACCCTCGTGCTCTCTCTCTCCCTCTCTTTCGCCGGACCGCCGTTGAATCGCTAAACGACGGCGGTGTTTTCGTTCAACGATCTTGTCTCTTCCGTCGCTTCTGTTCTTCTTCTAATGCCCTTCGTTTTCTCTTCTTGCTTTGCTCGCCGCTAATTCCAGAGCCGAGTATCCTCGCTCTGACTAATTCAAGCATTCCATGGCGCTTTCTTGATCAATTCGTCCGAGAATACTCGGTTAAAATAACTCAATATAGTGTTTCAAGTTCTGGATACAAGACCGTAGCTACTTCTAAGGAATAA

Protein sequence

LVWYNRRLLSLSLYLPLGLESWLLLTTPKGPHTSSGLQRNPRALSLPLFRRTAVESLNDGGVFVQRSCLFRRFCSSSNALRFLFLLCSPLIPEPSILALTNSSIPWRFLDQFVREYSVKITQYSVSSSGYKTVATSKE
Homology
[Close]
BLAST of Carg15614-RA vs. NCBI nr
Match: KAG7022716.1 (hypothetical protein SDJN02_16450, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 275.4 bits (703), Expect = 2.7e-70
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 

Query: 1   LVWYNRRLLSLSLYLPLGLESWLLLTTPKGPHTSSGLQRNPRALSLPLFRRTAVESLNDG 60
           LVWYNRRLLSLSLYLPLGLESWLLLTTPKGPHTSSGLQRNPRALSLPLFRRTAVESLNDG
Sbjct: 1   LVWYNRRLLSLSLYLPLGLESWLLLTTPKGPHTSSGLQRNPRALSLPLFRRTAVESLNDG 60

Query: 61  GVFVQRSCLFRRFCSSSNALRFLFLLCSPLIPEPSILALTNSSIPWRFLDQFVREYSVKI 120
           GVFVQRSCLFRRFCSSSNALRFLFLLCSPLIPEPSILALTNSSIPWRFLDQFVREYSVKI
Sbjct: 61  GVFVQRSCLFRRFCSSSNALRFLFLLCSPLIPEPSILALTNSSIPWRFLDQFVREYSVKI 120

Query: 121 TQYSVSSSGYKTVATSKE 139
           TQYSVSSSGYKTVATSKE
Sbjct: 121 TQYSVSSSGYKTVATSKE 138

[Close]
BLAST of Carg15614-RA vs. NCBI nr
Match: KAG6588948.1 (putative galactinol--sucrose galactosyltransferase 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 205.3 bits (521), Expect = 3.4e-49
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 36  GLQRNPRALSLPLFRRTAVESLNDGGVFVQRSCLFRRFCSSSNALRFLFLLCSPLIPEPS 95
           GLQRNPRALSLPLFRRTAVESLNDGGVFVQRSCLFRRFCSSSNALRFLFLLCSPLIPEPS
Sbjct: 770 GLQRNPRALSLPLFRRTAVESLNDGGVFVQRSCLFRRFCSSSNALRFLFLLCSPLIPEPS 829

Query: 96  ILALTNSSIPWRFLDQFVREYSVKITQYSVSSSGYKTVATSKE 139
           ILALTNSSIPWRFLDQFVREYSVKITQYSVSSSGYKTVATSKE
Sbjct: 830 ILALTNSSIPWRFLDQFVREYSVKITQYSVSSSGYKTVATSKE 872

The following BLAST results are available for this feature:
BLAST of Carg15614-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022716.12.7e-70100.00hypothetical protein SDJN02_16450, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6588948.13.4e-49100.00putative galactinol--sucrose galactosyltransferase 5, partial [Cucurbita argyros... [more]
BLAST of Carg15614-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15614-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15614-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg15614Carg15614gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg15614-RA:2Carg15614-RA:2exon
Carg15614-RA:1Carg15614-RA:1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg15614-RA:cdsCarg15614-RA:cds_2CDS
Carg15614-RA:cdsCarg15614-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg15614-RACarg15614-RA-proteinpolypeptide