Carg14010-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATTTCCAAAATCCCCAATTTTCTTCTTCGTCTTCTTCATCTGCTTCCAAATATGCCGTTCATTGAGATTAACTCCAGCACCACAGGCGCGGAGGACGCCAAGATCAACACAGCAATCAAAATTTTCTACAGAACTTACGGACGCGGATCAACCAAGGTCCTCCTCATAATAGGTCTCTTCAAGATTGCTCCATTTTTCCGTTTTTCCCCTTTCGATTTCTGCTTTTTTCGAATTTCATTCTGATAGCGCTTAAATGGATGAATCAATAATGGATAGGATTGGCCGGAACCCACGATTCATGGAACCCCCAAATCAAAGGGCTTACAGGCACCGATGTGCCGAATGACCACGGCAATCGGAACACCGTCGGTAACCAGATTGCGGCGGACGACGGCGAAGAAGCCAGCTTCGAAGATGGCGGAGGAATCGAAGTTTGTGCATTTGACAATCGGGGAATGGGCCGAAGCTCCGCCCCCACCAAAAAATCTGAATATACGTGAGTTCCACAATCTATTACTTATGAATCACTTCTCTCAATCTCTCTTATCTTAGTTGCTTGTCTTGAGAAATCAATTAGAATTCAGGATTTAAGCCAATTTTCCAATACCCTGAGCGAGAGAGAAAGAAAAGGATAAACCCCTGTTTTTTTCTTCTTGGTTGTGCAGAACAAAGATAATGGCTCAGGATGCCATTGCCTTATTGGATCATTTGGGATGGGAAAAGGTCCATGTCTTTGGTCATTCCATGGGTGAGTGAGTGAGTTTGTAACTCTGCTCAATGATTCATGAACAAGATATAGTTATTAATGTTTTGTTCTATCAATAGGAGGTATGATAGCTTGCAAATTAGCTGCTATTGCGCCTGAAAGAGTCAAGTCATTGGCCATGCTCAATGTCACTGGTGGAGGCTTTCAATGTTGCCCCAAGGTACCTTAATAAACATTTAGTGCTGCCACTCTTAGCTGCTTGTTTGTAACATTATCTTCAGAAAACATTACATTACTTAAGGAATCCAACCAAAATGCTGTTCTGTTGTGGTTGAGCTGGTTCTTAAGGAACAAATTGTTCTTGTAGCTTGACAGGCAAACATTCGACATTGCAGTCCGGTTCTTAAAGGCCAAGACTCCTGAACAAAGGGCAAGTGTTGATTTGGATACACACTATTCAAAGGTAAAGTTAATCATCATGTTCGTCTTCTGTTATCTGCGACCCGACTTTAAACGAGGATGAGTCGATGAATAGTTTTAACAAAATTTGTATATTGTGGTGCAGGAATATCTTGAGGAGTTCGTCGGATTTGAAACAAGAAGAGCGGTATTATATCGGGTATGTAATGATGGGAGGATCATTCTTAACTGGTTTTATGTATACCTTGTTAGTTGGATTCTGGTTTTTATTAAACCTGCTCGTATCCCGTTCCCGCTCCCACTCCGTCTTTTCTAGCTGCTCTCTCCTCTTGAAACCTCCCCAAAAAGGAGGGAATATGGGAGCTAGAAGTGTCTTTTTTTATGGATTCTGAAGCTTACCTTGTTGGGTTATAGTTTTCTTTGTCAACTAGTTTGGAACTTTACAACATTCCATCACAAACATATGCATACATGTTCGGTGATACCGATATATATCCACGTTCACAGAAACGAAAGTAAACCATGATATTACCTGACAATAGCCAAGTGTTTATGGCAATGAGCGTCGTGTATGGAATCTAATCATGAATGAAAAGGAGGAGTCCGACATCCACGAACCCTCTTACAAGAAAATTCTTTTGAACTTCCTTATGAAAATGACTTTAACCTAGAGGAATAAGTAAGACAAAGAACCAATGGCTGTTGTAGTAGGGGTCTGATTGAGTCTCAACTCGTGAGCAAAACTAATCCCTTCTCAAATTGCCGAAGTCGGTCGTGATCGACATGTAATCCTTTCCTTGAGGTTGGAGGATCGAATCGACATGCCCCACTTTGTTGTACTAAAAAATAATAATAATCCCATCCCGAACATGTTAATATATGTATGCCTAGATAGCACTCTGCCAAAATGAATGGATTTTGTTTAAACCATGAGCATATATTGAGAGACTTCTGAATGTTTGAAAAACTTATTAAGAACTAAAGGTGTAGTTGATTCTATGACACTATCTTCATATGTTGATTGTTTATATCAATGCCTCAACAGCTCTGGTCAATCATTACAGACGCATACACATAAAGACATACTTTAAGCTTTAGAGCCTTAGTGAACTCGAAACAATCATTTGCAGGAATATGTTAAAGGTATATCAGCAACAGGAATGCAGACTGATTATGGTTTTGCCGGTCAAGTCAATGCATGCTGGACGCATAAAGTAACGAACAAAGAGATAGAATGCCTTCAATCTGCTGGATTTCTTGTATCAGTCATTCATGGAAGGTAAACGATCACGTCAGTTAATCGCTACGAAACTTATGGCTGACATCCAAATCTGTATGAACATAAACATGTTTCTATCATCTAACATTTGCTGCATCAACATACTTTACGAACGATGATTGGTTTTCGATGATCAGGCAAGATGTTATTGCTCAAATATACTATGCTAGAAAACTTGCAGAGAAGCTTTATCCTGTTGCTAGAATGGTAGATCTTCATGGAGGTCATTTAGTCAGTCGAGAGAGAACTGAAGAGGTATAACTTTTTCTTAATCAGAATCGATCGAAACCGTGTTTTTCACTAGAAACTGATAGACATTTCTATTTTTTTGTGTGAAAGTTCAGGTAAATCAAGCTCTTCTTGACTTAATCAGAGCTTCAGAAACGAAGATGAGTCCACAGGACTGGACAAACTTGCCAAAGAAGAGCTCATGTGAGCATTTTTTTTTTCTTTTAGCAGTCAACTTTTTTCTCTTTCGTTCCTGGGGTCCCACATTAGTTGGGGAGGAGAACAAAACACTCTTTATAAGGGTGTGGAAACCTTTCCCTTGCAAACATGTTTTAAAAACTTTGAGGAGAAACTCGAAAGGGAAAGTCCAAAGAGGACAGTATCTGCTAGCTGTGGGCATTGGGCCGTTACAATAACTTGGAAATGCTGAAAAATCCGTTGTTTCTAATAGGGTGGATGGAGGAGAGAATGTCATTAATAACACTAAAAACTGAAGGAGGAGGAAGCAATGTCTCCACCAAACCTTTCTTGTTGGAGAGACTGCATCTTTTCTTCCTGTATCTCTTCGGTCTGATTCTTTTCATGTTCGAGTATCTCCGGGACACCTTCAAAAGCTTGAAACCAGCTCGAGTTGGGCCCTCCCTTACGTGAAGAATCGTTCCAAAGACTAAATTTTTACCAGTGAGTTATCTGATTGTCCCAACAACGGTCATGTAAATAATATAAAAACTTTTGAAAATAGTTAAGGTGCGTTCAAGCTGGTTTAGACACGCATAAAGATTAAAAAAACGATAGCCCTTTACTTCCATTGAACTCGAACTATAAGAGGTCTCAAGTTTGTTCTTTGCTTCAACTTTGTTGCAGGGTCTGTTCATCTTTGCTATCTGATGGGCAATGATCCAATCATCAAAGTGAAGATGGGGAATGAGTTCTCTTGCAATATTGAGAAATTATATCAACAAAGGAGATAATCCAACAAAAGGCCAATGTTAAAGCCTGGTATACCCTCCCTTCTTCTGTATAATCTATAAAACTGTTCATCCTGTTCATCTTATACCACTAAATGCATATTATTCTCTGTTTAAAATTCGTTTTATAGTTCATCTATTCAAGATATTGAAAGTTTAGCGTCGGTCAAACCTATTCCTAAGAAAACCAAATAGAGATCGATTCTAATATCATTAAGAGCACTGCATAGATAAGCTCATACTAACCCGTCAATTTTGGATCTAATTCGGAATTGAGTTGCCGGAAAGTCGTGGCAGAGGAGGTTGCCTTCATAAGATGGCTGCTTTGCAAGATGGAATCTAAAAGAATGAGAGAAGATGAACTCAAATTGTGGATTTGGAGAGAAATTTAAGCAATAGGACCAAAATATGCCTTTGGAATATACCAATATGCTCCCATGCTACCCTACATGACAAAATATGCCTTGGGTTGAAGCCCAGTTGAACCAG AATTTCCAAAATCCCCAATTTTCTTCTTCGTCTTCTTCATCTGCTTCCAAATATGCCGTTCATTGAGATTAACTCCAGCACCACAGGCGCGGAGGACGCCAAGATCAACACAGCAATCAAAATTTTCTACAGAACTTACGGACGCGGATCAACCAAGGTCCTCCTCATAATAGGATTGGCCGGAACCCACGATTCATGGAACCCCCAAATCAAAGGGCTTACAGGCACCGATGTGCCGAATGACCACGGCAATCGGAACACCGTCGGTAACCAGATTGCGGCGGACGACGGCGAAGAAGCCAGCTTCGAAGATGGCGGAGGAATCGAAGTTTGTGCATTTGACAATCGGGGAATGGGCCGAAGCTCCGCCCCCACCAAAAAATCTGAATATACAACAAAGATAATGGCTCAGGATGCCATTGCCTTATTGGATCATTTGGGATGGGAAAAGGTCCATGTCTTTGGTCATTCCATGGGAGGTATGATAGCTTGCAAATTAGCTGCTATTGCGCCTGAAAGAGTCAAGTCATTGGCCATGCTCAATGTCACTGGTGGAGGCTTTCAATGTTGCCCCAAGCTTGACAGGCAAACATTCGACATTGCAGTCCGGTTCTTAAAGGCCAAGACTCCTGAACAAAGGGCAAGTGTTGATTTGGATACACACTATTCAAAGGAATATCTTGAGGAGTTCGTCGGATTTGAAACAAGAAGAGCGGTATTATATCGGGAATATGTTAAAGGTATATCAGCAACAGGAATGCAGACTGATTATGGTTTTGCCGGTCAAGTCAATGCATGCTGGACGCATAAAGTAACGAACAAAGAGATAGAATGCCTTCAATCTGCTGGATTTCTTGTATCAGTCATTCATGGAAGGTAAACGATCACGTCAGTTAATCGCTACGAAACTTATGGCTGACATCCAAATCTGTATGAACATAAACATGTTTCTATCATCTAACATTTGCTGCATCAACATACTTTACGAACGATGATTGGTTTTCGATGATCAGGCAAGATGTTATTGCTCAAATATACTATGCTAGAAAACTTGCAGAGAAGCTTTATCCTGTTGCTAGAATGGTAGATCTTCATGGAGGTCATTTAGTCAGTCGAGAGAGAACTGAAGAGGTAAATCAAGCTCTTCTTGACTTAATCAGAGCTTCAGAAACGAAGATGAGTCCACAGGACTGGACAAACTTGCCAAAGAAGAGCTCATGGTGGATGGAGGAGAGAATGTCATTAATAACACTAAAAACTGAAGGAGGAGGAAGCAATGTCTCCACCAAACCTTTCTTGTTGGAGAGACTGCATCTTTTCTTCCTGTATCTCTTCGGTCTGATTCTTTTCATGTTCGAGTATCTCCGGGACACCTTCAAAAGCTTGAAACCAGCTCGAGTTGGGCCCTCCCTTACGTGAAGAATCGTTCCAAAGACTAAATTTTTACCAGTGAGTTATCTGATTGTCCCAACAACGGTCATGTAAATAATATAAAAACTTTTGAAAATAGTTAAGGTGCGTTCAAGCTGGTTTAGACACGCATAAAGATTAAAAAAACGATAGCCCTTTACTTCCATTGAACTCGAACTATAAGAGGTCTCAAGTTTGTTCTTTGCTTCAACTTTGTTGCAGGGTCTGTTCATCTTTGCTATCTGATGGGCAATGATCCAATCATCAAAGTGAAGATGGGGAATGAGTTCTCTTGCAATATTGAGAAATTATATCAACAAAGGAGATAATCCAACAAAAGGCCAATGTTAAAGCCTGGTATACCCTCCCTTCTTCTGTATAATCTATAAAACTGTTCATCCTGTTCATCTTATACCACTAAATGCATATTATTCTCTGTTTAAAATTCGTTTTATAGTTCATCTATTCAAGATATTGAAAGTTTAGCGTCGGTCAAACCTATTCCTAAGAAAACCAAATAGAGATCGATTCTAATATCATTAAGAGCACTGCATAGATAAGCTCATACTAACCCGTCAATTTTGGATCTAATTCGGAATTGAGTTGCCGGAAAGTCGTGGCAGAGGAGGTTGCCTTCATAAGATGGCTGCTTTGCAAGATGGAATCTAAAAGAATGAGAGAAGATGAACTCAAATTGTGGATTTGGAGAGAAATTTAAGCAATAGGACCAAAATATGCCTTTGGAATATACCAATATGCTCCCATGCTACCCTACATGACAAAATATGCCTTGGGTTGAAGCCCAGTTGAACCAG ATGCCGTTCATTGAGATTAACTCCAGCACCACAGGCGCGGAGGACGCCAAGATCAACACAGCAATCAAAATTTTCTACAGAACTTACGGACGCGGATCAACCAAGGTCCTCCTCATAATAGGATTGGCCGGAACCCACGATTCATGGAACCCCCAAATCAAAGGGCTTACAGGCACCGATGTGCCGAATGACCACGGCAATCGGAACACCGTCGGTAACCAGATTGCGGCGGACGACGGCGAAGAAGCCAGCTTCGAAGATGGCGGAGGAATCGAAGTTTGTGCATTTGACAATCGGGGAATGGGCCGAAGCTCCGCCCCCACCAAAAAATCTGAATATACAACAAAGATAATGGCTCAGGATGCCATTGCCTTATTGGATCATTTGGGATGGGAAAAGGTCCATGTCTTTGGTCATTCCATGGGAGGTATGATAGCTTGCAAATTAGCTGCTATTGCGCCTGAAAGAGTCAAGTCATTGGCCATGCTCAATGTCACTGGTGGAGGCTTTCAATGTTGCCCCAAGCTTGACAGGCAAACATTCGACATTGCAGTCCGGTTCTTAAAGGCCAAGACTCCTGAACAAAGGGCAAGTGTTGATTTGGATACACACTATTCAAAGGAATATCTTGAGGAGTTCGTCGGATTTGAAACAAGAAGAGCGGTATTATATCGGGAATATGTTAAAGGTATATCAGCAACAGGAATGCAGACTGATTATGGTTTTGCCGGTCAAGTCAATGCATGCTGGACGCATAAAGTAACGAACAAAGAGATAGAATGCCTTCAATCTGCTGGATTTCTTGTATCAGTCATTCATGGAAGGTAA MPFIEINSSTTGAEDAKINTAIKIFYRTYGRGSTKVLLIIGLAGTHDSWNPQIKGLTGTDVPNDHGNRNTVGNQIAADDGEEASFEDGGGIEVCAFDNRGMGRSSAPTKKSEYTTKIMAQDAIALLDHLGWEKVHVFGHSMGGMIACKLAAIAPERVKSLAMLNVTGGGFQCCPKLDRQTFDIAVRFLKAKTPEQRASVDLDTHYSKEYLEEFVGFETRRAVLYREYVKGISATGMQTDYGFAGQVNACWTHKVTNKEIECLQSAGFLVSVIHGR Homology
BLAST of Carg14010-RA vs. NCBI nr
Match: KAG7035755.1 (rutD [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 563.1 bits (1450), Expect = 1.3e-156 Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0
BLAST of Carg14010-RA vs. NCBI nr
Match: KAG6605790.1 (hypothetical protein SDJN03_03107, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 562.0 bits (1447), Expect = 2.8e-156 Identity = 274/275 (99.64%), Postives = 275/275 (100.00%), Query Frame = 0
BLAST of Carg14010-RA vs. NCBI nr
Match: XP_023532415.1 (uncharacterized protein LOC111794595 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 560.5 bits (1443), Expect = 8.3e-156 Identity = 273/275 (99.27%), Postives = 275/275 (100.00%), Query Frame = 0
BLAST of Carg14010-RA vs. NCBI nr
Match: XP_022995986.1 (uncharacterized protein LOC111491334 [Cucurbita maxima]) HSP 1 Score: 558.9 bits (1439), Expect = 2.4e-155 Identity = 272/275 (98.91%), Postives = 274/275 (99.64%), Query Frame = 0
BLAST of Carg14010-RA vs. NCBI nr
Match: XP_022958692.1 (uncharacterized protein LOC111459843 [Cucurbita moschata]) HSP 1 Score: 558.1 bits (1437), Expect = 4.1e-155 Identity = 273/275 (99.27%), Postives = 274/275 (99.64%), Query Frame = 0
BLAST of Carg14010-RA vs. ExPASy Swiss-Prot
Match: A8IAD8 (Putative aminoacrylate hydrolase RutD OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) OX=438753 GN=rutD PE=3 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 9.0e-12 Identity = 52/171 (30.41%), Postives = 74/171 (43.27%), Query Frame = 0
BLAST of Carg14010-RA vs. ExPASy Swiss-Prot
Match: B7KWT4 (Putative aminoacrylate hydrolase RutD OS=Methylorubrum extorquens (strain CM4 / NCIMB 13688) OX=440085 GN=rutD PE=3 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 4.9e-10 Identity = 40/120 (33.33%), Postives = 59/120 (49.17%), Query Frame = 0
BLAST of Carg14010-RA vs. ExPASy Swiss-Prot
Match: B1ZB18 (Putative aminoacrylate hydrolase RutD OS=Methylorubrum populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) OX=441620 GN=rutD PE=3 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 6.4e-10 Identity = 40/120 (33.33%), Postives = 57/120 (47.50%), Query Frame = 0
BLAST of Carg14010-RA vs. ExPASy Swiss-Prot
Match: P34913 (Bifunctional epoxide hydrolase 2 OS=Homo sapiens OX=9606 GN=EPHX2 PE=1 SV=2) HSP 1 Score: 63.5 bits (153), Expect = 4.2e-09 Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 0
BLAST of Carg14010-RA vs. ExPASy Swiss-Prot
Match: C7CM33 (Putative aminoacrylate hydrolase RutD OS=Methylorubrum extorquens (strain DSM 6343 / CIP 106787 / DM4) OX=661410 GN=rutD PE=3 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 4.2e-09 Identity = 39/120 (32.50%), Postives = 57/120 (47.50%), Query Frame = 0
BLAST of Carg14010-RA vs. ExPASy TrEMBL
Match: A0A6J1K3F3 (uncharacterized protein LOC111491334 OS=Cucurbita maxima OX=3661 GN=LOC111491334 PE=4 SV=1) HSP 1 Score: 558.9 bits (1439), Expect = 1.2e-155 Identity = 272/275 (98.91%), Postives = 274/275 (99.64%), Query Frame = 0
BLAST of Carg14010-RA vs. ExPASy TrEMBL
Match: A0A6J1H2I9 (uncharacterized protein LOC111459843 OS=Cucurbita moschata OX=3662 GN=LOC111459843 PE=4 SV=1) HSP 1 Score: 558.1 bits (1437), Expect = 2.0e-155 Identity = 273/275 (99.27%), Postives = 274/275 (99.64%), Query Frame = 0
BLAST of Carg14010-RA vs. ExPASy TrEMBL
Match: A0A0A0KLW7 (AB hydrolase-1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G139370 PE=4 SV=1) HSP 1 Score: 491.1 bits (1263), Expect = 3.0e-135 Identity = 238/275 (86.55%), Postives = 255/275 (92.73%), Query Frame = 0
BLAST of Carg14010-RA vs. ExPASy TrEMBL
Match: A0A6J1DV10 (uncharacterized protein LOC111024626 OS=Momordica charantia OX=3673 GN=LOC111024626 PE=4 SV=1) HSP 1 Score: 482.6 bits (1241), Expect = 1.1e-132 Identity = 233/275 (84.73%), Postives = 251/275 (91.27%), Query Frame = 0
BLAST of Carg14010-RA vs. ExPASy TrEMBL
Match: A0A1S3AUJ9 (putative aminoacrylate hydrolase RutD OS=Cucumis melo OX=3656 GN=LOC103482970 PE=4 SV=1) HSP 1 Score: 477.6 bits (1228), Expect = 3.4e-131 Identity = 231/275 (84.00%), Postives = 251/275 (91.27%), Query Frame = 0
BLAST of Carg14010-RA vs. TAIR 10
Match: AT5G53050.1 (alpha/beta-Hydrolases superfamily protein ) HSP 1 Score: 392.1 bits (1006), Expect = 3.6e-109 Identity = 191/275 (69.45%), Postives = 214/275 (77.82%), Query Frame = 0
BLAST of Carg14010-RA vs. TAIR 10
Match: AT5G53050.2 (alpha/beta-Hydrolases superfamily protein ) HSP 1 Score: 392.1 bits (1006), Expect = 3.6e-109 Identity = 191/275 (69.45%), Postives = 214/275 (77.82%), Query Frame = 0
BLAST of Carg14010-RA vs. TAIR 10
Match: AT5G53050.3 (alpha/beta-Hydrolases superfamily protein ) HSP 1 Score: 392.1 bits (1006), Expect = 3.6e-109 Identity = 191/275 (69.45%), Postives = 214/275 (77.82%), Query Frame = 0
BLAST of Carg14010-RA vs. TAIR 10
Match: AT4G02340.1 (alpha/beta-Hydrolases superfamily protein ) HSP 1 Score: 55.8 bits (133), Expect = 6.2e-08 Identity = 29/76 (38.16%), Postives = 40/76 (52.63%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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