Carg15141-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg15141-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr16: 705960 .. 706998 (+)
Sequence length	422
RNA-Seq Expression	Carg15141-RA
Synteny	Carg15141-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTCTTCTCCTTCTTCCAACTCCTGTTTGGTTCTTGATTTCGTATACTCCTACCCATGGAGTCGCACGTGCAATTCAGCGAAACGAAGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTGCGATCAATGTTCAAAAATCGGAACTATCGCCGCCGTCTACGGCTGGACCGCCACCTGTCGGACACCGCAGACTCAACCCTAGATTCGCCTCAGAAGAACAGAAAAAAGCATTCCATCTCCGGTGAGTTTAATGTTAGCGTTTTTTTTTGTCAGTCATTTTGTACGCCTTTAAGCCTTGTTTGGATGCACGAATATAATGAACGCGAATAATAGGATTAGGGTTGGAGTAGTTCTTGGTTAACGTTAAAGACGCATTATTTTCCTATATTTGGGGTTTTTTTTTTTTTTTTTTTTTTTTTAAATTTTATTTTGACTCAAATGGACCAACCAACCAAACAGCGCCTAAACAACACGACTAAAGCGGGAATAGTGAATATTCCCTGTGAAGATATTTATGTGTGATTTATATATCACAATAAAAATCAATTTTCTTTTTTGTTATTTATTTATTTATTTTCTTTTTAATGACTTACGGCTATGATCCAGTAGGTACCAGAATGGACGGTAGATCTAGCAGAAGATCAAGACGGATACCATCTCTACCGCACACTTCAATTCAAGATCAGGTCATTATAAATATGTGCAACTCTCGTCTTTATTTCCTTTTAATCTTATCTTTTTCAATCAAAATTATGCTCTTTTTGCGGCTTATTTCAGCATTTGTTGTAATGCCACGTGGATATAAACTAATAACTTATTTAGGTTTAATTAAATTTAAATACAAAATTTTCTCAAGTATTTGATATTTTAAACAATAATATAATATTTATAGTCAAATTATTAAAATAAAATGGCATGCTTATGTGGCACGGCAGGTGGTCCCACAGATGGAAGAGAGAGCAGTTGAGGATGAAGATGAGAGAGACCATCCCATGTCACCTGTCAACTAA

mRNA sequence

AATTCTTCTCCTTCTTCCAACTCCTGTTTGGTTCTTGATTTCGTATACTCCTACCCATGGAGTCGCACGTGCAATTCAGCGAAACGAAGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTGCGATCAATGTTCAAAAATCGGAACTATCGCCGCCGTCTACGGCTGGACCGCCACCTGTCGGACACCGCAGACTCAACCCTAGATTCGCCTCAGAAGAACAGAAAAAAGCATTCCATCTCCGGTACCAGAATGGACGGTAGATCTAGCAGAAGATCAAGACGGATACCATCTCTACCGCACACTTCAATTCAAGATCAGGTGGTCCCACAGATGGAAGAGAGAGCAGTTGAGGATGAAGATGAGAGAGACCATCCCATGTCACCTGTCAACTAA

Coding sequence (CDS)

ATGGAGTCGCACGTGCAATTCAGCGAAACGAAGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTGCGATCAATGTTCAAAAATCGGAACTATCGCCGCCGTCTACGGCTGGACCGCCACCTGTCGGACACCGCAGACTCAACCCTAGATTCGCCTCAGAAGAACAGAAAAAAGCATTCCATCTCCGGTACCAGAATGGACGGTAGATCTAGCAGAAGATCAAGACGGATACCATCTCTACCGCACACTTCAATTCAAGATCAGGTGGTCCCACAGATGGAAGAGAGAGCAGTTGAGGATGAAGATGAGAGAGACCATCCCATGTCACCTGTCAACTAA

Protein sequence

MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDSPQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSPVN

Homology

[Close]

BLAST of Carg15141-RA vs. NCBI nr
Match: KAG7014778.1 (hypothetical protein SDJN02_22407 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238.4 bits (607), Expect = 3.2e-59
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSPV 120
           PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSPV
Sbjct: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSPV 120

Query: 121 N 122
           N
Sbjct: 121 N 121

[Close]

BLAST of Carg15141-RA vs. NCBI nr
Match: XP_022923140.1 (uncharacterized protein LOC111430892 isoform X2 [Cucurbita moschata])

HSP 1 Score: 236.9 bits (603), Expect = 9.2e-59
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRL+LDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLQLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSPV 120
           PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSPV
Sbjct: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSPV 120

Query: 121 N 122
           N
Sbjct: 121 N 121

[Close]

BLAST of Carg15141-RA vs. NCBI nr
Match: XP_022984701.1 (uncharacterized protein LOC111482903 isoform X2 [Cucurbita maxima])

HSP 1 Score: 235.3 bits (599), Expect = 2.7e-58
Identity = 119/121 (98.35%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRN+RRRLRLDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSPV 120
           PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHP+SPV
Sbjct: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPV 120

Query: 121 N 122
           N
Sbjct: 121 N 121

[Close]

