Carg15004-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg15004-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionVQ motif-containing protein 10-like
LocationCarg_Chr07: 582840 .. 583163 (+)
Sequence length324
RNA-Seq ExpressionCarg15004-RA
SyntenyCarg15004-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAACTCCAAGGCGGCGGGTCCAGTGAAGGTGGTGTTTATTGAGTACCACCATATTCAGACCGACGTCACAAATTTCAAGTCCGTCGTTCAGACCCTCACCGGCATGAATTCCACCGCCGGTGGAAACACCAGGAAGAAGCGGCGAGTGGATGAGAATATTATTGATGCAAGATCAGCCCGGTTTGAAGAAAGTACTGAAAGTTGTGAGACCGATACGACGTCGTCTCTGCAGAGCACGTCGTATGAGGACTTGGATCCCTTGCTGCTCAAGCTCGAGCTTCCTTCCATGGAGGATCTCAACTGGATTTGGGCTGATTAA

mRNA sequence

ATGGCAAACTCCAAGGCGGCGGGTCCAGTGAAGGTGGTGTTTATTGAGTACCACCATATTCAGACCGACGTCACAAATTTCAAGTCCGTCGTTCAGACCCTCACCGGCATGAATTCCACCGCCGGTGGAAACACCAGGAAGAAGCGGCGAGTGGATGAGAATATTATTGATGCAAGATCAGCCCGGTTTGAAGAAAGTACTGAAAGTTGTGAGACCGATACGACGTCGTCTCTGCAGAGCACGTCGTATGAGGACTTGGATCCCTTGCTGCTCAAGCTCGAGCTTCCTTCCATGGAGGATCTCAACTGGATTTGGGCTGATTAA

Coding sequence (CDS)

ATGGCAAACTCCAAGGCGGCGGGTCCAGTGAAGGTGGTGTTTATTGAGTACCACCATATTCAGACCGACGTCACAAATTTCAAGTCCGTCGTTCAGACCCTCACCGGCATGAATTCCACCGCCGGTGGAAACACCAGGAAGAAGCGGCGAGTGGATGAGAATATTATTGATGCAAGATCAGCCCGGTTTGAAGAAAGTACTGAAAGTTGTGAGACCGATACGACGTCGTCTCTGCAGAGCACGTCGTATGAGGACTTGGATCCCTTGCTGCTCAAGCTCGAGCTTCCTTCCATGGAGGATCTCAACTGGATTTGGGCTGATTAA

Protein sequence

MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTAGGNTRKKRRVDENIIDARSARFEESTESCETDTTSSLQSTSYEDLDPLLLKLELPSMEDLNWIWAD
Homology
BLAST of Carg15004-RA vs. NCBI nr
Match: KAG7026461.1 (hypothetical protein SDJN02_10461, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 210.3 bits (534), Expect = 8.2e-51
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTAGGNTRKKRRVDENIIDARS 60
           MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTAGGNTRKKRRVDENIIDARS
Sbjct: 1   MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTAGGNTRKKRRVDENIIDARS 60

Query: 61  ARFEESTESCETDTTSSLQSTSYEDLDPLLLKLELPSMEDLNWIWAD 108
           ARFEESTESCETDTTSSLQSTSYEDLDPLLLKLELPSMEDLNWIWAD
Sbjct: 61  ARFEESTESCETDTTSSLQSTSYEDLDPLLLKLELPSMEDLNWIWAD 107

BLAST of Carg15004-RA vs. NCBI nr
Match: XP_022926399.1 (VQ motif-containing protein 10-like [Cucurbita moschata] >KAG6594463.1 VQ motif-containing protein 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 208.8 bits (530), Expect = 2.4e-50
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTAGGNTRKKRRVDENIIDARS 60
           MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTAGGNTRKKRRVDENIIDARS
Sbjct: 1   MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTAGGNTRKKRRVDENIIDARS 60

Query: 61  ARFEESTESCETDTTSSLQSTSYEDLDPLLLKLELPSMEDLNWIWAD 108
           ARFEESTESCETDTTSSLQSTS+EDLDPLLLKLELPSMEDLNWIWAD
Sbjct: 61  ARFEESTESCETDTTSSLQSTSFEDLDPLLLKLELPSMEDLNWIWAD 107

BLAST of Carg15004-RA vs. NCBI nr
Match: XP_023003955.1 (VQ motif-containing protein 10 [Cucurbita maxima])

HSP 1 Score: 199.1 bits (505), Expect = 1.9e-47
Identity = 101/107 (94.39%), Postives = 104/107 (97.20%), Query Frame = 0

Query: 1   MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTAGGNTRKKRRVDENIIDARS 60
           MANSKAAGPVKVVFIEYHHIQTDV+NFKSVVQTLTGMNSTAGGNTRKK RVDENIID RS
Sbjct: 1   MANSKAAGPVKVVFIEYHHIQTDVSNFKSVVQTLTGMNSTAGGNTRKKPRVDENIIDVRS 60

Query: 61  ARFEESTESCETDTTSSLQSTSYEDLDPLLLKLELPSMEDLNWIWAD 108
           ARFEEST SCETDTTSS+QSTS+EDLDPLLLKLELPSMEDLNWIWAD
Sbjct: 61  ARFEESTVSCETDTTSSVQSTSFEDLDPLLLKLELPSMEDLNWIWAD 107

BLAST of Carg15004-RA vs. NCBI nr
Match: XP_023518171.1 (VQ motif-containing protein 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.7 bits (504), Expect = 2.5e-47
Identity = 101/107 (94.39%), Postives = 103/107 (96.26%), Query Frame = 0

Query: 1   MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTAGGNTRKKRRVDENIIDARS 60
           MANSKAAGPVKVVFIEYHHIQTDV+NFKSVVQTLTGMNS AGGNTRKKRRVDENIID RS
Sbjct: 1   MANSKAAGPVKVVFIEYHHIQTDVSNFKSVVQTLTGMNSPAGGNTRKKRRVDENIIDVRS 60

Query: 61  ARFEESTESCETDTTSSLQSTSYEDLDPLLLKLELPSMEDLNWIWAD 108
            RFEESTESCETDTTSS QSTS+EDLDPLLLKLELPSMEDLNWIWAD
Sbjct: 61  DRFEESTESCETDTTSSQQSTSFEDLDPLLLKLELPSMEDLNWIWAD 107

BLAST of Carg15004-RA vs. NCBI nr
Match: KAG7034723.1 (hypothetical protein SDJN02_04453, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.0 bits (227), Expect = 3.2e-15
Identity = 60/113 (53.10%), Postives = 72/113 (63.72%), Query Frame = 0

Query: 1   MANSK--AAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTA----GGNTRKKRRVDEN 60
           MA+SK   AG VKVV IEYHH+ TDV++FKSVVQTLTG +S+A    GG  RK+ RV   
Sbjct: 1   MADSKNTPAGGVKVVLIEYHHVHTDVSSFKSVVQTLTGKHSSAVEGGGGTCRKRPRV--- 60

Query: 61  IIDARSARFEESTESCETDTTSSLQSTSYEDLDPLLLKLELPSMEDLNWIWAD 108
                     E  +S    T S L STS++DLD   L L LP++EDLNWIWAD
Sbjct: 61  ----------EVEKSYMNRTASFLHSTSFKDLD-RFLNLHLPALEDLNWIWAD 99

BLAST of Carg15004-RA vs. ExPASy TrEMBL
Match: A0A6J1EF02 (VQ motif-containing protein 10-like OS=Cucurbita moschata OX=3662 GN=LOC111433561 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.2e-50
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTAGGNTRKKRRVDENIIDARS 60
           MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTAGGNTRKKRRVDENIIDARS
Sbjct: 1   MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTAGGNTRKKRRVDENIIDARS 60

Query: 61  ARFEESTESCETDTTSSLQSTSYEDLDPLLLKLELPSMEDLNWIWAD 108
           ARFEESTESCETDTTSSLQSTS+EDLDPLLLKLELPSMEDLNWIWAD
Sbjct: 61  ARFEESTESCETDTTSSLQSTSFEDLDPLLLKLELPSMEDLNWIWAD 107

BLAST of Carg15004-RA vs. ExPASy TrEMBL
Match: A0A6J1KT83 (VQ motif-containing protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111497400 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 9.1e-48
Identity = 101/107 (94.39%), Postives = 104/107 (97.20%), Query Frame = 0

Query: 1   MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTAGGNTRKKRRVDENIIDARS 60
           MANSKAAGPVKVVFIEYHHIQTDV+NFKSVVQTLTGMNSTAGGNTRKK RVDENIID RS
Sbjct: 1   MANSKAAGPVKVVFIEYHHIQTDVSNFKSVVQTLTGMNSTAGGNTRKKPRVDENIIDVRS 60

Query: 61  ARFEESTESCETDTTSSLQSTSYEDLDPLLLKLELPSMEDLNWIWAD 108
           ARFEEST SCETDTTSS+QSTS+EDLDPLLLKLELPSMEDLNWIWAD
Sbjct: 61  ARFEESTVSCETDTTSSVQSTSFEDLDPLLLKLELPSMEDLNWIWAD 107

BLAST of Carg15004-RA vs. ExPASy TrEMBL
Match: A0A6J1CYB0 (uncharacterized protein LOC111015700 OS=Momordica charantia OX=3673 GN=LOC111015700 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.3e-13
Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 0

Query: 7   AGPVKVVFIEYHHIQTDVTNFKSVVQTLTGM----------NSTAGGNTRKKRRVDENII 66
           + PVKVV IEYHH+QTDV+NFKSVVQ+LTG            S   G+T K+RR D   +
Sbjct: 4   SAPVKVVLIEYHHVQTDVSNFKSVVQSLTGNAKRSSSALPDTSFPAGDTTKRRRRD---L 63

Query: 67  DARSARFEESTESCETDTTSSLQSTSYEDLDPLLLKLELPSMEDLNWIWAD 108
           D+ +A  +   ++  T T   L + S++DLD  LLK  LPS++DL+WIWAD
Sbjct: 64  DSAAAN-QTIIQTTATTTPFDLHTMSFKDLD-RLLKFNLPSVQDLDWIWAD 109

BLAST of Carg15004-RA vs. ExPASy TrEMBL
Match: A0A0A0KNW8 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G523420 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.1e-12
Identity = 53/111 (47.75%), Postives = 67/111 (60.36%), Query Frame = 0

Query: 1   MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTA----GGNTRKKRRVDENII 60
           M NSK    V+VV IEYHHIQTD +NFKSVVQ+LTG +S A    GG   +KR+     +
Sbjct: 21  MGNSKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHSPAAEDDGGEICRKRQ----RV 80

Query: 61  DARSARFEESTESCETDTTSSLQSTSYEDLDPLLLKLELPSMEDLNWIWAD 108
            +++   E  T          + + S++DLD  LL LELPSMEDLNWI  D
Sbjct: 81  VSQNNNHESITNI--NQRVKMIHTKSFKDLD-RLLALELPSMEDLNWILTD 124

BLAST of Carg15004-RA vs. ExPASy TrEMBL
Match: A0A5D3CN21 (VQ motif-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009060 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.2e-11
Identity = 51/111 (45.95%), Postives = 65/111 (58.56%), Query Frame = 0

Query: 1   MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNST----AGGNTRKKRRVDENII 60
           M N K    V+VV IEYHHIQTD +NFKSVVQ+LTG +S+     G   RK++RV     
Sbjct: 1   MGNPKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHSSTAEDGGEICRKRQRV----- 60

Query: 61  DARSARFEESTESCETDTTSSLQSTSYEDLDPLLLKLELPSMEDLNWIWAD 108
               AR    +      +   + + S++DLD  LL LELPSMEDL+WI  D
Sbjct: 61  ---VARNNNESIININQSVKMIHTASFKDLD-RLLSLELPSMEDLDWILTD 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7026461.18.2e-51100.00hypothetical protein SDJN02_10461, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022926399.12.4e-5099.07VQ motif-containing protein 10-like [Cucurbita moschata] >KAG6594463.1 VQ motif-... [more]
XP_023003955.11.9e-4794.39VQ motif-containing protein 10 [Cucurbita maxima][more]
XP_023518171.12.5e-4794.39VQ motif-containing protein 10-like [Cucurbita pepo subsp. pepo][more]
KAG7034723.13.2e-1553.10hypothetical protein SDJN02_04453, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EF021.2e-5099.07VQ motif-containing protein 10-like OS=Cucurbita moschata OX=3662 GN=LOC11143356... [more]
A0A6J1KT839.1e-4894.39VQ motif-containing protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111497400 PE=4 ... [more]
A0A6J1CYB03.3e-1347.75uncharacterized protein LOC111015700 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A0A0KNW88.1e-1247.75VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G523420 PE=4 SV=... [more]
A0A5D3CN215.2e-1145.95VQ motif-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 20..40
e-value: 2.5E-7
score: 30.1
IPR039608VQ motif-containing protein 1/10PANTHERPTHR34777VQ MOTIF-CONTAINING PROTEIN 10coord: 4..107
NoneNo IPR availablePANTHERPTHR34777:SF1VQ MOTIF-CONTAINING PROTEIN 10coord: 4..107

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg15004Carg15004gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg15004-RA:1Carg15004-RA:1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg15004-RA:cdsCarg15004-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg15004-RACarg15004-RA-proteinpolypeptide