Carg12997-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg12997-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr10: 3304639 .. 3307114 (+)
Sequence length300
RNA-Seq ExpressionCarg12997-RA
SyntenyCarg12997-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCACTTTGGCAATATTTTCAAAAGGAACACTAGAATCAAGCGATTTGTCAATTATAACATCTAGACCTTCTTTGCTCGTGAGTAGTGGACGAGCCCAAGCAACAAGATTTTCTTCACCAGGCGGTTGCGACATGTCAACCGGTTTCCTCCCTGTTAATAGCTCAAGAAGAACGACTCCGTAGCTATAAACATCACTCTTCACAAGTAAATGCCCCGTCATCGCATATTCCGGAGCCACATATCTGTAGGAGATGCAATAACTCGAGTAAGAGAAGGCATAAAATACAAAAACGAACAAAGCGAAGATGCATAACAATCTCATTATTATTGTTCAAAAGTAAGGTCTAATATATTTTGTTTCCACAGGTGCATTGTTGGTGAGGAAAATCAAGAACAGACGTTTACTCTAAGATTTGAAGGTAATCAAGTTTGCTTAATTCAGGTGCATGCCTAAGTAAGTAAGGGATTAAGTTAAGATTGTGACAACTATATTAACTACCATAACCTCAGCTTGGTTCTTCACTGTATCTGGCAGTGTTAATTCCAAAAGAACTTCTAATAACACGACCAAACGGAAGGAATTCTTACCCGAAAGTTCCCATGACGCGTGTCGAAATGTGTCTGCTTTCCTCATCCATTGCCGTTCTAGCCAAGCCAAAGTCCGAAACTTTTGGTGTAAAATCATGTTCTAATAAGATATTGCTGGATTTGAAGTCTCGATGTATGACTCTCGGACTCGAATCCTCGTGTAGATAGGATAAACCCCGAGCAGCGCCAAGTGCTATCTTCATCCGAGCGTCCCAATCAAGTGGGGCAGTTTCCTTATCAACATCTGATAGAAGACTAGGTAAGATTAAATTGTTATCATGCTGCTTAAACTACAAAGGAAACACATGAGAAGCATTTTCTGACCATGTAAGTGAGATTCCACACTGCCATTTGGAATAAGTTCATACACCAGGGAGCGGCTACCCTCCTCAGTACATATTCCAATCAACTTGACCAAGTTTCTATGGTGAAGACGGCTAAGCATTTCAACTTCAGCCAAGAATTCTCGACCGCCCTGGTGATCATCTCTCTTGAGAACTTTAACTGCTACTTCGGTACCGTCTTCGAGAGTGCCTCTGTAAACACGTCCAAAGCCACCCTCCCCTAATATCCTTGAAGGGTCAAAATTATTGGTGGCTCTCTCTATGTCTGAGGCACTGAATGTCTTGGCTGATCCTGAATATGGGGCAATGCTAGATCCAAAGGATAAAGAAGCAGAACTAGGCATGGCTGCCATGACTGATCCACCAGCACCTGCAAGACTCTATTAACTTAGAAAAATCCAGTGAGCTAACGAATGCAGTAAAATAACGTTGCAAGAGATCCGCCTTTGCAGGGGGGCAGCATAAGTAGGCAATCCATTTACCTGATGGTTTATTGAGGGAAGATACCAAAGCATGTGGAGTTGGTTTCGGCTGACAAACGCCATCGTTGCGTCTGAGGAGCAAAATCCAAGCAGTCGCAACACATAAGACGACTGCAACAGTAGTTGATAGAGCAATAATGGCAATCATACCACCACTTATCCTGTCTTTGTGCTGTATGTTCTGTACATCGACGCCAATCGGTTTAACCGTCCTCGCATCGTTACTATTACTATAATAAGGCTCATTATCTATTCCTGAATCTCCAGAAGGAGGTGATTGAGGTAAACCCGGATATCGAACGTATAATACTTCATATTTCCCAAAATAGGAAGCTTTGACAGAAACTTTCTTATGCCAAAACCTTTGGTAAGTCAAAAAGGCTGTAGTATTGTCAAATTTTTCCCCAAGTGGGACTAAGTCAATAAGAACAACAGTCTTATCTGGTTGCTGGTTAGCTGCATTAGCTCCAATGACGCGTACTTGGCTTTGCTTTACGAACACCCCAGCAGCGATTTCTGCTGCCAGCTCCGAAACCAGGGGGAAGAACGTATATAGCGAAACGCTGAGGCGAAGTCCAATTTGCATGGGCCAAACACAACCGCAGGGAGATCCTGGGGGAGTGTTTGTATATGGCTCGGTGCACAGGGTAGCCGAACAATCTACATCAAATTGAACATGTTCTTGATTACTAATTTCCTTTGTAATCTGGATGAGAATTTCGAGTAGATGTATACCTTCATTGGGAGGTGGAGGAGGCAATGTATGTATCGGTCGCAGCGGTGGCATCTTCGGGCTTTTTGCCCAAGGTTTCAAGGGTGAGGGTGAAGCTTTAGGGGGATAAAAATGTCCTGAAAATGGAATGAACAAACAACAATGTTAATATTTTATATTGGCATGTCAAAGAGTTCTTTGATTTAAACATTGTTATGCTCCATACTTTCAGTATGACCAGACATTTTCTGGTATGGTGAAGGAGAAGGCGAAACATGAGTCACAAGCGGTGGACGATCATAATGTGAAGGAGCTATCGACGAAGGATCTGCACAGGAAGAAA

