Carg14022-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg14022-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cyclic nucleotide gated channel 1
Location	Carg_Chr02: 6515664 .. 6517198 (+)
Sequence length	375
RNA-Seq Expression	Carg14022-RA
Synteny	Carg14022-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTTTGAAGTCTTTTCCTTGTCACTTATATGAACGCCAAATGGTTTTGCATATTAAAATGTGGACTATGAATATGTTCTCTTACAAAGAAAAAGAAAAAAAGAGTAGCATTCTTCTAATGCATTGCATACATGCTTTGCAAGTGACAAAGCCAGTTATGAAACTCTCAGCATTCCTCATTTTGACCTGCTTGAAACAGACATATTTGCAATCCACCACTACAAGATTGGAAGAAATGAGAGTTAGAAGGAGAGATGCAGAACAATGGATGTCCCACCGTTTACTCCCTGAGAGCCTCCGGGAGCGAATCAGGAGGTACGAACAGTACAAGTGGCAGGAAACTAGAGGGGTTGATGAAGAGAATCTGGTTCGAAATCTTCCGAAAGATCTCAGAAGGGACATAAAGCGCCATCTCTGCTTGTCTCTGCTAATGAGGGTGAGGATCTCTCTGTTTTCTATATTCATAGTCTCATCAGACACAAGTAAATGGTTCTCTTCTTGATTTCACCATTATGCAAGACCAACTTTGGAAAATTCTTTTTCTTTGACGTTTCAGGTACCGATATTTGAAAAAATGGACGAACAACTGCTGGATGCTATGTGTGACCGTCTCAAGCCAGTACTATACACAGAGGAAAGTTATATCGTTCGGGAAGGAGACCCAGTCGATGAGATGATCTTCATAATGCGTGGCAAGTTATTGTCTGTAACTACAAATGGTGGAAGAACTGGTTTCTTTAATTCTGAACACCTCAAGGCAGGGGATTTCTGTGGAGAAGAGCTACTGACATGGGCTCTGGATCCACATTCCTCATCCAATCTACCAATTTCAACAAGAACTGTTCGAACTCTTTCAGAAGTTGAAGCATTTGCTTTGAAGGCAGATGACTTAAAGTTTGTAGCCTCACAGTTCCGTAGACTTCACAGCAAGCAGCTGCGGCACACTTTCAGGTTTTATTCACAGCAATGGAGGACATGGGCAGCGTGTTTTATACAAGCAGCGTGGCGTCGATACAGAAGAAAGAAACACGAACAGGCTCTGTTGGAAGAAGAGAACAGGTTAAAAGATGCATTGGCCAAGACAGGTGGGAGTTCTCCTAGTTTAGGTGCTACCATCTATGCATCCAGATTTGCAGCTAACATCCTAAGAACGATTCGACGCACAAGCTCACGCAAGGCCAGGATTCCCGAGAGAATACCGCCCATGTTGCTTCAGAAACCAGCAGAGCCCGACTTTACCTCTGAAGAGAATAGTTGATAGAGCAAAGGTATTCTTTGTATACAAAAGTGATGTCTATTCTATGCATTGGTTCTTATATTCCGTAATATGGGAATGAGAGAATGTTTCTGCCATGGTGTTTTGCCTAAACGCCATTGTCATTAATAGCTCGATTGATAGCAAAAGATTTCAACCTCAGGTCAGTTGGGCAGAATCCAAGCAATGGTCATTGCCTCAACTATAAGTTCATCTGGAACCCTCGTGCCTATCTATCGATCTCGTGCAGATGAGTTCGTCGAACTGGATTTGTGA

mRNA sequence

ATGCAGACATATTTGCAATCCACCACTACAAGATTGGAAGAAATGAGAGTTAGAAGGAGAGATGCAGAACAATGGATGTCCCACCGTTTACTCCCTGAGAGCCTCCGGGAGCGAATCAGGAGGTACGAACAGTACAAGTGGCAGGAAACTAGAGGGGTTGATGAAGAGAATCTGGTTCGAAATCTTCCGAAAGATCTCAGAAGGGACATAAAGCGCCATCTCTGCTTGTCTCTGCTAATGAGGCAAAAGATTTCAACCTCAGGTCAGTTGGGCAGAATCCAAGCAATGGTCATTGCCTCAACTATAAGTTCATCTGGAACCCTCGTGCCTATCTATCGATCTCGTGCAGATGAGTTCGTCGAACTGGATTTGTGA

