Carg14502-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg14502-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING-type domain-containing protein
Location	Carg_Chr18: 8185083 .. 8185990 (+)
Sequence length	408
RNA-Seq Expression	Carg14502-RA
Synteny	Carg14502-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTCTCAAATTTCCCCCCGTCAGCTGAAGGAGTGTTGCTGTTACCAGTTCTAGTGATGAACACAGTCATGTCGATGGCTTTCTTGAAGAACTTGGTGAGATCTGTGCTACAAATGATGAGCGCCAACCCCTCGAGTTCTGCGGATGAATATGAACAGGAGAGTGGAAGAGGAAGAAGAATCTCCATTACCCATTTCAAATCCTTACGCCAAAGCTTCAATGGCGGAACAGAGACTGATAATTGCTCTGTTTCGAGGTGTTCTGTGGCAGAGTGCTCTGTTTGTCTGTGTGGATTTGAAGCTGACGAGGAAGTTAGTGAGTTGTCTTGTAAGCATTTTTTTCATAAATGTTGTCTTTCTAAATGGTTTGATAATCAGCATGTTACTTGCCCTCTCTGTCGCTCCATTCAATAGAACGCAACTTTTTTTTAAGGAAATTTTTGTGTTCTGTTCTTTTTCTTGCTGTTTGAGCTGAAGGGTATGAATGATTCACTGTTTTATTGAGCTTCTGGCGGAAACGAATTAGAATTATTGAGAGAAGTAGTCCGGCATTGGCTAAGAGGAAGATCGTGGGTAAGTAAAGGAGTACTATCTCCATCTGTATTCGTATGAGACCTTTCGGAAAACCAAAGGCAAAGTTATGTGAGTTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTTGAGATGTCTAACATGGTATAGAGTTGTATCCTTAACTTAGCTTGGTCAATAGAATCCTAAGTCGAACAAAGAAGTTGTGAGGTTTGAAGTTGTAGTCAGAGGTGACTCAAGTGTCGAACAAATAGTGTATTTTGTTTAGGGGCTTTAGAAAGAGTCGGATTGAAGGGAGATTGTTCAAGAGCTTTAGAGGAGGAGGTCTTAGGGGAGGCTCTATGA

mRNA sequence

ATGGGTCTCTCAAATTTCCCCCCGTCAGCTGAAGGAGTGTTGCTGTTACCAGTTCTAGTGATGAACACAGTCATGTCGATGGCTTTCTTGAAGAACTTGGTGAGATCTGTGCTACAAATGATGAGCGCCAACCCCTCGAGTTCTGCGGATGAATATGAACAGGAGAGTGGAAGAGGAAGAAGAATCTCCATTACCCATTTCAAATCCTTACGCCAAAGCTTCAATGGCGGAACAGAGACTGATAATTGCTCTGTTTCGAGGTGTTCTGTGGCAGAGTGCTCTGTTTGTCTGTGTGGATTTGAAGCTGACGAGGAAGTTAGTGAGTTGTCTTGGGCTTTAGAAAGAGTCGGATTGAAGGGAGATTGTTCAAGAGCTTTAGAGGAGGAGGTCTTAGGGGAGGCTCTATGA

Coding sequence (CDS)

ATGGGTCTCTCAAATTTCCCCCCGTCAGCTGAAGGAGTGTTGCTGTTACCAGTTCTAGTGATGAACACAGTCATGTCGATGGCTTTCTTGAAGAACTTGGTGAGATCTGTGCTACAAATGATGAGCGCCAACCCCTCGAGTTCTGCGGATGAATATGAACAGGAGAGTGGAAGAGGAAGAAGAATCTCCATTACCCATTTCAAATCCTTACGCCAAAGCTTCAATGGCGGAACAGAGACTGATAATTGCTCTGTTTCGAGGTGTTCTGTGGCAGAGTGCTCTGTTTGTCTGTGTGGATTTGAAGCTGACGAGGAAGTTAGTGAGTTGTCTTGGGCTTTAGAAAGAGTCGGATTGAAGGGAGATTGTTCAAGAGCTTTAGAGGAGGAGGTCTTAGGGGAGGCTCTATGA

Protein sequence

MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVSELSWALERVGLKGDCSRALEEEVLGEAL

Homology

[Close]

BLAST of Carg14502-RA vs. NCBI nr
Match: KAG7012781.1 (hypothetical protein SDJN02_25534, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 262.3 bits (669), Expect = 2.3e-66
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGR 60

Query: 61  RISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVSELSWALERVGLKG 120
           RISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVSELSWALERVGLKG
Sbjct: 61  RISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVSELSWALERVGLKG 120

Query: 121 DCSRALEEEVLGEAL 136
           DCSRALEEEVLGEAL
Sbjct: 121 DCSRALEEEVLGEAL 135

[Close]

BLAST of Carg14502-RA vs. NCBI nr
Match: XP_023541596.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.9 bits (533), Expect = 1.3e-50
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSS DEYEQESGRGR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSVDEYEQESGRGR 60

