Carg15004-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAAACTCCAAGGCGGCGGGTCCAGTGAAGGTGGTGTTTATTGAGTACCACCATATTCAGACCGACGTCACAAATTTCAAGTCCGTCGTTCAGACCCTCACCGGCATGAATTCCACCGCCGGTGGAAACACCAGGAAGAAGCGGCGAGTGGATGAGAATATTATTGATGCAAGATCAGCCCGGTTTGAAGAAAGTACTGAAAGTTGTGAGACCGATACGACGTCGTCTCTGCAGAGCACGTCGTATGAGGACTTGGATCCCTTGCTGCTCAAGCTCGAGCTTCCTTCCATGGAGGATCTCAACTGGATTTGGGCTGATTAA ATGGCAAACTCCAAGGCGGCGGGTCCAGTGAAGGTGGTGTTTATTGAGTACCACCATATTCAGACCGACGTCACAAATTTCAAGTCCGTCGTTCAGACCCTCACCGGCATGAATTCCACCGCCGGTGGAAACACCAGGAAGAAGCGGCGAGTGGATGAGAATATTATTGATGCAAGATCAGCCCGGTTTGAAGAAAGTACTGAAAGTTGTGAGACCGATACGACGTCGTCTCTGCAGAGCACGTCGTATGAGGACTTGGATCCCTTGCTGCTCAAGCTCGAGCTTCCTTCCATGGAGGATCTCAACTGGATTTGGGCTGATTAA ATGGCAAACTCCAAGGCGGCGGGTCCAGTGAAGGTGGTGTTTATTGAGTACCACCATATTCAGACCGACGTCACAAATTTCAAGTCCGTCGTTCAGACCCTCACCGGCATGAATTCCACCGCCGGTGGAAACACCAGGAAGAAGCGGCGAGTGGATGAGAATATTATTGATGCAAGATCAGCCCGGTTTGAAGAAAGTACTGAAAGTTGTGAGACCGATACGACGTCGTCTCTGCAGAGCACGTCGTATGAGGACTTGGATCCCTTGCTGCTCAAGCTCGAGCTTCCTTCCATGGAGGATCTCAACTGGATTTGGGCTGATTAA MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTAGGNTRKKRRVDENIIDARSARFEESTESCETDTTSSLQSTSYEDLDPLLLKLELPSMEDLNWIWAD Homology
BLAST of Carg15004-RA vs. NCBI nr
Match: KAG7026461.1 (hypothetical protein SDJN02_10461, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 210.3 bits (534), Expect = 8.2e-51 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of Carg15004-RA vs. NCBI nr
Match: XP_022926399.1 (VQ motif-containing protein 10-like [Cucurbita moschata] >KAG6594463.1 VQ motif-containing protein 10, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 208.8 bits (530), Expect = 2.4e-50 Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of Carg15004-RA vs. NCBI nr
Match: XP_023003955.1 (VQ motif-containing protein 10 [Cucurbita maxima]) HSP 1 Score: 199.1 bits (505), Expect = 1.9e-47 Identity = 101/107 (94.39%), Postives = 104/107 (97.20%), Query Frame = 0
BLAST of Carg15004-RA vs. NCBI nr
Match: XP_023518171.1 (VQ motif-containing protein 10-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 198.7 bits (504), Expect = 2.5e-47 Identity = 101/107 (94.39%), Postives = 103/107 (96.26%), Query Frame = 0
BLAST of Carg15004-RA vs. NCBI nr
Match: KAG7034723.1 (hypothetical protein SDJN02_04453, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 92.0 bits (227), Expect = 3.2e-15 Identity = 60/113 (53.10%), Postives = 72/113 (63.72%), Query Frame = 0
BLAST of Carg15004-RA vs. ExPASy TrEMBL
Match: A0A6J1EF02 (VQ motif-containing protein 10-like OS=Cucurbita moschata OX=3662 GN=LOC111433561 PE=4 SV=1) HSP 1 Score: 208.8 bits (530), Expect = 1.2e-50 Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of Carg15004-RA vs. ExPASy TrEMBL
Match: A0A6J1KT83 (VQ motif-containing protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111497400 PE=4 SV=1) HSP 1 Score: 199.1 bits (505), Expect = 9.1e-48 Identity = 101/107 (94.39%), Postives = 104/107 (97.20%), Query Frame = 0
BLAST of Carg15004-RA vs. ExPASy TrEMBL
Match: A0A6J1CYB0 (uncharacterized protein LOC111015700 OS=Momordica charantia OX=3673 GN=LOC111015700 PE=4 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 3.3e-13 Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 0
BLAST of Carg15004-RA vs. ExPASy TrEMBL
Match: A0A0A0KNW8 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G523420 PE=4 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 8.1e-12 Identity = 53/111 (47.75%), Postives = 67/111 (60.36%), Query Frame = 0
BLAST of Carg15004-RA vs. ExPASy TrEMBL
Match: A0A5D3CN21 (VQ motif-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009060 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 5.2e-11 Identity = 51/111 (45.95%), Postives = 65/111 (58.56%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
|