Carg15124-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg15124-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr16: 630558 .. 632264 (+)
Sequence length261
RNA-Seq ExpressionCarg15124-RA
SyntenyCarg15124-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGGTTGATGTAACGTTTCGCCTCTGATAATTTGTGATTTCGGATTCTAGGGTTTCGATTCCTCTAATTTCTCTTCAGTTTGAATTACTGTGGAAGTCTACCTCACTAGGATTTGGGCGAGTAGAGTGGGATTCTACTGGAACTTGCAGTTTCCGACATCTAAGGTAACACTTCTTCATTTCTTTCTTTTAATCTAATTTTAGTAAATTATTGATTATCCGGTTTTAGTTTCTTTAGTCACTGTGCTAGTTTATCTGTATTAGATTCATGGTAGATCTGTATCGTAGAGTATAGTTTCGAGCGCGATGGACGTGTAGCTCGTTGTTTGATTTCCTAATAAGCTTGGGAAAGAAAAGGAGGAAATTAAATTTGGAAGTGTGGTTGGCGACGACAGAGCTTAATGGTTCAGTTCATTTTGTTGCAGTGGGAATTTCGGTTTATATCAAATGACACAAGCGATTAGAGGTTGGATTTGGATTTGGATTTGGATTTTTTTTTTTTTTTCCATTTCATCTAGTCAATTTTTTTCCCACCTTTCCTTAATAAGAAGTTCTTCGGAGTGGAAGGCAGCTAGAATCATTCGATTTTATGTTGGGTATGTTGGCTGTCTAATCGTTTTTACTTGTTCGGCGGTGTAATTAATGGTCTCAAGCTCTCATTAAGCATTAGTTTTCCCTTATTGCGAGGATTAAAAGTTGCTTACCAACTTTGATTCTTTATTTTTATTATTCTGTTTTGTTTTTTTCCTTCTCATGTCCATCAATGAGACTTTTCTTTTAATACAGATCAAGGACTATATTTTATATCAATAAAAGTAATTACGTGAGAAACTGGACAAAGTTTTATAACCCCATTGAAGAAGTAGATTTGGGGATTATGAAAAAATCTCAAATTTATCAATGTTAAGATAATAGAAATTTGACTGTCTCCAATTAAGAAGTAGATTTGGGGATTATTAAAGAGAGTCAAATAGTGCTTGAAAAATCTTTAAACTATTTTCCTAATTCAAAGATTCAAAGGTATTTTGTGATTGTGGACCCATATCAGCCACGAAAGGCACTATTTGTCCAATCGTCTCATCTGTACCTTTCAAATTTGAACCTCAGATTCCAACTGTAAGATTGTGATTGTCGGTAGTGATTCGTATGCATTGGAAGACTTCAAAAGCTTTAGAGAAACTTACCCAGTTTTTGCAGTATTGCTGCTGAAGAATATAAAGGTAATGGATCCAGAGTTTGCTTGGAACATGTTTGTTGTATCCGAGGTCGTGAAATCCTGAATTTCCTGCATGCACAAGCTCACTTTTCGTTCAGGCTATCTAGACATTTTTTAGAACATATATATATTATTTAAATTCTAACTGGATCAGTTTTCAATTTTTATAATAATAAATAGAATGCTGTTTCTCTAACAGATACATCATCTTCTTGGTATCTTAAGCATTCAAATTTCCACTTCCTTTTCATGCAGGATATTGTTACAAGTTCCTGATTGTTGGGCTTTCTCAAATCTTAGCTGAAGTGGTAGTTTGGGTCCTCAGTCACAGCTTTACCAGCGTGTCTATGGTATGAAGGGTATCATTTACTTGTCGGATGCCTTGGAAGTGTAACATCTGCTTAATCATCCGTTTTCACGAAATATTTTCTCCTGCAGAGTGAGTTCAATTTAGAGTCGCTTCTTTGCTTCATCCACATAATTTAG

mRNA sequence

ATGGAGAAGTTTGAATTACTGTGGAAGTCTACCTCACTAGGATTTGGGCGAGTAGAGTGGGATTCTACTGGAACTTGCAGTTTCCGACATCTAAGTATTGCTGCTGAAGAATATAAAGGATATTGTTACAAGTTCCTGATTGTTGGGCTTTCTCAAATCTTAGCTGAAGTGGTAGTTTGGGTCCTCAGTCACAGCTTTACCAGCGTGTCTATGAGTGAGTTCAATTTAGAGTCGCTTCTTTGCTTCATCCACATAATTTAG

Coding sequence (CDS)

ATGGAGAAGTTTGAATTACTGTGGAAGTCTACCTCACTAGGATTTGGGCGAGTAGAGTGGGATTCTACTGGAACTTGCAGTTTCCGACATCTAAGTATTGCTGCTGAAGAATATAAAGGATATTGTTACAAGTTCCTGATTGTTGGGCTTTCTCAAATCTTAGCTGAAGTGGTAGTTTGGGTCCTCAGTCACAGCTTTACCAGCGTGTCTATGAGTGAGTTCAATTTAGAGTCGCTTCTTTGCTTCATCCACATAATTTAG

Protein sequence

MEKFELLWKSTSLGFGRVEWDSTGTCSFRHLSIAAEEYKGYCYKFLIVGLSQILAEVVVWVLSHSFTSVSMSEFNLESLLCFIHII
Homology
[Close]
BLAST of Carg15124-RA vs. NCBI nr
Match: KAG7014761.1 (hypothetical protein SDJN02_22390, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 175.6 bits (444), Expect = 1.8e-40
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MEKFELLWKSTSLGFGRVEWDSTGTCSFRHLSIAAEEYKGYCYKFLIVGLSQILAEVVVW 60
          MEKFELLWKSTSLGFGRVEWDSTGTCSFRHLSIAAEEYKGYCYKFLIVGLSQILAEVVVW
Sbjct: 1  MEKFELLWKSTSLGFGRVEWDSTGTCSFRHLSIAAEEYKGYCYKFLIVGLSQILAEVVVW 60

Query: 61 VLSHSFTSVSMSEFNLESLLCFIHII 87
          VLSHSFTSVSMSEFNLESLLCFIHII
Sbjct: 61 VLSHSFTSVSMSEFNLESLLCFIHII 86

[Close]
BLAST of Carg15124-RA vs. NCBI nr
Match: KAG6576715.1 (Silicon efflux transporter LSI2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-07
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 3   KFELLWKSTSLGFGRVEWDSTGTCSFRHL 32
           +FELLWKSTSLGFGRVEWDSTGTCSFRHL
Sbjct: 566 QFELLWKSTSLGFGRVEWDSTGTCSFRHL 594

The following BLAST results are available for this feature:
BLAST of Carg15124-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014761.11.8e-40100.00hypothetical protein SDJN02_22390, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6576715.12.0e-0796.55Silicon efflux transporter LSI2, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Carg15124-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15124-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15124-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg15124Carg15124gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg15124-RA:1Carg15124-RA:1exon
Carg15124-RA:2Carg15124-RA:2exon
Carg15124-RA:3Carg15124-RA:3exon
Carg15124-RA:4Carg15124-RA:4exon
Carg15124-RA:5Carg15124-RA:5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg15124-RA:cdsCarg15124-RA:cdsCDS
Carg15124-RA:cdsCarg15124-RA:cds_2CDS
Carg15124-RA:cdsCarg15124-RA:cds_3CDS
Carg15124-RA:cdsCarg15124-RA:cds_4CDS
Carg15124-RA:cdsCarg15124-RA:cds_5CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg15124-RACarg15124-RA-proteinpolypeptide