mRNA sequence

ATGGCAGCCACTTTGGCAATATTTTCAAAAGGAACACTAGAATCAAGCGATTTGTCAATTATAACATCTAGACCTTCTTTGCTCGGAGCGGCTACCCTCCTCAGTACATATTCCAATCAACTTGACCAAGTTTCTATGGTGAAGACGGCTAAGCATTTCAACTTCAGCCAAGAATTCTCGACCGCCCTGTATGACCAGACATTTTCTGGTATGGTGAAGGAGAAGGCGAAACATGAGTCACAAGCGGTGGACGATCATAATGTGAAGGAGCTATCGACGAAGGATCTGCACAGGAAGAAA

Coding sequence (CDS)

ATGGCAGCCACTTTGGCAATATTTTCAAAAGGAACACTAGAATCAAGCGATTTGTCAATTATAACATCTAGACCTTCTTTGCTCGGAGCGGCTACCCTCCTCAGTACATATTCCAATCAACTTGACCAAGTTTCTATGGTGAAGACGGCTAAGCATTTCAACTTCAGCCAAGAATTCTCGACCGCCCTGTATGACCAGACATTTTCTGGTATGGTGAAGGAGAAGGCGAAACATGAGTCACAAGCGGTGGACGATCATAATGTGAAGGAGCTATCGACGAAGGATCTGCACAGGAAGAAA

Protein sequence

MAATLAIFSKGTLESSDLSIITSRPSLLGAATLLSTYSNQLDQVSMVKTAKHFNFSQEFSTALYDQTFSGMVKEKAKHESQAVDDHNVKELSTKDLHRKK
Homology
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BLAST of Carg12997-RA vs. NCBI nr
Match: KAG7023661.1 (hypothetical protein SDJN02_14687, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.4 bits (472), Expect = 1.2e-43
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MAATLAIFSKGTLESSDLSIITSRPSLLGAATLLSTYSNQLDQVSMVKTAKHFNFSQEFS 60
           MAATLAIFSKGTLESSDLSIITSRPSLLGAATLLSTYSNQLDQVSMVKTAKHFNFSQEFS
Sbjct: 1   MAATLAIFSKGTLESSDLSIITSRPSLLGAATLLSTYSNQLDQVSMVKTAKHFNFSQEFS 60

Query: 61  TALYDQTFSGMVKEKAKHESQAVDDHNVKELSTKDLHRKK 101
           TALYDQTFSGMVKEKAKHESQAVDDHNVKELSTKDLHRKK
Sbjct: 61  TALYDQTFSGMVKEKAKHESQAVDDHNVKELSTKDLHRKK 100

The following BLAST results are available for this feature:
BLAST of Carg12997-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7023661.11.2e-43100.00hypothetical protein SDJN02_14687, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg12997-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg12997-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg12997-RA vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..100

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg12997Carg12997gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg12997-RA:3Carg12997-RA:3exon
Carg12997-RA:2Carg12997-RA:2exon
Carg12997-RA:1Carg12997-RA:1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg12997-RA:cdsCarg12997-RA:cdsCDS
Carg12997-RA:cdsCarg12997-RA:cds_2CDS
Carg12997-RA:cdsCarg12997-RA:cds_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg12997-RACarg12997-RA-proteinpolypeptide