BLAST of Carg15141-RA vs. NCBI nr
Match: KAG6576732.1 (hypothetical protein SDJN03_24306, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 232.6 bits (592), Expect = 1.7e-57
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60
           MESHVQFS+TKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSQTKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSIS-GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120
           PQKNRKKHSIS GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP
Sbjct: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120

Query: 121 VN 122
           VN
Sbjct: 121 VN 122

[Close]

BLAST of Carg15141-RA vs. NCBI nr
Match: XP_022923139.1 (uncharacterized protein LOC111430892 isoform X1 [Cucurbita moschata])

HSP 1 Score: 232.3 bits (591), Expect = 2.3e-57
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRL+LDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLQLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSIS-GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120
           PQKNRKKHSIS GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP
Sbjct: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120

Query: 121 VN 122
           VN
Sbjct: 121 VN 122

[Close]

BLAST of Carg15141-RA vs. ExPASy TrEMBL
Match: A0A6J1EAV1 (uncharacterized protein LOC111430892 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430892 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.5e-59
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRL+LDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLQLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSPV 120
           PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSPV
Sbjct: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSPV 120

Query: 121 N 122
           N
Sbjct: 121 N 121

[Close]

BLAST of Carg15141-RA vs. ExPASy TrEMBL
Match: A0A6J1J606 (uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.3e-58
Identity = 119/121 (98.35%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRN+RRRLRLDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSPV 120
           PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHP+SPV
Sbjct: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPV 120

Query: 121 N 122
           N
Sbjct: 121 N 121

[Close]

BLAST of Carg15141-RA vs. ExPASy TrEMBL
Match: A0A6J1E5I2 (uncharacterized protein LOC111430892 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430892 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.1e-57
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRL+LDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLQLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSIS-GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120
           PQKNRKKHSIS GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP
Sbjct: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120

Query: 121 VN 122
           VN
Sbjct: 121 VN 122

[Close]

BLAST of Carg15141-RA vs. ExPASy TrEMBL
Match: A0A6J1JBA6 (uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.2e-57
Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRN+RRRLRLDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSIS-GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120
           PQKNRKKHSIS GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHP+SP
Sbjct: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP 120

Query: 121 VN 122
           VN
Sbjct: 121 VN 122

[Close]

BLAST of Carg15141-RA vs. ExPASy TrEMBL
Match: A0A6J1CHV7 (uncharacterized protein LOC111011640 OS=Momordica charantia OX=3673 GN=LOC111011640 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.0e-42
Identity = 98/123 (79.67%), Postives = 107/123 (86.99%), Query Frame = 0


Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNY-RRRLRLDRHLSDTADSTLD 60
           MESHVQF+ET   WTNEKHMHFLNSMEASFVRSMF+NR + RRRLRLDRHL DT+DSTLD
Sbjct: 27  MESHVQFNETGSCWTNEKHMHFLNSMEASFVRSMFENRTHRRRRLRLDRHLPDTSDSTLD 86

Query: 61  SPQKNRKKHSISG-TRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMS 120
           SPQK+RK H+ SG   +DGRSS RSR   SLPHTS QDQVVPQME+RAVEDEDERDHPMS
Sbjct: 87  SPQKDRKNHATSGAATIDGRSSSRSRTRSSLPHTSNQDQVVPQMEKRAVEDEDERDHPMS 146

Query: 121 PVN 122
           P+N
Sbjct: 147 PIN 149

The following BLAST results are available for this feature:

BLAST of Carg15141-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014778.1	3.2e-59	100.00	hypothetical protein SDJN02_22407 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022923140.1	9.2e-59	99.17	uncharacterized protein LOC111430892 isoform X2 [Cucurbita moschata]	[more]
XP_022984701.1	2.7e-58	98.35	uncharacterized protein LOC111482903 isoform X2 [Cucurbita maxima]	[more]
KAG6576732.1	1.7e-57	98.36	hypothetical protein SDJN03_24306, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022923139.1	2.3e-57	98.36	uncharacterized protein LOC111430892 isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg15141-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg15141-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EAV1	4.5e-59	99.17	uncharacterized protein LOC111430892 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J606	1.3e-58	98.35	uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1E5I2	1.1e-57	98.36	uncharacterized protein LOC111430892 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JBA6	3.2e-57	97.54	uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1CHV7	1.0e-42	79.67	uncharacterized protein LOC111011640 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]

BLAST of Carg15141-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..83
None	No IPR available	PANTHER	PTHR33676:SF15	SUBFAMILY NOT NAMED	coord: 1..115
IPR044678	Cold-regulated protein 27/28	PANTHER	PTHR33676	COLD REGULATED PROTEIN 27	coord: 1..115

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg15141	Carg15141	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg15141-RA:1	Carg15141-RA:1	exon
Carg15141-RA:2	Carg15141-RA:2	exon
Carg15141-RA:3	Carg15141-RA:3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg15141-RA:five_prime_utr	Carg15141-RA:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg15141-RA:cds	Carg15141-RA:cds	CDS
Carg15141-RA:cds	Carg15141-RA:cds_2	CDS
Carg15141-RA:cds	Carg15141-RA:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg15141-RA	Carg15141-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042752	regulation of circadian rhythm
biological_process	GO:0009409	response to cold