Coding sequence (CDS)

ATGCAGACATATTTGCAATCCACCACTACAAGATTGGAAGAAATGAGAGTTAGAAGGAGAGATGCAGAACAATGGATGTCCCACCGTTTACTCCCTGAGAGCCTCCGGGAGCGAATCAGGAGGTACGAACAGTACAAGTGGCAGGAAACTAGAGGGGTTGATGAAGAGAATCTGGTTCGAAATCTTCCGAAAGATCTCAGAAGGGACATAAAGCGCCATCTCTGCTTGTCTCTGCTAATGAGGCAAAAGATTTCAACCTCAGGTCAGTTGGGCAGAATCCAAGCAATGGTCATTGCCTCAACTATAAGTTCATCTGGAACCCTCGTGCCTATCTATCGATCTCGTGCAGATGAGTTCGTCGAACTGGATTTGTGA

Protein sequence

MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVRNLPKDLRRDIKRHLCLSLLMRQKISTSGQLGRIQAMVIASTISSSGTLVPIYRSRADEFVELDL

Homology

[Close]

BLAST of Carg14022-RA vs. NCBI nr
Match: KAG7035743.1 (Cyclic nucleotide-gated ion channel 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.9 bits (603), Expect = 9.5e-59
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 60
           MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR
Sbjct: 1   MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 60

Query: 61  NLPKDLRRDIKRHLCLSLLMRQKISTSGQLGRIQAMVIASTISSSGTLVPIYRSRADEFV 120
           NLPKDLRRDIKRHLCLSLLMRQKISTSGQLGRIQAMVIASTISSSGTLVPIYRSRADEFV
Sbjct: 61  NLPKDLRRDIKRHLCLSLLMRQKISTSGQLGRIQAMVIASTISSSGTLVPIYRSRADEFV 120

Query: 121 ELDL 125
           ELDL
Sbjct: 121 ELDL 124

[Close]

BLAST of Carg14022-RA vs. NCBI nr
Match: XP_004145926.1 (cyclic nucleotide-gated ion channel 1 [Cucumis sativus] >XP_011654622.1 cyclic nucleotide-gated ion channel 1 [Cucumis sativus] >KGN49873.1 hypothetical protein Csa_000170 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-35
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1   MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 60
           MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR
Sbjct: 399 MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 458

Query: 61  NLPKDLRRDIKRHLCLSLLMRQKI 85
           NLPKDLRRDIKRHLCLSLLMR  I
Sbjct: 459 NLPKDLRRDIKRHLCLSLLMRVPI 482

[Close]

BLAST of Carg14022-RA vs. NCBI nr
Match: KAA0042557.1 (cyclic nucleotide-gated ion channel 1 [Cucumis melo var. makuwa] >TYK05961.1 cyclic nucleotide-gated ion channel 1 [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-35
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1   MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 60
           MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR
Sbjct: 409 MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 468

Query: 61  NLPKDLRRDIKRHLCLSLLMRQKI 85
           NLPKDLRRDIKRHLCLSLLMR  I
Sbjct: 469 NLPKDLRRDIKRHLCLSLLMRVPI 492

[Close]

BLAST of Carg14022-RA vs. NCBI nr
Match: XP_022957970.1 (cyclic nucleotide-gated ion channel 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-35
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1   MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 60
           MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR
Sbjct: 402 MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 461

Query: 61  NLPKDLRRDIKRHLCLSLLMRQKI 85
           NLPKDLRRDIKRHLCLSLLMR  I
Sbjct: 462 NLPKDLRRDIKRHLCLSLLMRVPI 485

[Close]

BLAST of Carg14022-RA vs. NCBI nr
Match: KAG6605775.1 (Cyclic nucleotide-gated ion channel 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-35
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1   MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 60
           MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR
Sbjct: 349 MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 408

Query: 61  NLPKDLRRDIKRHLCLSLLMRQKI 85
           NLPKDLRRDIKRHLCLSLLMR  I
Sbjct: 409 NLPKDLRRDIKRHLCLSLLMRVPI 432

[Close]

BLAST of Carg14022-RA vs. ExPASy Swiss-Prot
Match: O65717 (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana OX=3702 GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 9.0e-36
Identity = 75/81 (92.59%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1   MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 60
           MQTYLQSTTTRLEEMRV+RRDAEQWMSHRLLPE+LR+RIRRYEQYKWQETRGVDEENL+ 
Sbjct: 403 MQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLS 462

Query: 61  NLPKDLRRDIKRHLCLSLLMR 82
           NLPKDLRRDIKRHLCL+LLMR
Sbjct: 463 NLPKDLRRDIKRHLCLALLMR 483

[Close]

BLAST of Carg14022-RA vs. ExPASy Swiss-Prot
Match: Q9LD40 (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana OX=3702 GN=CNGC13 PE=3 SV=2)

HSP 1 Score: 136.0 bits (341), Expect = 3.0e-31
Identity = 66/81 (81.48%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1   MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 60
           MQ YL+STT R EEMRVR+RDAEQWMSHR+LP+ LR+RIRRYEQYKWQETRGV+EENL+R
Sbjct: 391 MQKYLESTTVREEEMRVRKRDAEQWMSHRMLPDDLRKRIRRYEQYKWQETRGVEEENLLR 450

Query: 61  NLPKDLRRDIKRHLCLSLLMR 82
           NLPKDLRRDIKRH CL LL +
Sbjct: 451 NLPKDLRRDIKRHFCLDLLKK 471

[Close]

BLAST of Carg14022-RA vs. ExPASy Swiss-Prot
Match: O82226 (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana OX=3702 GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 135.6 bits (340), Expect = 3.9e-31
Identity = 66/81 (81.48%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1   MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 60
           MQTYLQS T RLEEMRV+RRD+EQWM HR+LP  LRER+RRY+QYKW ETRGVDEENLV+
Sbjct: 431 MQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQ 490

Query: 61  NLPKDLRRDIKRHLCLSLLMR 82
           NLPKDLRRDIKRHLCL+L+ R
Sbjct: 491 NLPKDLRRDIKRHLCLALVRR 511

[Close]

BLAST of Carg14022-RA vs. ExPASy Swiss-Prot
Match: Q9M0A4 (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana OX=3702 GN=CNGC9 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.9e-31
Identity = 66/81 (81.48%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1   MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 60
           MQTYLQS T RLEEMRV+RRD+EQWM HR+LP  LRER+RRY+QYKW ETRGVDEENLV+
Sbjct: 430 MQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQ 489

Query: 61  NLPKDLRRDIKRHLCLSLLMR 82
           NLPKDLRRDIKRHLCL+L+ R
Sbjct: 490 NLPKDLRRDIKRHLCLALVRR 510

[Close]

BLAST of Carg14022-RA vs. ExPASy Swiss-Prot
Match: Q9LNJ0 (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana OX=3702 GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 135.2 bits (339), Expect = 5.1e-31
Identity = 66/81 (81.48%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1   MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 60
           MQ YL+STT R EEMRVR+RDAEQWMSHR+LPE LR+RIRRYEQY+WQETRGV+EE L+R
Sbjct: 390 MQKYLESTTVREEEMRVRKRDAEQWMSHRMLPEDLRKRIRRYEQYRWQETRGVEEETLLR 449

Query: 61  NLPKDLRRDIKRHLCLSLLMR 82
           NLPKDLRRDIKRHLCL LL +
Sbjct: 450 NLPKDLRRDIKRHLCLDLLKK 470

[Close]

BLAST of Carg14022-RA vs. ExPASy TrEMBL
Match: A0A1S3AUY6 (cyclic nucleotide-gated ion channel 1 OS=Cucumis melo OX=3656 GN=LOC103482956 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.1e-36
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1   MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 60
           MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR
Sbjct: 399 MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 458

Query: 61  NLPKDLRRDIKRHLCLSLLMRQKI 85
           NLPKDLRRDIKRHLCLSLLMR  I
Sbjct: 459 NLPKDLRRDIKRHLCLSLLMRVPI 482

[Close]

BLAST of Carg14022-RA vs. ExPASy TrEMBL
Match: A0A6J1DUZ7 (cyclic nucleotide-gated ion channel 1 OS=Momordica charantia OX=3673 GN=LOC111024616 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.1e-36
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1   MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 60
           MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR
Sbjct: 399 MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 458

Query: 61  NLPKDLRRDIKRHLCLSLLMRQKI 85
           NLPKDLRRDIKRHLCLSLLMR  I
Sbjct: 459 NLPKDLRRDIKRHLCLSLLMRVPI 482

[Close]

BLAST of Carg14022-RA vs. ExPASy TrEMBL
Match: A0A5A7TLG5 (Cyclic nucleotide-gated ion channel 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00550 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.1e-36
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1   MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 60
           MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR
Sbjct: 409 MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 468

Query: 61  NLPKDLRRDIKRHLCLSLLMRQKI 85
           NLPKDLRRDIKRHLCLSLLMR  I
Sbjct: 469 NLPKDLRRDIKRHLCLSLLMRVPI 492

[Close]

BLAST of Carg14022-RA vs. ExPASy TrEMBL
Match: A0A6J1K511 (cyclic nucleotide-gated ion channel 1 OS=Cucurbita maxima OX=3661 GN=LOC111491248 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.1e-36
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1   MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 60
           MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR
Sbjct: 402 MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 461

Query: 61  NLPKDLRRDIKRHLCLSLLMRQKI 85
           NLPKDLRRDIKRHLCLSLLMR  I
Sbjct: 462 NLPKDLRRDIKRHLCLSLLMRVPI 485

[Close]

BLAST of Carg14022-RA vs. ExPASy TrEMBL
Match: A0A0A0KJV8 (Cyclic nucleotide-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G139510 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.1e-36
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1   MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 60
           MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR
Sbjct: 399 MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 458

Query: 61  NLPKDLRRDIKRHLCLSLLMRQKI 85
           NLPKDLRRDIKRHLCLSLLMR  I
Sbjct: 459 NLPKDLRRDIKRHLCLSLLMRVPI 482

[Close]

BLAST of Carg14022-RA vs. TAIR 10
Match: AT5G53130.1 (cyclic nucleotide gated channel 1 )

HSP 1 Score: 151.0 bits (380), Expect = 6.4e-37
Identity = 75/81 (92.59%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1   MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 60
           MQTYLQSTTTRLEEMRV+RRDAEQWMSHRLLPE+LR+RIRRYEQYKWQETRGVDEENL+ 
Sbjct: 403 MQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLS 462

Query: 61  NLPKDLRRDIKRHLCLSLLMR 82
           NLPKDLRRDIKRHLCL+LLMR
Sbjct: 463 NLPKDLRRDIKRHLCLALLMR 483

[Close]

BLAST of Carg14022-RA vs. TAIR 10
Match: AT4G01010.1 (cyclic nucleotide-gated channel 13 )

HSP 1 Score: 136.0 bits (341), Expect = 2.1e-32
Identity = 66/81 (81.48%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1   MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 60
           MQ YL+STT R EEMRVR+RDAEQWMSHR+LP+ LR+RIRRYEQYKWQETRGV+EENL+R
Sbjct: 391 MQKYLESTTVREEEMRVRKRDAEQWMSHRMLPDDLRKRIRRYEQYKWQETRGVEEENLLR 450

Query: 61  NLPKDLRRDIKRHLCLSLLMR 82
           NLPKDLRRDIKRH CL LL +
Sbjct: 451 NLPKDLRRDIKRHFCLDLLKK 471

[Close]

BLAST of Carg14022-RA vs. TAIR 10
Match: AT2G23980.1 (cyclic nucleotide-gated channel 6 )

HSP 1 Score: 135.6 bits (340), Expect = 2.8e-32
Identity = 66/81 (81.48%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1   MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 60
           MQTYLQS T RLEEMRV+RRD+EQWM HR+LP  LRER+RRY+QYKW ETRGVDEENLV+
Sbjct: 431 MQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQ 490

Query: 61  NLPKDLRRDIKRHLCLSLLMR 82
           NLPKDLRRDIKRHLCL+L+ R
Sbjct: 491 NLPKDLRRDIKRHLCLALVRR 511

[Close]

BLAST of Carg14022-RA vs. TAIR 10
Match: AT4G30560.1 (cyclic nucleotide gated channel 9 )

HSP 1 Score: 135.6 bits (340), Expect = 2.8e-32
Identity = 66/81 (81.48%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1   MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 60
           MQTYLQS T RLEEMRV+RRD+EQWM HR+LP  LRER+RRY+QYKW ETRGVDEENLV+
Sbjct: 430 MQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQ 489