Query: 61  RISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVSELS 111
           RISITHFKSLRQSFNGGTET+NCSVSRCSVAECSVCLCGFEADEEVSELS
Sbjct: 61  RISITHFKSLRQSFNGGTETENCSVSRCSVAECSVCLCGFEADEEVSELS 110

[Close]

BLAST of Carg14502-RA vs. NCBI nr
Match: XP_022945499.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata])

HSP 1 Score: 209.5 bits (532), Expect = 1.8e-50
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGR R
Sbjct: 46  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRVR 105

Query: 61  RISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVSELS 111
           RISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVSELS
Sbjct: 106 RISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVSELS 155

[Close]

BLAST of Carg14502-RA vs. NCBI nr
Match: XP_022966845.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima])

HSP 1 Score: 209.1 bits (531), Expect = 2.3e-50
Identity = 107/110 (97.27%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESG+GR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGKGR 60

Query: 61  RISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVSELS 111
           RISITHFKSLRQSFNGGTET+NCSVSRC+VAECSVCLCGFEADEEVSELS
Sbjct: 61  RISITHFKSLRQSFNGGTETENCSVSRCAVAECSVCLCGFEADEEVSELS 110

[Close]

BLAST of Carg14502-RA vs. NCBI nr
Match: XP_023523084.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo] >XP_023547007.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.5 bits (410), Expect = 2.5e-36
Identity = 90/112 (80.36%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSA--NPSSSADEYEQESGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSV+QMMSA  NPSSS +E++ E+GR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 60

Query: 61  GRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVSELS 111
            RRISIT FKSL QSFN G  T+  S SRC++AEC VCLCGFEADEEVSELS
Sbjct: 61  ERRISITQFKSLGQSFNNG-GTEKGSASRCAMAECCVCLCGFEADEEVSELS 111

[Close]

BLAST of Carg14502-RA vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQM--MSANPSSSADEYEQESGR 60
           MGLS+ P  +EG+L   V+++NT +S++ +K +VRS L +  +S +PSSS+      S  
Sbjct: 1   MGLSSLPGPSEGMLC--VILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSE 60

Query: 61  GRRIS------ITHFKSLRQSFNGGTET----DNCSVSRCSVAECSVCLCGFEADEEVSE 110
               S      +   +S  + F   T T      C   + +  ECSVCL  F+ D E+++
Sbjct: 61  NSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINK 119

[Close]

BLAST of Carg14502-RA vs. ExPASy TrEMBL
Match: A0A6J1G151 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC111449716 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 8.5e-51
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGR R
Sbjct: 46  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRVR 105

Query: 61  RISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVSELS 111
           RISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVSELS
Sbjct: 106 RISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVSELS 155

[Close]

BLAST of Carg14502-RA vs. ExPASy TrEMBL
Match: A0A6J1HSQ5 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita maxima OX=3661 GN=LOC111466430 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.1e-50
Identity = 107/110 (97.27%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESG+GR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGKGR 60

Query: 61  RISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVSELS 111
           RISITHFKSLRQSFNGGTET+NCSVSRC+VAECSVCLCGFEADEEVSELS
Sbjct: 61  RISITHFKSLRQSFNGGTETENCSVSRCAVAECSVCLCGFEADEEVSELS 110

[Close]

BLAST of Carg14502-RA vs. ExPASy TrEMBL
Match: A0A6J1J1V9 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita maxima OX=3661 GN=LOC111482652 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.7e-36
Identity = 90/112 (80.36%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSA--NPSSSADEYEQESGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSV+QMMSA  NPSSS +E++ E+GR
Sbjct: 43  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 102

Query: 61  GRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVSELS 111
            RRISIT FKSL QSFN G  T+  S SRC +AEC VCLCGFEADEEVSELS
Sbjct: 103 ERRISITQFKSLGQSFNNG-GTEKGSASRCIMAECCVCLCGFEADEEVSELS 153

[Close]

BLAST of Carg14502-RA vs. ExPASy TrEMBL
Match: A0A6J1DFU2 (probable E3 ubiquitin-protein ligase XERICO OS=Momordica charantia OX=3673 GN=LOC111019714 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 5.9e-36
Identity = 89/114 (78.07%), Postives = 97/114 (85.09%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMM----SANPSSSADEYEQES 60
           MGLSNFPP AEGVLLLPVL+MNTVMSMAFLK+LVRSV+QMM    SA+PSSS +EY+ E+
Sbjct: 1   MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSEN 60

Query: 61  GRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVSELS 111
            R RRISIT FKSLRQSFNGGTE  + S SRC  AEC VCLCGFEADEEVSELS
Sbjct: 61  ARERRISITQFKSLRQSFNGGTE--DGSASRCIAAECCVCLCGFEADEEVSELS 112

[Close]

BLAST of Carg14502-RA vs. ExPASy TrEMBL
Match: A0A6J1GZI7 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC111458569 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.7e-36
Identity = 90/112 (80.36%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSA--NPSSSADEYEQESGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSV+QMMSA  NPSSS +E + E+GR
Sbjct: 75  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEELDWENGR 134

