Carg12997-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12997-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr10: 3304639 .. 3307114 (+)
Sequence length	300
RNA-Seq Expression	Carg12997-RA
Synteny	Carg12997-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCACTTTGGCAATATTTTCAAAAGGAACACTAGAATCAAGCGATTTGTCAATTATAACATCTAGACCTTCTTTGCTCGTGAGTAGTGGACGAGCCCAAGCAACAAGATTTTCTTCACCAGGCGGTTGCGACATGTCAACCGGTTTCCTCCCTGTTAATAGCTCAAGAAGAACGACTCCGTAGCTATAAACATCACTCTTCACAAGTAAATGCCCCGTCATCGCATATTCCGGAGCCACATATCTGTAGGAGATGCAATAACTCGAGTAAGAGAAGGCATAAAATACAAAAACGAACAAAGCGAAGATGCATAACAATCTCATTATTATTGTTCAAAAGTAAGGTCTAATATATTTTGTTTCCACAGGTGCATTGTTGGTGAGGAAAATCAAGAACAGACGTTTACTCTAAGATTTGAAGGTAATCAAGTTTGCTTAATTCAGGTGCATGCCTAAGTAAGTAAGGGATTAAGTTAAGATTGTGACAACTATATTAACTACCATAACCTCAGCTTGGTTCTTCACTGTATCTGGCAGTGTTAATTCCAAAAGAACTTCTAATAACACGACCAAACGGAAGGAATTCTTACCCGAAAGTTCCCATGACGCGTGTCGAAATGTGTCTGCTTTCCTCATCCATTGCCGTTCTAGCCAAGCCAAAGTCCGAAACTTTTGGTGTAAAATCATGTTCTAATAAGATATTGCTGGATTTGAAGTCTCGATGTATGACTCTCGGACTCGAATCCTCGTGTAGATAGGATAAACCCCGAGCAGCGCCAAGTGCTATCTTCATCCGAGCGTCCCAATCAAGTGGGGCAGTTTCCTTATCAACATCTGATAGAAGACTAGGTAAGATTAAATTGTTATCATGCTGCTTAAACTACAAAGGAAACACATGAGAAGCATTTTCTGACCATGTAAGTGAGATTCCACACTGCCATTTGGAATAAGTTCATACACCAGGGAGCGGCTACCCTCCTCAGTACATATTCCAATCAACTTGACCAAGTTTCTATGGTGAAGACGGCTAAGCATTTCAACTTCAGCCAAGAATTCTCGACCGCCCTGGTGATCATCTCTCTTGAGAACTTTAACTGCTACTTCGGTACCGTCTTCGAGAGTGCCTCTGTAAACACGTCCAAAGCCACCCTCCCCTAATATCCTTGAAGGGTCAAAATTATTGGTGGCTCTCTCTATGTCTGAGGCACTGAATGTCTTGGCTGATCCTGAATATGGGGCAATGCTAGATCCAAAGGATAAAGAAGCAGAACTAGGCATGGCTGCCATGACTGATCCACCAGCACCTGCAAGACTCTATTAACTTAGAAAAATCCAGTGAGCTAACGAATGCAGTAAAATAACGTTGCAAGAGATCCGCCTTTGCAGGGGGGCAGCATAAGTAGGCAATCCATTTACCTGATGGTTTATTGAGGGAAGATACCAAAGCATGTGGAGTTGGTTTCGGCTGACAAACGCCATCGTTGCGTCTGAGGAGCAAAATCCAAGCAGTCGCAACACATAAGACGACTGCAACAGTAGTTGATAGAGCAATAATGGCAATCATACCACCACTTATCCTGTCTTTGTGCTGTATGTTCTGTACATCGACGCCAATCGGTTTAACCGTCCTCGCATCGTTACTATTACTATAATAAGGCTCATTATCTATTCCTGAATCTCCAGAAGGAGGTGATTGAGGTAAACCCGGATATCGAACGTATAATACTTCATATTTCCCAAAATAGGAAGCTTTGACAGAAACTTTCTTATGCCAAAACCTTTGGTAAGTCAAAAAGGCTGTAGTATTGTCAAATTTTTCCCCAAGTGGGACTAAGTCAATAAGAACAACAGTCTTATCTGGTTGCTGGTTAGCTGCATTAGCTCCAATGACGCGTACTTGGCTTTGCTTTACGAACACCCCAGCAGCGATTTCTGCTGCCAGCTCCGAAACCAGGGGGAAGAACGTATATAGCGAAACGCTGAGGCGAAGTCCAATTTGCATGGGCCAAACACAACCGCAGGGAGATCCTGGGGGAGTGTTTGTATATGGCTCGGTGCACAGGGTAGCCGAACAATCTACATCAAATTGAACATGTTCTTGATTACTAATTTCCTTTGTAATCTGGATGAGAATTTCGAGTAGATGTATACCTTCATTGGGAGGTGGAGGAGGCAATGTATGTATCGGTCGCAGCGGTGGCATCTTCGGGCTTTTTGCCCAAGGTTTCAAGGGTGAGGGTGAAGCTTTAGGGGGATAAAAATGTCCTGAAAATGGAATGAACAAACAACAATGTTAATATTTTATATTGGCATGTCAAAGAGTTCTTTGATTTAAACATTGTTATGCTCCATACTTTCAGTATGACCAGACATTTTCTGGTATGGTGAAGGAGAAGGCGAAACATGAGTCACAAGCGGTGGACGATCATAATGTGAAGGAGCTATCGACGAAGGATCTGCACAGGAAGAAA

mRNA sequence

ATGGCAGCCACTTTGGCAATATTTTCAAAAGGAACACTAGAATCAAGCGATTTGTCAATTATAACATCTAGACCTTCTTTGCTCGGAGCGGCTACCCTCCTCAGTACATATTCCAATCAACTTGACCAAGTTTCTATGGTGAAGACGGCTAAGCATTTCAACTTCAGCCAAGAATTCTCGACCGCCCTGTATGACCAGACATTTTCTGGTATGGTGAAGGAGAAGGCGAAACATGAGTCACAAGCGGTGGACGATCATAATGTGAAGGAGCTATCGACGAAGGATCTGCACAGGAAGAAA

Coding sequence (CDS)

ATGGCAGCCACTTTGGCAATATTTTCAAAAGGAACACTAGAATCAAGCGATTTGTCAATTATAACATCTAGACCTTCTTTGCTCGGAGCGGCTACCCTCCTCAGTACATATTCCAATCAACTTGACCAAGTTTCTATGGTGAAGACGGCTAAGCATTTCAACTTCAGCCAAGAATTCTCGACCGCCCTGTATGACCAGACATTTTCTGGTATGGTGAAGGAGAAGGCGAAACATGAGTCACAAGCGGTGGACGATCATAATGTGAAGGAGCTATCGACGAAGGATCTGCACAGGAAGAAA

Protein sequence

MAATLAIFSKGTLESSDLSIITSRPSLLGAATLLSTYSNQLDQVSMVKTAKHFNFSQEFSTALYDQTFSGMVKEKAKHESQAVDDHNVKELSTKDLHRKK

Homology

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BLAST of Carg12997-RA vs. NCBI nr
Match: KAG7023661.1 (hypothetical protein SDJN02_14687, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.4 bits (472), Expect = 1.2e-43
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MAATLAIFSKGTLESSDLSIITSRPSLLGAATLLSTYSNQLDQVSMVKTAKHFNFSQEFS 60
           MAATLAIFSKGTLESSDLSIITSRPSLLGAATLLSTYSNQLDQVSMVKTAKHFNFSQEFS
Sbjct: 1   MAATLAIFSKGTLESSDLSIITSRPSLLGAATLLSTYSNQLDQVSMVKTAKHFNFSQEFS 60

Query: 61  TALYDQTFSGMVKEKAKHESQAVDDHNVKELSTKDLHRKK 101
           TALYDQTFSGMVKEKAKHESQAVDDHNVKELSTKDLHRKK
Sbjct: 61  TALYDQTFSGMVKEKAKHESQAVDDHNVKELSTKDLHRKK 100

The following BLAST results are available for this feature:

BLAST of Carg12997-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023661.1	1.2e-43	100.00	hypothetical protein SDJN02_14687, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg12997-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg12997-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg12997-RA vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..100

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12997	Carg12997	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12997-RA:3	Carg12997-RA:3	exon
Carg12997-RA:2	Carg12997-RA:2	exon
Carg12997-RA:1	Carg12997-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12997-RA:cds	Carg12997-RA:cds	CDS
Carg12997-RA:cds	Carg12997-RA:cds_2	CDS
Carg12997-RA:cds	Carg12997-RA:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12997-RA	Carg12997-RA-protein	polypeptide