Query: 61  NLPKDLRRDIKRHLCLSLLMR 82
           NLPKDLRRDIKRHLCL+L+ R
Sbjct: 490 NLPKDLRRDIKRHLCLALVRR 510

[Close]

BLAST of Carg14022-RA vs. TAIR 10
Match: AT4G30560.2 (cyclic nucleotide gated channel 9 )

HSP 1 Score: 135.6 bits (340), Expect = 2.8e-32
Identity = 66/81 (81.48%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1   MQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVR 60
           MQTYLQS T RLEEMRV+RRD+EQWM HR+LP  LRER+RRY+QYKW ETRGVDEENLV+
Sbjct: 404 MQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQ 463

Query: 61  NLPKDLRRDIKRHLCLSLLMR 82
           NLPKDLRRDIKRHLCL+L+ R
Sbjct: 464 NLPKDLRRDIKRHLCLALVRR 484

The following BLAST results are available for this feature:

BLAST of Carg14022-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035743.1	9.5e-59	100.00	Cyclic nucleotide-gated ion channel 1, partial [Cucurbita argyrosperma subsp. ar...	[more]
XP_004145926.1	1.5e-35	97.62	cyclic nucleotide-gated ion channel 1 [Cucumis sativus] >XP_011654622.1 cyclic n...	[more]
KAA0042557.1	1.5e-35	97.62	cyclic nucleotide-gated ion channel 1 [Cucumis melo var. makuwa] >TYK05961.1 cyc...	[more]
XP_022957970.1	1.5e-35	97.62	cyclic nucleotide-gated ion channel 1 isoform X1 [Cucurbita moschata]	[more]
KAG6605775.1	1.5e-35	97.62	Cyclic nucleotide-gated ion channel 1, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of Carg14022-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65717	9.0e-36	92.59	Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana OX=3702 GN=CNGC1 P...	[more]
Q9LD40	3.0e-31	81.48	Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana OX=3702 ...	[more]
O82226	3.9e-31	81.48	Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9M0A4	3.9e-31	81.48	Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LNJ0	5.1e-31	81.48	Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Carg14022-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AUY6	7.1e-36	97.62	cyclic nucleotide-gated ion channel 1 OS=Cucumis melo OX=3656 GN=LOC103482956 PE...	[more]
A0A6J1DUZ7	7.1e-36	97.62	cyclic nucleotide-gated ion channel 1 OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A5A7TLG5	7.1e-36	97.62	Cyclic nucleotide-gated ion channel 1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1K511	7.1e-36	97.62	cyclic nucleotide-gated ion channel 1 OS=Cucurbita maxima OX=3661 GN=LOC11149124...	[more]
A0A0A0KJV8	7.1e-36	97.62	Cyclic nucleotide-binding domain-containing protein OS=Cucumis sativus OX=3659 G...	[more]

BLAST of Carg14022-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53130.1	6.4e-37	92.59	cyclic nucleotide gated channel 1	[more]
AT4G01010.1	2.1e-32	81.48	cyclic nucleotide-gated channel 13	[more]
AT2G23980.1	2.8e-32	81.48	cyclic nucleotide-gated channel 6	[more]
AT4G30560.1	2.8e-32	81.48	cyclic nucleotide gated channel 9	[more]
AT4G30560.2	2.8e-32	81.48	cyclic nucleotide gated channel 9	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.630	Helix hairpin bin	coord: 10..75 e-value: 2.4E-19 score: 71.4
None	No IPR available	PANTHER	PTHR45651:SF91	CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN	coord: 1..84
None	No IPR available	PANTHER	PTHR45651	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	coord: 1..84
IPR018490	Cyclic nucleotide-binding-like	SUPERFAMILY	51206	cAMP-binding domain-like	coord: 13..84

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg14022	Carg14022	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg14022-RA:1	Carg14022-RA:1	exon
Carg14022-RA:2	Carg14022-RA:2	exon
Carg14022-RA:3	Carg14022-RA:3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg14022-RA:cds	Carg14022-RA:cds	CDS
Carg14022-RA:cds	Carg14022-RA:cds_2	CDS
Carg14022-RA:cds	Carg14022-RA:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg14022-RA	Carg14022-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034220	ion transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005216	ion channel activity