Carg15132-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg15132-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Pectin acetylesterase
Location	Carg_Chr16: 670368 .. 670672 (+)
Sequence length	219
RNA-Seq Expression	Carg15132-RA
Synteny	Carg15132-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCTGGCCGCCGTCGAAGCTCCATTACTAGTTCTTTTACTTCTTGCTGCAGCGCTGCGGTGGCCGCTCGCCGGAGCGCGGCTCCTAGTGGAGATGACGGTGGTCCAAAGCGCCTCTTCCATCGGCGCCTGTAAGTGAAAAAGATTCGTTTCCTTTTCTTTCCGTCTCTAATTTGGCATTTGATCGGATTTTGTTTTTGTATTTGGATTAGTCTGTTTAGACGGAAGCTTGCCGGCGTATCACCTGGACAGAGGATTCGGCGCCGGCGCGGGAAACTGGCTTCTACAGTTCGAGGTGAATAA

mRNA sequence

ATGAATCTGGCCGCCGTCGAAGCTCCATTACTAGTTCTTTTACTTCTTGCTGCAGCGCTGCGGTGGCCGCTCGCCGGAGCGCGGCTCCTAGTGGAGATGACGGTGGTCCAAAGCGCCTCTTCCATCGGCGCCTGTAAACGGAAGCTTGCCGGCGTATCACCTGGACAGAGGATTCGGCGCCGGCGCGGGAAACTGGCTTCTACAGTTCGAGGTGAATAA

Coding sequence (CDS)

ATGAATCTGGCCGCCGTCGAAGCTCCATTACTAGTTCTTTTACTTCTTGCTGCAGCGCTGCGGTGGCCGCTCGCCGGAGCGCGGCTCCTAGTGGAGATGACGGTGGTCCAAAGCGCCTCTTCCATCGGCGCCTGTAAACGGAAGCTTGCCGGCGTATCACCTGGACAGAGGATTCGGCGCCGGCGCGGGAAACTGGCTTCTACAGTTCGAGGTGAATAA

Protein sequence

MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQSASSIGACKRKLAGVSPGQRIRRRRGKLASTVRGE

Homology

[Close]

BLAST of Carg15132-RA vs. NCBI nr
Match: KAG7014769.1 (hypothetical protein SDJN02_22398, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.1 bits (318), Expect = 6.1e-26
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQSASSIGACKRKLAGVSPGQRIRR 60
          MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQSASSIGACKRKLAGVSPGQRIRR
Sbjct: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQSASSIGACKRKLAGVSPGQRIRR 60

Query: 61 RRGKLASTVRGE 73
          RRGKLASTVRGE
Sbjct: 61 RRGKLASTVRGE 72

[Close]

BLAST of Carg15132-RA vs. NCBI nr
Match: XP_022922469.1 (pectin acetylesterase 9 [Cucurbita moschata] >KAG6576722.1 Pectin acetylesterase 9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.7 bits (182), Expect = 3.6e-10
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQSASSIGA 45
          MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQ+ASSIGA
Sbjct: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQNASSIGA 44

[Close]

BLAST of Carg15132-RA vs. NCBI nr
Match: XP_022985445.1 (pectin acetylesterase 9 [Cucurbita maxima])

HSP 1 Score: 74.7 bits (182), Expect = 3.6e-10
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQSASSIGA 45
          MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQ+ASSIGA
Sbjct: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQNASSIGA 44

[Close]

BLAST of Carg15132-RA vs. NCBI nr
Match: XP_023552008.1 (pectin acetylesterase 9 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 74.7 bits (182), Expect = 3.6e-10
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQSASSIGA 45
          MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQ+ASSIGA
Sbjct: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQNASSIGA 44

[Close]

BLAST of Carg15132-RA vs. NCBI nr
Match: XP_038876641.1 (pectin acetylesterase 9 isoform X2 [Benincasa hispida])

HSP 1 Score: 58.9 bits (141), Expect = 2.1e-05
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQSASSIGA 45
          M+  AVEAPLL L+LLAAALR PLAGARLLVEMTVV++ASSIGA
Sbjct: 1  MSPPAVEAPLLFLILLAAALRCPLAGARLLVEMTVVRNASSIGA 44

[Close]

BLAST of Carg15132-RA vs. ExPASy TrEMBL
Match: A0A6J1JBC0 (Pectin acetylesterase OS=Cucurbita maxima OX=3661 GN=LOC111483453 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-10
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQSASSIGA 45
          MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQ+ASSIGA
Sbjct: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQNASSIGA 44

[Close]

BLAST of Carg15132-RA vs. ExPASy TrEMBL
Match: A0A6J1E3G7 (Pectin acetylesterase OS=Cucurbita moschata OX=3662 GN=LOC111430471 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-10
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQSASSIGA 45
          MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQ+ASSIGA
Sbjct: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQNASSIGA 44

[Close]

BLAST of Carg15132-RA vs. ExPASy TrEMBL
Match: A0A1S3AYA0 (Pectin acetylesterase OS=Cucumis melo OX=3656 GN=LOC103484085 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-04
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQSASSIGA 45
          M+  AVEAPLL+L LLAAAL  PL GARLLVEMTVV++ASSIGA
Sbjct: 1  MSPTAVEAPLLLLFLLAAALLCPLGGARLLVEMTVVRNASSIGA 44

[Close]

BLAST of Carg15132-RA vs. ExPASy TrEMBL
Match: A0A5A7SR39 (Pectin acetylesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00650 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-04
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQSASSIGA 45
          M+  AVEAPLL+L LLAAAL  PL GARLLVEMTVV++ASSIGA
Sbjct: 1  MSPTAVEAPLLLLFLLAAALLCPLGGARLLVEMTVVRNASSIGA 44

[Close]

BLAST of Carg15132-RA vs. ExPASy TrEMBL
Match: A0A0A0L8Q6 (Pectin acetylesterase OS=Cucumis sativus OX=3659 GN=Csa_3G182200 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-04
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQSASSIGA 45
          M+  AVEAPLL+L LLAAAL  PL GARLLVEMTVV++ASSIGA
Sbjct: 1  MSPTAVEAPLLLLFLLAAALLCPLGGARLLVEMTVVRNASSIGA 44

The following BLAST results are available for this feature:

BLAST of Carg15132-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014769.1	6.1e-26	100.00	hypothetical protein SDJN02_22398, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022922469.1	3.6e-10	97.73	pectin acetylesterase 9 [Cucurbita moschata] >KAG6576722.1 Pectin acetylesterase...	[more]
XP_022985445.1	3.6e-10	97.73	pectin acetylesterase 9 [Cucurbita maxima]	[more]
XP_023552008.1	3.6e-10	97.73	pectin acetylesterase 9 [Cucurbita pepo subsp. pepo]	[more]
XP_038876641.1	2.1e-05	81.82	pectin acetylesterase 9 isoform X2 [Benincasa hispida]	[more]

BLAST of Carg15132-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg15132-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JBC0	1.7e-10	97.73	Pectin acetylesterase OS=Cucurbita maxima OX=3661 GN=LOC111483453 PE=3 SV=1	[more]
A0A6J1E3G7	1.7e-10	97.73	Pectin acetylesterase OS=Cucurbita moschata OX=3662 GN=LOC111430471 PE=3 SV=1	[more]
A0A1S3AYA0	1.4e-04	77.27	Pectin acetylesterase OS=Cucumis melo OX=3656 GN=LOC103484085 PE=3 SV=1	[more]
A0A5A7SR39	1.4e-04	77.27	Pectin acetylesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]
A0A0A0L8Q6	1.4e-04	77.27	Pectin acetylesterase OS=Cucumis sativus OX=3659 GN=Csa_3G182200 PE=3 SV=1	[more]

BLAST of Carg15132-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..72

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg15132	Carg15132	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg15132-RA:1	Carg15132-RA:1	exon
Carg15132-RA:2	Carg15132-RA:2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg15132-RA:cds	Carg15132-RA:cds	CDS
Carg15132-RA:cds	Carg15132-RA:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg15132-RA	Carg15132-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071555	cell wall organization
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0052793	pectin acetylesterase activity