Query: 61  GRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVSELS 111
            RRISIT FKSL QSFN G  T+  S SRC +AEC VCLCGFEADEEVSELS
Sbjct: 135 ERRISITQFKSLGQSFNNG-GTEKGSASRCVMAECCVCLCGFEADEEVSELS 185

[Close]

BLAST of Carg14502-RA vs. TAIR 10
Match: AT1G67856.1 (RING/U-box superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-17
Identity = 51/113 (45.13%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSA----DEYEQES 60
           MG+S++P ++EGV  +P+LVMNTV+S++ +KN+VRSV+ M+S+  + +     D+  ++S
Sbjct: 1   MGISHYPTASEGV--MPMLVMNTVVSVSLVKNMVRSVVNMVSSETNEARNKEDDQDHEDS 60

Query: 61  GRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVSEL 110
            R RRISITHF+SL +  N G+  +          +C VCLCGF+ +EEVSEL
Sbjct: 61  KRRRRISITHFESLCE--NRGSRNER------EAMDCCVCLCGFKEEEEVSEL 103

[Close]

BLAST of Carg14502-RA vs. TAIR 10
Match: AT1G24580.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 5.0e-11
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 21  MNTVMSMAFLKNLVRSVLQMMSANPSSS--ADEYEQESGRGRRISITHFKSLRQSFNGGT 80
           MNTV+S+  LKN+VRSV Q++++   SS   D+  ++    RRISIT FKSL ++     
Sbjct: 1   MNTVVSITLLKNMVRSVFQIVASETESSMEIDDEPEDDFVTRRISITQFKSLCENIEEEE 60

Query: 81  ETDNCSVSRCSVAECSVCLCGFEADEEVSEL 110
           E            EC VCLCGF+ +EEVSEL
Sbjct: 61  EEKG--------VECCVCLCGFKEEEEVSEL 83

[Close]

BLAST of Carg14502-RA vs. TAIR 10
Match: AT2G04240.1 (RING/U-box superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 8.3e-06
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQM--MSANPSSSADEYEQESGR 60
           MGLS+ P  +EG+L   V+++NT +S++ +K +VRS L +  +S +PSSS+      S  
Sbjct: 1   MGLSSLPGPSEGMLC--VILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSE 60

Query: 61  GRRIS------ITHFKSLRQSFNGGTET----DNCSVSRCSVAECSVCLCGFEADEEVSE 110
               S      +   +S  + F   T T      C   + +  ECSVCL  F+ D E+++
Sbjct: 61  NSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINK 119

[Close]

BLAST of Carg14502-RA vs. TAIR 10
Match: AT2G04240.2 (RING/U-box superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 8.3e-06
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQM--MSANPSSSADEYEQESGR 60
           MGLS+ P  +EG+L   V+++NT +S++ +K +VRS L +  +S +PSSS+      S  
Sbjct: 1   MGLSSLPGPSEGMLC--VILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSE 60

Query: 61  GRRIS------ITHFKSLRQSFNGGTET----DNCSVSRCSVAECSVCLCGFEADEEVSE 110
               S      +   +S  + F   T T      C   + +  ECSVCL  F+ D E+++
Sbjct: 61  NSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINK 119

The following BLAST results are available for this feature:

BLAST of Carg14502-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012781.1	2.3e-66	100.00	hypothetical protein SDJN02_25534, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023541596.1	1.3e-50	98.18	probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo]	[more]
XP_022945499.1	1.8e-50	99.09	probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata]	[more]
XP_022966845.1	2.3e-50	97.27	probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima]	[more]
XP_023523084.1	2.5e-36	80.36	probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo] >XP_023...	[more]

BLAST of Carg14502-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SI09	1.2e-04	32.23	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X...	[more]

BLAST of Carg14502-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G151	8.5e-51	99.09	probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1HSQ5	1.1e-50	97.27	probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1J1V9	2.7e-36	80.36	probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1DFU2	5.9e-36	78.07	probable E3 ubiquitin-protein ligase XERICO OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1GZI7	7.7e-36	80.36	probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of Carg14502-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67856.1	1.6e-17	45.13	RING/U-box superfamily protein	[more]
AT1G24580.1	5.0e-11	45.05	RING/U-box superfamily protein	[more]
AT2G04240.1	8.3e-06	32.23	RING/U-box superfamily protein	[more]
AT2G04240.2	8.3e-06	32.23	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044249	Probable E3 ubiquitin-protein ligase XERICO-like	PANTHER	PTHR47258	FAMILY NOT NAMED	coord: 1..110
None	No IPR available	PANTHER	PTHR47258:SF3	F21J9.24-RELATED	coord: 1..110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg14502	Carg14502	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg14502-RA:2	Carg14502-RA:2	exon
Carg14502-RA:1	Carg14502-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg14502-RA:cds	Carg14502-RA:cds	CDS
Carg14502-RA:cds	Carg14502-RA:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg14502-RA	Carg14502-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding