Carg14779-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg14779-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	serine/arginine-rich splicing factor SR45
Location	Carg_Chr01: 10382472 .. 10388503 (+)
Sequence length	1874
RNA-Seq Expression	Carg14779-RA
Synteny	Carg14779-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGTTTTCTCTCTCTCATGTTTTCGTCATTTACGTGTCGACCATTTTTTTGTGTTGCTTCTCCTTTCACTATCTCTAATCTCGAACGATACCAGACGGGTTTAAGCTAGGGTTCCAATTCTTGCAGCTCTTGCTGGCCATGGCGAAACCAAGCAGAGGCCGTCGCTCGCCTCCGTCGAGATCGGGATCCTCTTCACGTTCCCGCTCATACTCCGGCTCTGATTCCCGCTCCAGTTCCCGCTCACGCTCCAGGTCACGGTCTGTATCTGTGTCCCATTCCAGGTCCATTTCCTCGTCTTCGTCTCCCTCCCGCAGTGCTAGTTCTCGGAGCCGAAGTCCCCCTCCTCAGAGAAAGAGGTTCGTCTTTCTTTCGCTTGAACTAGCATTTTTCATTTTTGGCTCCTGCATTTGGTGCTTATTGTTTGTTAGTGTGAGAGGAAGTATCAGAATTAGGCATTTTATGATTCCTGAAATCATTAGCATCGTACGTCGAAATCACATTTTCGTTTTTTTTTCTTCCAGTTCTACTGAAACAGCTCGGAGGACTCGCGCTTCACCTCCACCGGCTAAACGAAGTTCTCCACCACCCAGGCAATAACATCTCCATCTACAGTCAAATCCAACTTCATTATTTGTTCATGGCATGAATTTTCCGATAAGTCGATCATTTTTGCTTTGGCGCGGTTTTTGATGCGCCGGCCTTTTGGTACAGAGATAAATCTTAGGAAATACAATGGTGTAATTATTTTAATTCAGTATTTCTTCAGAACTGTTGTGTAGCTATTGCATTGTTTACAACTTTTAATCAATAAACAATACTCTATTTCCATTAATTATCTTGCAATTGTAAATTTTATCTTTAGTTATCTATGATGACTTACAATTTTTATGTAATTGACCATTTCGAAATTGTCATATGCATTTTGTTTATATTAATATTTCCCCTAGTCATGTATTTTGTTTATATAAATATTTCCTTCAGTCACGCATTTGTAAATCAACGATTTACATCCACTGTTTTCTTTTGGTGATATTTTCCTTGTCTGTCAGTCATCTATATATCTATTTTGTTTTTCAAACTGTTTCTATTGATTTCAGGAAACCATCACCTGTACGCGAGTCACTTGTTCTTCACATTGATGCACTGAGTAGGAATGTCCATGAGGGTCATTTAAGAGAAATCTTCAGTATGTTTTTTCACTCGCCTTTTTTAGCTTCTAACAATTATCCTGATGGATTAATGCACTTTTGTTTTCATATCATTCTTTGTTAAACGTTAATAGTAGAGCAAAGAGTATAGATGGGAGCTGTCTTGTGATGAGGTTTGGGAGGTGGTGAGGTTCAATGCCTCCTCGTGAGCATCAGTCACTAGGTCTTTTTGTAGTTTTGTGGGACTGTCTTGTTGGGTTTGTTTTTTTTTGAATGCCTTTGTTTATTCTTTCATTTTTCTCCATGATAGTTTGATCTCTTAAAAAAGATTAAAGATTTAAACAAAAAAAACTTTATTTCATGCTTCAGTACATCATCTTAAGGTTACACTTTGACTTGATGAATGTAGCATTTTGTCTTAAAAATTAAACTTGGTATGTTCTTGAACATATGTCTTTATGTAGTAGATTCAATTCAACGTAGTTTGTTGGAATGATCATTGACCATGTTGTTTTGTCCTTAACAATTGAGCAATTTGTCATATCGATTACTCTTCATCATATCTGTTTTGTTAAGTTACTGTATGCGCAGTCCTTCCTTTCCTCTCCTTTTCTCATGAATATGTTGCATAACTAGTTGTAAATTTGTTACTCATTCAATCAAAAAGGTCACTCTCATATATGAATTTTTCTCCAAAATATCTTTATGGTTAAGATTCATGATTAATGGATTGGATAGGTAATCTGTTACCTTTTTTTTTTTTTTTTTTTTTTTTATAATTATTTTAACTACTTTTGTAGCTCTGATGAATTTCTTTTTTCCGATACCTTCTAGGTAATTTTGGTGAAGTAGTCAATGTTGAGCTGGCAATGGATCGCACAGTGAGTTTGTACCATGTTGTATTTAACAAGTTTTTCTTGAATAATATATTGATACATCTGTTTAAATGCATACAGGTCAACCTTCCTAAAGGATATGGATATGTTGAATTCAAAACGAGATCTGATGCTGAAAAAGCCCAAGTGTATATGGATGGTGTATGTTTTGCTTAAATGTTCAAGTACTTGAAGTGCATCTATTGATAATGCCATCACTGGGAAATGATTGTGATGATTGGCTAACTGTAGGCCCAAATTGATGGAAATGTTATTCGAGCAAGATTTACATTGCCTCAAAGACAGAAAATGGCATCACCTCCAAGGACTGCAGCAGCTGCTTCTAAGAGAGATGGTCCTAAGCCTGAAAATGTTGGTGCTGATGCTGAGAAGGACGATATGAAAAGACAGAGAGAACGTATAACTCATTAATTATATATTTTTTCAATGTCTAACGTTTCCCCCCCTATTATTCTACTTTATCTTATTTTTCATGGGAGTATATTGTTTTAGTGATTTGTTTCTGGTTTGTTACATCAGCTTCACCTCGTCGAAAGCCTCCCTCACCTAGAAGACGCTCGCCTGTTGCTCGACGAGGTGGGTCTCCCAGAAGACAACCTGATTCTCCACGCCGCCGTCCGGAGTCTCCTCCCCGTCGCCGTGTTGACTCTCCTCCTAGAAGGAGGCCTGCATCACCAATGAGAGGTGGCCGTTCCCCATCACCTTTGGGAAGGCGACATAGATCTCCCCCAAGGTTGAGTATCATCCCCCTCCCACCCACCCACCCACACACACACACACCAAATTTATCTCTTTCTTTTAATGGTGAGAGCATCAACATTGTTTAACTTTGGTGATTAGGCCCTCTCCAAGAAGAATTCGTGGCAGCCCTGTTCGGAGACGTTCACCACCTCCTCCTAGGCGCCGGTATTATGCATTGACTGTTTTAGAAGATCGTAAATCTGTTCTCTTGCAATTTGAATGATACATGGATATGTATATTGTTGCTAACTTCACAAATATATCATATAGTGACAACGTTGACTATTAATGTCTTGCTGCACTTGTTAAATTGTATCTTATTATTTTCGAGTTGGAGCATTTGTTTAGAGAGTATTAAATTATGCAGAAAAAGCATATGTAAACATTATTTTTTTAATCTTGAATTATTGTTTTTAGAGTATGGGTTTTTATTCTTTGAAGATTTTTAGTCACTAGTTATTTTGAAGAATACTAAAAGTTGCATCAAGTTTAATTTAGTTGTGCGGTTCTTGTTGGCCATTGATGATTTTGTTATGCCTAGGTACAGGTAAACCGTGGTTTTTGGGTGATCCAAGCAAATTCAAAGTAATGCTATGGTTGACTTAGAATGAAGTAATAGCTAGTAGAGTGTAACTTTTGATGTAACTATTTAAAAATTTACTTGTTTCCATTATGGCTCAGAGTGTTCCTACAGTTGAATCTTAGGTATTAGAAGAACGGTGAATGAGGGCATGATTACTTCTAATGTTTGAGAAATTAACATATTTAAGCATGACAGTGAGCTTTTAATTTCTTGGTCACTGGTTGAGCATGGTTTATACTTGAATATGTTGTAGTCTGATTAGGTGGTTTCAGTTGCATTTATACTTCGTTAAATGAGTGTTACATAATTAAATTGTGTTTCTTTTTCAGTACACCTCCTCGACGGGCTCGAAGTCCTCCCAGAAGGTCTCCAGTAGTTCGTAGACGGAGCCGTTCACCCATTAGAAGACCAGGTCGATCACGTTCCCGGTCATTTTCACCACGGAGGTATCTGGATGCCTAACGAGTTTTTTTATTCATAATTGCCTTTTGAAGAAAAATTATTTCTTATTGTTTGATTGTGTCTACCCTGTGTTTGGGGGGCCATAAATCAAAATACTAAGTAGATCACAGAAGTTACTACCATTGTCGTTGATCAAGAAAGGAAGATAATCACAATAAACTTTCTGAGCTGTCTCAACTGAGCTAGGAAACAATTGTGCGGTGACATATTGCATTAATTCATTTGAAGGTTCTAGTTCTATTTGTCCATCATAGAGCCTTGCTAGTACCGAACCAAAGAATTATATTGGCGCAGAAACTAGGCCTCATAAGATGTTTGAATAAAGATTGGAAGTCAAATGCCCGATTATTCCATGTTTTAGAGTATTGCGTTTGGGCCCCAAGGGATCCTTCCGATCTAGACAATGGAAGCCAGCTATTGTAGGATAGCTAATCTAAAGTCGAGCATTCACAGTGCATGCTTTAGTATTTGTAAAGGGCATAACGTCTCAGATGCTCTTGGCTAAAGCAAGCCAATTGTCTTTCAAAAGAAGCATACATGTGCAGATGCATCATCTTTTTTTCAATTGTCGAACAGCTAGGCCTAGACCTAAATAATTTGCTGTTTGGTGTTGCGATCGTGGGATTTAGATTTTTTAAGGCTAGTTACAAGTACTGAATTTAACAACTCAAGCATACCATTACTTATGTATAAATTATAATGATGCTTAGAAACTAAGCTTTAACGATCTCAGCTTCCTATTTACTACCCAAGACATTGTGTAAATAATTATCAGAAATATCTCCAAATTAGTTGCATACCATTTGTATTATAAGGTTAGGTGGCTAGTCTAGTATCATATCATCTGCTACTTTACCCTTTCTATGATCGTTTACTTTTCCCTAACTATATAATATTCCACAGAGCTACTACCCTTAACTAGTTTTTTTTTGTCCACTGTAAGCATATATTTATACTTAGTTTTCTTATGGTACAGAGGTCGGCCAGGAGCTGCTGGTAGACGTGGGAGATCATCATCTTACTCTGCATCGCCAAGTCCACGGAAGGTTTGTAGTGGTTAATCTTGCCTTTTATTCTCTTCTCTGGGCTTGTTGCTTACTTTTCCTTGCATCCAAAGTCAGTTACACTATTCCTTCTTAATGTTACAGGTAGCCAGGAGAGTATCTCGCAGTCCAAGAAGGTAAACGTGTGAACTAAATAGATTATTGGTCGACATGTCGATATTCCTCTGGATGTTGAGAATATTAGGGCTTGGTTCTTGGACTTTTTGCTGTTTCTTCTTTTACTAACTATGAATATTTTTCGAAACTCGCTAACCACTGAGCTTCTAGATAAACAAGATGACCAGGGTACGGTGCCCATTTTATAGTGAGTTTAGGATGACATTTGAAAAAGATAAAAGTACCAACTTCTTAGCACTAATTAAGTGCTTCTAAAAGTAGGCACTTTAATGCTTTTCAAGTGCCTTTGGTGTTCTGTGATCTTGGTTATTTTGCCAAACCCTGCAAAGTTATCAAATAAAGTACTTTTAGTTCGCTAAAAGCACTTTTTACTGTTCTGAAAGTCATTAGAACAGCTTTTAATCCGTATTCTTGTCGTCGTTATTATAATGCGATTGTTTTTGCTGTGTAGTAGGCCACTGAGAGGTAGAAGCAGCAGCAGGAGCAGTAGCAGTAGTTCTCCACCTCGCAAGCCATAAGAACTCGTCTATGTATCGTTCGGTCTCTCTCTAATTCTCTCTTGTTCATCTAGTGAAAACCCTTCTTGTAGCAAAAATATTTGGATTAAATGCCATTTAGGTTTAGTTTCCTGTTGTTATGAATCGTTTACATATGCTTTGTTCCAGCAGCTGCAGTCTGTAGTAATATTACACTTATACAATAGAAAGCCCAGACGTCGAGTTTCCCGTTTTCAAGGTTTTAGAAATATGCCCTTATATTATATGGCGTTTTTGTGTGGAAGATTCGAACCTTTGATTTGATGTCTTGATTGTGACTATATGTTTTGTATCAGTTGAGCCATGTTCGACTTGTTTAAGACGTGAACGGTAGACAATATAAATACTAAAAGTTATGTTTGTGTTTGTGTGTTGGTAGCAAATTTAGAAATTAGATTTTAGTTCAACCAATGGTTCAAAATGCCTTCTAATATATTTATGTTAAATATGAATAATTATTAACTCATTTATCAACAATTTTTCA

mRNA sequence

ATTGTTTTCTCTCTCTCATGTTTTCGTCATTTACGTGTCGACCATTTTTTTGTGTTGCTTCTCCTTTCACTATCTCTAATCTCGAACGATACCAGACGGGTTTAAGCTAGGGTTCCAATTCTTGCAGCTCTTGCTGGCCATGGCGAAACCAAGCAGAGGCCGTCGCTCGCCTCCGTCGAGATCGGGATCCTCTTCACGTTCCCGCTCATACTCCGGCTCTGATTCCCGCTCCAGTTCCCGCTCACGCTCCAGGTCACGGTCTGTATCTGTGTCCCATTCCAGGTCCATTTCCTCGTCTTCGTCTCCCTCCCGCAGTGCTAGTTCTCGGAGCCGAAGTCCCCCTCCTCAGAGAAAGAGTTCTACTGAAACAGCTCGGAGGACTCGCGCTTCACCTCCACCGGCTAAACGAAGTTCTCCACCACCCAGGAAACCATCACCTGTACGCGAGTCACTTGTTCTTCACATTGATGCACTGAGTAGGAATGTCCATGAGGGTCATTTAAGAGAAATCTTCAGTAATTTTGGTGAAGTAGTCAATGTTGAGCTGGCAATGGATCGCACAGTCAACCTTCCTAAAGGATATGGATATGTTGAATTCAAAACGAGATCTGATGCTGAAAAAGCCCAAGTGTATATGGATGGTGCCCAAATTGATGGAAATGTTATTCGAGCAAGATTTACATTGCCTCAAAGACAGAAAATGGCATCACCTCCAAGGACTGCAGCAGCTGCTTCTAAGAGAGATGGTCCTAAGCCTGAAAATGTTGGTGCTGATGCTGAGAAGGACGATATGAAAAGACAGAGAGAACCTTCACCTCGTCGAAAGCCTCCCTCACCTAGAAGACGCTCGCCTGTTGCTCGACGAGGTGGGTCTCCCAGAAGACAACCTGATTCTCCACGCCGCCGTCCGGAGTCTCCTCCCCGTCGCCGTGTTGACTCTCCTCCTAGAAGGAGGCCTGCATCACCAATGAGAGGTGGCCGTTCCCCATCACCTTTGGGAAGGCGACATAGATCTCCCCCAAGGCCCTCTCCAAGAAGAATTCGTGGCAGCCCTGTTCGGAGACGTTCACCACCTCCTCCTAGGCGCCGTACACCTCCTCGACGGGCTCGAAGTCCTCCCAGAAGGTCTCCAGTAGTTCGTAGACGGAGCCGTTCACCCATTAGAAGACCAGGTCGATCACGTTCCCGGTCATTTTCACCACGGAGAGGTCGGCCAGGAGCTGCTGGTAGACGTGGGAGATCATCATCTTACTCTGCATCGCCAAGTCCACGGAAGGTAGCCAGGAGAGTATCTCGCAGTCCAAGAAGGCCACTGAGAGGTAGAAGCAGCAGCAGGAGCAGTAGCAGTAGTTCTCCACCTCGCAAGCCATAAGAACTCGTCTATGTATCGTTCGGTCTCTCTCTAATTCTCTCTTGTTCATCTAGTGAAAACCCTTCTTGTAGCAAAAATATTTGGATTAAATGCCATTTAGGTTTAGTTTCCTGTTGTTATGAATCGTTTACATATGCTTTGTTCCAGCAGCTGCAGTCTGTAGTAATATTACACTTATACAATAGAAAGCCCAGACGTCGAGTTTCCCGTTTTCAAGGTTTTAGAAATATGCCCTTATATTATATGGCGTTTTTGTGTGGAAGATTCGAACCTTTGATTTGATGTCTTGATTGTGACTATATGTTTTGTATCAGTTGAGCCATGTTCGACTTGTTTAAGACGTGAACGGTAGACAATATAAATACTAAAAGTTATGTTTGTGTTTGTGTGTTGGTAGCAAATTTAGAAATTAGATTTTAGTTCAACCAATGGTTCAAAATGCCTTCTAATATATTTATGTTAAATATGAATAATTATTAACTCATTTATCAACAATTTTTCA

Coding sequence (CDS)

ATGGCGAAACCAAGCAGAGGCCGTCGCTCGCCTCCGTCGAGATCGGGATCCTCTTCACGTTCCCGCTCATACTCCGGCTCTGATTCCCGCTCCAGTTCCCGCTCACGCTCCAGGTCACGGTCTGTATCTGTGTCCCATTCCAGGTCCATTTCCTCGTCTTCGTCTCCCTCCCGCAGTGCTAGTTCTCGGAGCCGAAGTCCCCCTCCTCAGAGAAAGAGTTCTACTGAAACAGCTCGGAGGACTCGCGCTTCACCTCCACCGGCTAAACGAAGTTCTCCACCACCCAGGAAACCATCACCTGTACGCGAGTCACTTGTTCTTCACATTGATGCACTGAGTAGGAATGTCCATGAGGGTCATTTAAGAGAAATCTTCAGTAATTTTGGTGAAGTAGTCAATGTTGAGCTGGCAATGGATCGCACAGTCAACCTTCCTAAAGGATATGGATATGTTGAATTCAAAACGAGATCTGATGCTGAAAAAGCCCAAGTGTATATGGATGGTGCCCAAATTGATGGAAATGTTATTCGAGCAAGATTTACATTGCCTCAAAGACAGAAAATGGCATCACCTCCAAGGACTGCAGCAGCTGCTTCTAAGAGAGATGGTCCTAAGCCTGAAAATGTTGGTGCTGATGCTGAGAAGGACGATATGAAAAGACAGAGAGAACCTTCACCTCGTCGAAAGCCTCCCTCACCTAGAAGACGCTCGCCTGTTGCTCGACGAGGTGGGTCTCCCAGAAGACAACCTGATTCTCCACGCCGCCGTCCGGAGTCTCCTCCCCGTCGCCGTGTTGACTCTCCTCCTAGAAGGAGGCCTGCATCACCAATGAGAGGTGGCCGTTCCCCATCACCTTTGGGAAGGCGACATAGATCTCCCCCAAGGCCCTCTCCAAGAAGAATTCGTGGCAGCCCTGTTCGGAGACGTTCACCACCTCCTCCTAGGCGCCGTACACCTCCTCGACGGGCTCGAAGTCCTCCCAGAAGGTCTCCAGTAGTTCGTAGACGGAGCCGTTCACCCATTAGAAGACCAGGTCGATCACGTTCCCGGTCATTTTCACCACGGAGAGGTCGGCCAGGAGCTGCTGGTAGACGTGGGAGATCATCATCTTACTCTGCATCGCCAAGTCCACGGAAGGTAGCCAGGAGAGTATCTCGCAGTCCAAGAAGGCCACTGAGAGGTAGAAGCAGCAGCAGGAGCAGTAGCAGTAGTTCTCCACCTCGCAAGCCATAA

Protein sequence

MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSASSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGHLREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARFTLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVARRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRRIRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPGAAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP

Homology

[Close]

BLAST of Carg14779-RA vs. NCBI nr
Match: XP_023525494.1 (serine/arginine-rich splicing factor SR45-like isoform X2 [Cucurbita pepo subsp. pepo] >KAG7037487.1 Serine/arginine-rich splicing factor SR45 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 698.0 bits (1800), Expect = 5.0e-197
Identity = 410/410 (100.00%), Postives = 410/410 (100.00%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA
Sbjct: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60

Query: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120
           SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH
Sbjct: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120

Query: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180
           LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF
Sbjct: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180

Query: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA 240
           TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA
Sbjct: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA 240

Query: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300
           RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR
Sbjct: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300

Query: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360
           IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG
Sbjct: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360

Query: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 411
           AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 410

[Close]

BLAST of Carg14779-RA vs. NCBI nr
Match: XP_022940299.1 (serine/arginine-rich splicing factor SR45-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 696.8 bits (1797), Expect = 1.1e-196
Identity = 409/410 (99.76%), Postives = 410/410 (100.00%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA
Sbjct: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60

Query: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120
           SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH
Sbjct: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120

Query: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180
           LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF
Sbjct: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180

Query: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA 240
           TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDD+KRQREPSPRRKPPSPRRRSPVA
Sbjct: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDLKRQREPSPRRKPPSPRRRSPVA 240

Query: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300
           RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR
Sbjct: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300

Query: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360
           IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG
Sbjct: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360

Query: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 411
           AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 410

[Close]

BLAST of Carg14779-RA vs. NCBI nr
Match: XP_022981103.1 (serine/arginine-rich splicing factor SR45-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 693.3 bits (1788), Expect = 1.2e-195
Identity = 407/410 (99.27%), Postives = 409/410 (99.76%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA
Sbjct: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60

Query: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120
           SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH
Sbjct: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120

Query: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180
           LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF
Sbjct: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180

Query: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA 240
           TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDD+KRQREPSPRRKPPSPRRRSPVA
Sbjct: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDIKRQREPSPRRKPPSPRRRSPVA 240

Query: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300
           RRGGSPRR PDSPRRRP+SPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR
Sbjct: 241 RRGGSPRRHPDSPRRRPDSPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300

Query: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360
           IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG
Sbjct: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360

Query: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 411
           AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 410

[Close]

BLAST of Carg14779-RA vs. NCBI nr
Match: XP_023525493.1 (serine/arginine-rich splicing factor SR45-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 693.3 bits (1788), Expect = 1.2e-195
Identity = 410/411 (99.76%), Postives = 410/411 (99.76%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA
Sbjct: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60

Query: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120
           SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH
Sbjct: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120

Query: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180
           LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF
Sbjct: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180

Query: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA 240
           TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA
Sbjct: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA 240

Query: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300
           RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR
Sbjct: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300

Query: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360
           IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG
Sbjct: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360

Query: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPR-RPLRGRSSSRSSSSSSPPRKP 411
           AAGRRGRSSSYSASPSPRKVARRVSRSPR RPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRSRPLRGRSSSRSSSSSSPPRKP 411

[Close]

BLAST of Carg14779-RA vs. NCBI nr
Match: XP_022940297.1 (serine/arginine-rich splicing factor SR45-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 692.2 bits (1785), Expect = 2.7e-195
Identity = 409/411 (99.51%), Postives = 410/411 (99.76%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA
Sbjct: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60

Query: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120
           SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH
Sbjct: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120

Query: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180
           LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF
Sbjct: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180

Query: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA 240
           TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDD+KRQREPSPRRKPPSPRRRSPVA
Sbjct: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDLKRQREPSPRRKPPSPRRRSPVA 240

Query: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300
           RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR
Sbjct: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300

Query: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360
           IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG
Sbjct: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360

Query: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPR-RPLRGRSSSRSSSSSSPPRKP 411
           AAGRRGRSSSYSASPSPRKVARRVSRSPR RPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRSRPLRGRSSSRSSSSSSPPRKP 411

[Close]

BLAST of Carg14779-RA vs. ExPASy Swiss-Prot
Match: Q9SEE9 (Serine/arginine-rich splicing factor SR45 OS=Arabidopsis thaliana OX=3702 GN=SR45 PE=1 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 2.8e-110
Identity = 293/418 (70.10%), Postives = 333/418 (79.67%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRS PS SGSSSRS S S S S S SRS SRSR    S SRS+SSSSSPSRS 
Sbjct: 1   MAKPSRGRRS-PSVSGSSSRSSSRSRSGS-SPSRSISRSR----SRSRSLSSSSSPSRSV 60

Query: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120
           SS SRSPP + KS    ARR R+ PPP  + +  P K + V+ESLVLH+D+LSRNV+E H
Sbjct: 61  SSGSRSPPRRGKSPAGPARRGRSPPPPPSKGASSPSKKA-VQESLVLHVDSLSRNVNEAH 120

Query: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180
           L+EIF NFGEV++VE+AMDR VNLP+G+GYVEFK R+DAEKAQ+YMDGAQIDG V++A F
Sbjct: 121 LKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATF 180

Query: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKD-DMKRQREPSPRRKPP-SPRRRSP 240
           TLP RQK++SPP+  +AA KRD PK +N  ADAEKD   +R RE SP+RK   SPRRRSP
Sbjct: 181 TLPPRQKVSSPPKPVSAAPKRDAPKSDNAAADAEKDGGPRRPRETSPQRKTGLSPRRRSP 240

Query: 241 VARRGGSPRRQ-PDSP-RRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRP 300
           + RRG SPRR+ PDSP RRRP SP RRR D+PPRRRPASP RG    SP  RR+RSPPR 
Sbjct: 241 LPRRGLSPRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPPRG 300

Query: 301 SPRRIRGSPVRRRSPPPPRRRT-PPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPR 360
           SPRRIRGSPVRRRSP P RRR+ PPRR RSPPRRSP +RRRSRSPIRRPGRSRS S SPR
Sbjct: 301 SPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSP-IRRRSRSPIRRPGRSRSSSISPR 360

Query: 361 RGRPGAAGRRGRSSSYSASPSPRKVARRV--SRSPRRPLRG-RSSSRSSSSSSPPRKP 411
           +GR G AGRRGRSSSYS+SPSPR++ R++  SRSP+RPLRG RSSS SSSSSSPP  P
Sbjct: 361 KGR-GPAGRRGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNSSSSSSPPPPP 409

[Close]

BLAST of Carg14779-RA vs. ExPASy Swiss-Prot
Match: Q3KPW1 (RNA-binding protein with serine-rich domain 1-B OS=Xenopus laevis OX=8355 GN=rnps1-b PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-18
Identity = 108/256 (42.19%), Postives = 138/256 (53.91%), Query Frame = 0


Query: 5   SRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSASSRS 64
           ++ RRS  S S SSSRSRS S S S S S S S S S S + SRS SSSSS S S+SS S
Sbjct: 39  AKKRRSASSGSSSSSRSRSSSSSSSSSGSSSGSSSGSSSSASSRSGSSSSSRSSSSSSSS 98

Query: 65  RSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGHLREI 124
            SP P R+   +  RR+R+     KR     ++ SP      +HI  L+RNV + H+ EI
Sbjct: 99  GSPSPSRRRH-DNRRRSRSKSKQPKRDEKERKRRSPSPRPTKVHIGRLTRNVTKDHILEI 158

Query: 125 FSNFGEVVNVELAMDR-TVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARFTLP 184
           FS +G++  +++ +DR   +L KGY YVEF+   +AEKA  +MDG QIDG  I A   L 
Sbjct: 159 FSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKHMDGGQIDGQEITASAVLT 218

Query: 185 QRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVARRG 244
                A P R   +  +R  P P           M R+  P  RR+  SPRRRSPV RR 
Sbjct: 219 PWPMRAMPRR--FSPPRRMLPPP----------PMWRRSPPRMRRRSRSPRRRSPVRRRS 278

Query: 245 GSPRRQPDSPRRRPES 260
            SP R+    R    S
Sbjct: 279 RSPARRRHRSRSSSNS 281

[Close]

BLAST of Carg14779-RA vs. ExPASy Swiss-Prot
Match: Q28E41 (RNA-binding protein with serine-rich domain 1 OS=Xenopus tropicalis OX=8364 GN=rnps1 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.6e-18
Identity = 110/257 (42.80%), Postives = 138/257 (53.70%), Query Frame = 0


Query: 5   SRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVS-HSRSISSSSSPSRSASSR 64
           +R RRS  S S SSSRSRS S S S S S S S S S S S  SRS SSSSS S S+SS 
Sbjct: 64  ARKRRSASSGSSSSSRSRSSSSSSSSSGSSSGSSSGSSSSSASSRSGSSSSSRSSSSSSS 123

Query: 65  SRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGHLRE 124
           S SP P R+   +  RR+R+     KR     ++ SP      +HI  L+RNV + H+ E
Sbjct: 124 SGSPSPSRRRH-DNRRRSRSKSKQPKRDEKERKRRSPSPRPTKVHIGRLTRNVTKDHILE 183

Query: 125 IFSNFGEVVNVELAMDR-TVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARFTL 184
           IFS +G++  +++ +DR   +L KGY YVEF+   +AEKA  +MDG QIDG  I A   L
Sbjct: 184 IFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKHMDGGQIDGQEITASAVL 243

Query: 185 PQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVARR 244
                 A P R   +  +R  P P           M R+  P  RR+  SPRRRSPV RR
Sbjct: 244 TPWPMRAMPRR--FSPPRRMLPPP----------PMWRRSPPRMRRRSRSPRRRSPVRRR 303

Query: 245 GGSPRRQPDSPRRRPES 260
             SP R+    R    S
Sbjct: 304 SRSPARRRHRSRSSSNS 307

[Close]

BLAST of Carg14779-RA vs. ExPASy Swiss-Prot
Match: Q5XG24 (RNA-binding protein with serine-rich domain 1-A OS=Xenopus laevis OX=8355 GN=rnps1-a PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.3e-18
Identity = 110/261 (42.15%), Postives = 139/261 (53.26%), Query Frame = 0


Query: 5   SRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSASSRS 64
           ++ RRS  S S SSS SRS S S S S S S S S S S + SRS SSSSS S S+SS S
Sbjct: 39  AKKRRSGSSGSSSSSHSRSSSSSSSSSGSSSGSSSGSSSSASSRSGSSSSSRSSSSSSSS 98

Query: 65  RSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGHLREI 124
            SP P R+   +  RR+R+     KR     ++ SP      +HI  L+RNV + H+ EI
Sbjct: 99  GSPSPSRRRH-DNRRRSRSKSKQPKRDEKERKRRSPSPRPTKVHIGRLTRNVTKDHILEI 158

Query: 125 FSNFGEVVNVELAMDR-TVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARFTL- 184
           FS +G++  +++ +DR   +L KGY YVEF+   +AEKA  +MDG QIDG  I A   L 
Sbjct: 159 FSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKHMDGGQIDGQEITASAVLT 218

Query: 185 --PQR--QKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSP 244
             P R   +  SPPR       R  P P           M R+  P  RR+  SPRRRSP
Sbjct: 219 PWPMRPMPRRFSPPR-------RMLPPP----------PMWRRSPPRMRRRSRSPRRRSP 278

Query: 245 VARRGGSPRRQPDSPRRRPES 260
           V RR  SP R+    R    S
Sbjct: 279 VRRRSRSPARRRHRSRSSSNS 281

[Close]

BLAST of Carg14779-RA vs. ExPASy Swiss-Prot
Match: Q15287 (RNA-binding protein with serine-rich domain 1 OS=Homo sapiens OX=9606 GN=RNPS1 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.4e-16
Identity = 106/257 (41.25%), Postives = 141/257 (54.86%), Query Frame = 0


Query: 5   SRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVS-HSRSISSSSSPSRSASSR 64
           +R RRS  S S SS+RSRS S S S SS+ + S S S S S  SRS SSS+S S S+SS 
Sbjct: 62  TRKRRSASSGS-SSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 121

Query: 65  SRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGHLRE 124
           S SP P R+   +  RR+R+   P KR     ++ SP  +   +HI  L+RNV + H+ E
Sbjct: 122 SGSPSPSRRRH-DNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIME 181

Query: 125 IFSNFGEVVNVELAMDRT-VNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARFTL 184
           IFS +G++  +++ ++R   +L KGY YVEF+   +AEKA  +MDG QIDG  I A   L
Sbjct: 182 IFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 241

Query: 185 PQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVARR 244
               +   PPR  +   +   P P           M R+  P  RR+  SPRRRSPV RR
Sbjct: 242 APWPR--PPPRRFSPPRRMLPPPP-----------MWRRSPPRMRRRSRSPRRRSPVRRR 301

Query: 245 GGSPRRQPDSPRRRPES 260
             SP R+    R    S
Sbjct: 302 SRSPGRRRHRSRSSSNS 303

[Close]

BLAST of Carg14779-RA vs. ExPASy TrEMBL
Match: A0A6J1FJN7 (serine/arginine-rich splicing factor SR45-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445960 PE=4 SV=1)

HSP 1 Score: 696.8 bits (1797), Expect = 5.3e-197
Identity = 409/410 (99.76%), Postives = 410/410 (100.00%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA
Sbjct: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60

Query: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120
           SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH
Sbjct: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120

Query: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180
           LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF
Sbjct: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180

Query: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA 240
           TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDD+KRQREPSPRRKPPSPRRRSPVA
Sbjct: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDLKRQREPSPRRKPPSPRRRSPVA 240

Query: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300
           RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR
Sbjct: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300

Query: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360
           IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG
Sbjct: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360

Query: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 411
           AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 410

[Close]

BLAST of Carg14779-RA vs. ExPASy TrEMBL
Match: A0A6J1J163 (serine/arginine-rich splicing factor SR45-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480352 PE=4 SV=1)

HSP 1 Score: 693.3 bits (1788), Expect = 5.9e-196
Identity = 407/410 (99.27%), Postives = 409/410 (99.76%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA
Sbjct: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60

Query: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120
           SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH
Sbjct: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120

Query: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180
           LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF
Sbjct: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180

Query: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA 240
           TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDD+KRQREPSPRRKPPSPRRRSPVA
Sbjct: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDIKRQREPSPRRKPPSPRRRSPVA 240

Query: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300
           RRGGSPRR PDSPRRRP+SPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR
Sbjct: 241 RRGGSPRRHPDSPRRRPDSPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300

Query: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360
           IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG
Sbjct: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360

Query: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 411
           AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 410

[Close]

BLAST of Carg14779-RA vs. ExPASy TrEMBL
Match: A0A6J1FJ74 (serine/arginine-rich splicing factor SR45-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445960 PE=4 SV=1)

HSP 1 Score: 692.2 bits (1785), Expect = 1.3e-195
Identity = 409/411 (99.51%), Postives = 410/411 (99.76%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA
Sbjct: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60

Query: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120
           SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH
Sbjct: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120

Query: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180
           LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF
Sbjct: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180

Query: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA 240
           TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDD+KRQREPSPRRKPPSPRRRSPVA
Sbjct: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDLKRQREPSPRRKPPSPRRRSPVA 240

Query: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300
           RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR
Sbjct: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300

Query: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360
           IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG
Sbjct: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360

Query: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPR-RPLRGRSSSRSSSSSSPPRKP 411
           AAGRRGRSSSYSASPSPRKVARRVSRSPR RPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRSRPLRGRSSSRSSSSSSPPRKP 411

[Close]

BLAST of Carg14779-RA vs. ExPASy TrEMBL
Match: A0A6J1IT16 (serine/arginine-rich splicing factor SR45-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480352 PE=4 SV=1)

HSP 1 Score: 688.7 bits (1776), Expect = 1.5e-194
Identity = 407/411 (99.03%), Postives = 409/411 (99.51%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA
Sbjct: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60

Query: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120
           SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH
Sbjct: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120

Query: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180
           LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF
Sbjct: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180

Query: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA 240
           TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDD+KRQREPSPRRKPPSPRRRSPVA
Sbjct: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDIKRQREPSPRRKPPSPRRRSPVA 240

Query: 241 RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300
           RRGGSPRR PDSPRRRP+SPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR
Sbjct: 241 RRGGSPRRHPDSPRRRPDSPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR 300

Query: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360
           IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG
Sbjct: 301 IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG 360

Query: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPR-RPLRGRSSSRSSSSSSPPRKP 411
           AAGRRGRSSSYSASPSPRKVARRVSRSPR RPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 AAGRRGRSSSYSASPSPRKVARRVSRSPRSRPLRGRSSSRSSSSSSPPRKP 411

[Close]

BLAST of Carg14779-RA vs. ExPASy TrEMBL
Match: A0A0A0KZM9 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G607050 PE=4 SV=1)

HSP 1 Score: 641.3 bits (1653), Expect = 2.7e-180
Identity = 387/419 (92.36%), Postives = 393/419 (93.79%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSV--SVSHSRSISSSSSPSR 60
           MAKPSRGRRSPPS S SSSRSRS+SGSDSRSSSRSRSRS SV  S S SRSISSSSS SR
Sbjct: 1   MAKPSRGRRSPPSGSASSSRSRSFSGSDSRSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60

Query: 61  SASSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHE 120
           S SSRSRSPPPQRKS TETARR+RASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHE
Sbjct: 61  SGSSRSRSPPPQRKSPTETARRSRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHE 120

Query: 121 GHLREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRA 180
           GHLREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRA
Sbjct: 121 GHLREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRA 180

Query: 181 RFTLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSP 240
           RFTLPQRQKM +PPRT A   KRDGPKPENVG DAEKDDMKRQREPSPRRKPPSPRRRSP
Sbjct: 181 RFTLPQRQKMPTPPRTVATVPKRDGPKPENVGPDAEKDDMKRQREPSPRRKPPSPRRRSP 240

Query: 241 VARRGGSPRRQPDSPRRRPESPPRRRVDS-------PPRRRPASPMRGGRSPSPLGRRHR 300
           VARRGGSPRRQPDSPRRRP+SPPRRR++S       PPRRRPASPMRGGRSPSPL RRHR
Sbjct: 241 VARRGGSPRRQPDSPRRRPDSPPRRRIESPFRRDSPPPRRRPASPMRGGRSPSPLARRHR 300

Query: 301 SPPRPSPRRIRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRS 360
           SPPRPSPRRIRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRP RSRSRS
Sbjct: 301 SPPRPSPRRIRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRS 360

Query: 361 FSPRRGRPGAAGRRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPRKP 411
           FSPRRGRPGAAGRRGRSSSYSASPSPRKV RRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 FSPRRGRPGAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 419

[Close]

BLAST of Carg14779-RA vs. TAIR 10
Match: AT1G16610.1 (arginine/serine-rich 45 )

HSP 1 Score: 400.2 bits (1027), Expect = 2.0e-111
Identity = 293/418 (70.10%), Postives = 333/418 (79.67%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRS PS SGSSSRS S S S S S SRS SRSR    S SRS+SSSSSPSRS 
Sbjct: 1   MAKPSRGRRS-PSVSGSSSRSSSRSRSGS-SPSRSISRSR----SRSRSLSSSSSPSRSV 60

Query: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120
           SS SRSPP + KS    ARR R+ PPP  + +  P K + V+ESLVLH+D+LSRNV+E H
Sbjct: 61  SSGSRSPPRRGKSPAGPARRGRSPPPPPSKGASSPSKKA-VQESLVLHVDSLSRNVNEAH 120

Query: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180
           L+EIF NFGEV++VE+AMDR VNLP+G+GYVEFK R+DAEKAQ+YMDGAQIDG V++A F
Sbjct: 121 LKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATF 180

Query: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKD-DMKRQREPSPRRKPP-SPRRRSP 240
           TLP RQK++SPP+  +AA KRD PK +N  ADAEKD   +R RE SP+RK   SPRRRSP
Sbjct: 181 TLPPRQKVSSPPKPVSAAPKRDAPKSDNAAADAEKDGGPRRPRETSPQRKTGLSPRRRSP 240

Query: 241 VARRGGSPRRQ-PDSP-RRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRP 300
           + RRG SPRR+ PDSP RRRP SP RRR D+PPRRRPASP RG    SP  RR+RSPPR 
Sbjct: 241 LPRRGLSPRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPPRG 300

Query: 301 SPRRIRGSPVRRRSPPPPRRRT-PPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPR 360
           SPRRIRGSPVRRRSP P RRR+ PPRR RSPPRRSP +RRRSRSPIRRPGRSRS S SPR
Sbjct: 301 SPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSP-IRRRSRSPIRRPGRSRSSSISPR 360

Query: 361 RGRPGAAGRRGRSSSYSASPSPRKVARRV--SRSPRRPLRG-RSSSRSSSSSSPPRKP 411
           +GR G AGRRGRSSSYS+SPSPR++ R++  SRSP+RPLRG RSSS SSSSSSPP  P
Sbjct: 361 KGR-GPAGRRGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNSSSSSSPPPPP 409

[Close]

BLAST of Carg14779-RA vs. TAIR 10
Match: AT1G16610.2 (arginine/serine-rich 45 )

HSP 1 Score: 393.7 bits (1010), Expect = 1.9e-109
Identity = 289/416 (69.47%), Postives = 329/416 (79.09%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRS PS SGSSSRS S S S S S SRS SRSR    S SRS+SSSSSPSRS 
Sbjct: 1   MAKPSRGRRS-PSVSGSSSRSSSRSRSGS-SPSRSISRSR----SRSRSLSSSSSPSRSV 60

Query: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120
           SS SRSPP + KS    ARR R+ PPP  + +  P K + V+ESLVLH+D+LSRNV+E H
Sbjct: 61  SSGSRSPPRRGKSPAGPARRGRSPPPPPSKGASSPSKKA-VQESLVLHVDSLSRNVNEAH 120

Query: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180
           L+EIF NFGEV++VE+AMDR VNLP+G+GYVEFK R+DAEKAQ+YMDGAQIDG V++A F
Sbjct: 121 LKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATF 180

Query: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDMKRQREPSPRRKPPSPRRRSPVA 240
           TLP RQK++SPP+  +AA KRD PK +N  ADAEKD   R+    PR +  SPRRRSP+ 
Sbjct: 181 TLPPRQKVSSPPKPVSAAPKRDAPKSDNAAADAEKDGGPRR----PRER-LSPRRRSPLP 240

Query: 241 RRGGSPRRQ-PDSP-RRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSP 300
           RRG SPRR+ PDSP RRRP SP RRR D+PPRRRPASP RG    SP  RR+RSPPR SP
Sbjct: 241 RRGLSPRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPPRGSP 300

Query: 301 RRIRGSPVRRRSPPPPRRRT-PPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRG 360
           RRIRGSPVRRRSP P RRR+ PPRR RSPPRRSP +RRRSRSPIRRPGRSRS S SPR+G
Sbjct: 301 RRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSP-IRRRSRSPIRRPGRSRSSSISPRKG 360

Query: 361 RPGAAGRRGRSSSYSASPSPRKVARRV--SRSPRRPLRG-RSSSRSSSSSSPPRKP 411
           R G AGRRGRSSSYS+SPSPR++ R++  SRSP+RPLRG RSSS SSSSSSPP  P
Sbjct: 361 R-GPAGRRGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNSSSSSSPPPPP 402

[Close]

BLAST of Carg14779-RA vs. TAIR 10
Match: AT1G16610.3 (arginine/serine-rich 45 )

HSP 1 Score: 392.9 bits (1008), Expect = 3.2e-109
Identity = 292/428 (68.22%), Postives = 332/428 (77.57%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA 60
           MAKPSRGRRS PS SGSSSRS S S S S S SRS SRSR    S SRS+SSSSSPSRS 
Sbjct: 1   MAKPSRGRRS-PSVSGSSSRSSSRSRSGS-SPSRSISRSR----SRSRSLSSSSSPSRSV 60

Query: 61  SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH 120
           SS SRSPP + KS    ARR R+ PPP  + +  P K + V+ESLVLH+D+LSRNV+E H
Sbjct: 61  SSGSRSPPRRGKSPAGPARRGRSPPPPPSKGASSPSKKA-VQESLVLHVDSLSRNVNEAH 120

Query: 121 LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF 180
           L+EIF NFGEV++VE+AMDR VNLP+G+GYVEFK R+DAEKAQ+YMDGAQIDG V++A F
Sbjct: 121 LKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATF 180

Query: 181 TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKD-DMKRQREPSPRRKPP-SPRRRSP 240
           TLP RQK++SPP+  +AA KRD PK +N  ADAEKD   +R RE SP+RK   SPRRRSP
Sbjct: 181 TLPPRQKVSSPPKPVSAAPKRDAPKSDNAAADAEKDGGPRRPRETSPQRKTGLSPRRRSP 240

Query: 241 VARRGGSPRRQ-PDSP-RRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRP 300
           + RRG SPRR+ PDSP RRRP SP RRR D+PPRRRPASP RG    SP  RR+RSPPR 
Sbjct: 241 LPRRGLSPRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPPRG 300

Query: 301 SPRRIRGSPVRRRSPPPPRRRT-PPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPR 360
           SPRRIRGSPVRRRSP P RRR+ PPRR RSPPRRSP +RRRSRSPIRRPGRSRS S SPR
Sbjct: 301 SPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSP-IRRRSRSPIRRPGRSRSSSISPR 360

Query: 361 R----------GRPGAAGRRGRSSSYSASPSPRKVARRV--SRSPRRPLRG-RSSSRSSS 411
           +          G  G AGRRGRSSSYS+SPSPR++ R++  SRSP+RPLRG RSSS SSS
Sbjct: 361 KYVGTHLNFFLGGRGPAGRRGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNSSS 420

The following BLAST results are available for this feature:

BLAST of Carg14779-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525494.1	5.0e-197	100.00	serine/arginine-rich splicing factor SR45-like isoform X2 [Cucurbita pepo subsp....	[more]
XP_022940299.1	1.1e-196	99.76	serine/arginine-rich splicing factor SR45-like isoform X2 [Cucurbita moschata]	[more]
XP_022981103.1	1.2e-195	99.27	serine/arginine-rich splicing factor SR45-like isoform X2 [Cucurbita maxima]	[more]
XP_023525493.1	1.2e-195	99.76	serine/arginine-rich splicing factor SR45-like isoform X1 [Cucurbita pepo subsp....	[more]
XP_022940297.1	2.7e-195	99.51	serine/arginine-rich splicing factor SR45-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg14779-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEE9	2.8e-110	70.10	Serine/arginine-rich splicing factor SR45 OS=Arabidopsis thaliana OX=3702 GN=SR4...	[more]
Q3KPW1	1.1e-18	42.19	RNA-binding protein with serine-rich domain 1-B OS=Xenopus laevis OX=8355 GN=rnp...	[more]
Q28E41	5.6e-18	42.80	RNA-binding protein with serine-rich domain 1 OS=Xenopus tropicalis OX=8364 GN=r...	[more]
Q5XG24	7.3e-18	42.15	RNA-binding protein with serine-rich domain 1-A OS=Xenopus laevis OX=8355 GN=rnp...	[more]
Q15287	2.4e-16	41.25	RNA-binding protein with serine-rich domain 1 OS=Homo sapiens OX=9606 GN=RNPS1 P...	[more]

BLAST of Carg14779-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJN7	5.3e-197	99.76	serine/arginine-rich splicing factor SR45-like isoform X2 OS=Cucurbita moschata ...	[more]
A0A6J1J163	5.9e-196	99.27	serine/arginine-rich splicing factor SR45-like isoform X2 OS=Cucurbita maxima OX...	[more]
A0A6J1FJ74	1.3e-195	99.51	serine/arginine-rich splicing factor SR45-like isoform X1 OS=Cucurbita moschata ...	[more]
A0A6J1IT16	1.5e-194	99.03	serine/arginine-rich splicing factor SR45-like isoform X1 OS=Cucurbita maxima OX...	[more]
A0A0A0KZM9	2.7e-180	92.36	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G607050 PE=4 SV...	[more]

BLAST of Carg14779-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16610.1	2.0e-111	70.10	arginine/serine-rich 45	[more]
AT1G16610.2	1.9e-109	69.47	arginine/serine-rich 45	[more]
AT1G16610.3	3.2e-109	68.22	arginine/serine-rich 45	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 106..179 e-value: 1.2E-18 score: 77.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 109..177 e-value: 2.0E-14 score: 53.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 105..183 score: 16.005526
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 3..191 e-value: 2.2E-23 score: 84.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 205..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 247..271
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..410
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 394..410
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 292..353
None	No IPR available	PANTHER	PTHR15481:SF9	BNAA09G56240D PROTEIN	coord: 1..402
None	No IPR available	PANTHER	PTHR15481	RIBONUCLEIC ACID BINDING PROTEIN S1	coord: 1..402
IPR034201	RNPS1, RNA recognition motif	CDD	cd12365	RRM_RNPS1	coord: 107..179 e-value: 7.77948E-38 score: 129.598
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 86..194

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg14779	Carg14779	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg14779-RA:1	Carg14779-RA:1	exon
Carg14779-RA:2	Carg14779-RA:2	exon
Carg14779-RA:3	Carg14779-RA:3	exon
Carg14779-RA:4	Carg14779-RA:4	exon
Carg14779-RA:5	Carg14779-RA:5	exon
Carg14779-RA:6	Carg14779-RA:6	exon
Carg14779-RA:7	Carg14779-RA:7	exon
Carg14779-RA:8	Carg14779-RA:8	exon
Carg14779-RA:9	Carg14779-RA:9	exon
Carg14779-RA:10	Carg14779-RA:10	exon
Carg14779-RA:11	Carg14779-RA:11	exon
Carg14779-RA:12	Carg14779-RA:12	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg14779-RA:five_prime_utr	Carg14779-RA:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg14779-RA:cds	Carg14779-RA:cds	CDS
Carg14779-RA:cds	Carg14779-RA:cds_2	CDS
Carg14779-RA:cds	Carg14779-RA:cds_3	CDS
Carg14779-RA:cds	Carg14779-RA:cds_4	CDS
Carg14779-RA:cds	Carg14779-RA:cds_5	CDS
Carg14779-RA:cds	Carg14779-RA:cds_6	CDS
Carg14779-RA:cds	Carg14779-RA:cds_7	CDS
Carg14779-RA:cds	Carg14779-RA:cds_8	CDS
Carg14779-RA:cds	Carg14779-RA:cds_9	CDS
Carg14779-RA:cds	Carg14779-RA:cds_10	CDS
Carg14779-RA:cds	Carg14779-RA:cds_11	CDS
Carg14779-RA:cds	Carg14779-RA:cds_12	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg14779-RA:three_prime_utr	Carg14779-RA:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg14779-RA	Carg14779-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding